Abstract
The authors report on a fluorometric method for the rapid detection of BRCA1, CFRT and MRP3 gene mutations. These are associated with breast cancer, cystic fibrosis and autoimmune hepatitis diseases, respectively. Carbon nanodots with blue fluorescence (with excitation/emission maxima at 340/440 nm) were synthesized and characterized, and their interactions with DNA were investigated. Changes in the fluorescence intensity following interaction with ssDNA and dsDNA were used for specific DNA sequence of BRCA1, CFRT and MRP3 genes detection. The response to DNAs is linear up to 200 nM and the detection limit is 270 pM. The assay selectivity allows the detection of single gene mutations. Under optimum conditions, the assay can rapidly discriminate between wild type and mutated samples.
Similar content being viewed by others
References
Cattrall RW (1997) Chemical sensors, chemistry primers. Oxford University Press, Oxford
Mickelsen SR (1996) Electrochemical biosensors for DNA sequence detection. Electroanalysis 8:15–19
Palecek E, Fojta M, Tomschik M, Wang J (1998) Electrochemical biosensors for DNA hybridization and DNA damage. Biosens Bioelectron 13:621–628
Wang J (2006) Electrochemical biosensors: towards point-of-care cancer diagnostics. Biosens Bioelectron 21:1887–1892
Miao P, Liu L, Nie YJ, Li GX (2009) An electrochemical sensing strategy for ultrasensitive detection of glutathione by using two gold electrodes and two complementary oligonucleotides. Biosens Bioelectron 24:3347–3351
Wan Y, Zhang J, Liu G, Pan D, Wang LH, Song SP, Fan CH (2009) Ligase-based multiple DNA analysis by using an electrochemical sensor array. Biosens Bioelectron 24:1209–1212
Ma H, Li Z, Xue N, Cheng Z, Miao X (2018) A gold nanoparticle based fluorescent probe for simultaneous recognition of single-stranded DNA and double-stranded DNA. Microchim Acta 185:93
Qian ZS, Shan XY, Chai LJ, Ma JJ, Chen JR, Feng H (2014) A universal fluorescence sensing strategy based on biocompatible graphene quantum dots and graphene oxide for the detection of DNA. Nanoscale 6:5671–5674
Li HT, Kang ZH, Liu Y, Lee ST (2012) Carbon nanodots: synthesis, properties and applications. J Mater Chem 22:24230–24253
Zhong D, Zhuo Y, Feng YJ, Yang XM (2015) Employing carbon dots modified with vancomycin for assaying Gram-positive bacteria like Staphylococcus aureus. Biosens Bioelectron 74:546–553
García-Mendiola T, Bravo I, López-Moreno JM, Pariente F, Wannemacher R, Weber K, Popp J, Lorenzo E (2018) Carbon nanodots based biosensors for gene mutation detection. Sens Actuators B: Chem 256:226–233
D'Andrea E, Marzuillo C, De Vito C, Di Marco M, Pitini E, Vacchio MR, Villari P (2016) Which BRCA genetic testing programs are ready for implementation in health care? A systematic review of economic evaluations. Genet Med 18:1171–1180
Marmur J (1961) Procedure for isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208–218
Doty P, Rice SA (1955) The denaturation of Desoxypentose nucleic acid. Biochim Biophys Acta 16:446–448
Horcas I, Fernández R, Gómez-Rodríguez JM, Colchero J, Gómez-Herrero J, Baro AM (2007) WSXM: a software for scanning probe microscopy and a tool for nanotechnology. Rev Sci Instrum 78:013705
Baker SN, Baker GA (2010) Luminescent carbon Nanodots: emergent Nanolights. Angew Chem Int Ed 49:6726–6744
Shen JH, Zhu YH, Yang XL, Li CZ (2012) Graphene quantum dots: emergent nanolights for bioimaging, sensors, catalysis and photovoltaic devices. Chem Commun 48:3686–3699
Zhang ZP, Zhang J, Chen N, Qu LT (2012) Graphene quantum dots: an emerging material for energy-related applications and beyond. Energy Environ Sci 5:8869–8890
Zhu SJ, Tang SJ, Zhang JH, Yang B (2012) Control the size and surface chemistry of graphene for the rising fluorescent materials. Chem Commun 48:4527–4539
Cao L, Meziani MJ, Sahu S, Sun YP (2013) Photoluminescence properties of graphene versus other carbon nanomaterials. Acc Chem Res 46:171–180
Li LL, Wu GH, Yang GH, Peng J, Zhao JW, Zhu JJ (2013) Focusing on luminescent graphene quantum dots: current status and future perspectives. Nanoscale 5:4015–4039
Li LL, Ji J, Fei R, Wang CZ, Lu Q, Zhang JR, Jiang LP, Zhu JJ (2012) A facile microwave avenue to electrochemiluminescent two-color graphene quantum dots. Adv Funct Mater 22:2971–2979
Wang YF, Hu AG (2014) Carbon quantum dots: synthesis, properties and applications. J Mater Chem C 2:6921–6939
Chen L, Han HY (2014) Recent advances in the use of near-infrared quantum dots as optical probes for bioanalytical, imaging and solar cell application. Microchim Acta 181:1485–1495
Borghei Y, Hosseini M, Ganjali MR (2017) Detection of large deletion in human BRCA1 gene in human breast carcinoma MCF-7 cells by using DNA-silver nanoclusters. Methods Appl Fluoresc 6:015001
He H, Chan DS, Leung C, Ma D (2012) A highly selective G-quadruplex-based luminescent switch-on probe for the detection of gene deletion. Chem Commun 48:9462–9464
Zhu SJ, Meng QN, Wang L, Zhang JH, Song YB, Jin H, Zhang K, Sun HC, Wang HY, Yang B (2013) Highly Photoluminescent carbon dots for multicolor patterning, sensors, and bioimaging. Angew Chem Int Ed 52:3953–3957
Wen Z, Yin X (2016) Excitation-independent carbon dots, from photoluminescence mechanism to single-color application. RSC Adv 6:27829–27835
Mergny JL, Duval-Valentin G, Nguyen CH, Perrouault L, Faucon B, Rougée M, Montenay-Garestier T, Bisagni E, Hélène C (1992) Triple Helix-specific ligands. Science 256:1681–1684
Kumar CV, Turner RS, Asuncion EH (1993) Groove binding of a styrylcyanine dye to the DNA double helix: the salt effect. J Photochem Photobiol A Chem 74:231–238
Cosa G, Focsaneanu KS, McLean JRN, McNamee JP, Scaiano JC (2001) Photophysical properties of fluorescent DNA-dyes bound to single- and double-stranded DNA in aqueous buffered solution. Photochem Photobiol 73:585–599
Heli H, Moosavi-Movahedi AA, Jabbari A, Ahmad F (2007) An electrochemical study of safranin O binding to DNA at the surface. J Solid State Electrochem 11:593–599
Lakowicz JR (2006) Principles of fluorescence spectroscopy. Springer Science+Business Media, New York
Acknowledgements
CAM projects: TRANSNANOAVANSENS-CM (S2018/NMT-4349) and MAD2D-CM Program. MEIC projects: CTQ2017-84309-C2-1-R and MAT2015-71879-P. We thank the Confocal Microscopy and Flow Cytometry Services of CBMSO.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The author(s) declare that they have no competing interests.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
ESM 1
(DOCX 4518 kb)
Rights and permissions
About this article
Cite this article
García-Mendiola, T., Elosegui, C.G., Bravo, I. et al. Fluorescent C-NanoDots for rapid detection of BRCA1, CFTR and MRP3 gene mutations. Microchim Acta 186, 293 (2019). https://doi.org/10.1007/s00604-019-3386-9
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00604-019-3386-9