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Crumbling diversity: comparison of historical archived and contemporary natural populations indicate reduced genetic diversity and increasing genetic differentiation in the golden-cheeked warbler

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Abstract

Genetic viability of threatened and endangered species is of increasing concern with habitat loss and fragmentation. Valuable assessments of the genetic status of endangered species are difficult in most cases, where only single sample estimates are available. Using historical and contemporary samples, we assessed the impact of both historical and recent demographic changes on population genetics of the endangered golden-cheeked warbler, (Dendroica chrysoparia). Our study documents a steep decline in genetic diversity in an endangered species over a 100-year period, along with concurrent increase in genetic differentiation, and low contemporary effective sizes for all the populations we evaluated. While adding to the growing body of literature that describes the genetic impacts of habitat fragmentation, our study may also serve as an informative guide to future management of endangered species. Our study underlines the importance of long term population genetic monitoring in understanding the full extent of genetic changes in endangered species.

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Acknowledgments

We thank the AMNH, New York, NY, MCZ Harvard University, Cambridge, MA, FMNH, Chicago, IL, and NMNH, Washington DC for tissue samples. We thank Ft. Hood, Kerr WMA, Balcones Canyonlands NWR, TPWD, K. Barr, C. Goates, J. Hernandez, S. Pathikonda, and L. Butler for access to field sites, and help with field sampling. We thank J. Neigel, S. Mopper and D. Johnson and anonymous reviewers for comments on an earlier version of this manuscript. This study was funded by U.S. Department of Defense under the Section 6.1 Basic Research Program and U.S. Army 6.2 Threatened and Endangered Species Program to RFL and PLL.

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Correspondence to Giridhar Athrey.

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Appendices

Appendix 1

See Tables 4, 5, 6 and 7

Table 4 Historical population summary of diversity indices
Table 5 Nei’s estimation of heterozygosity
Table 6 Modern population’s summary of diversity
Table 7 Diversity measures

Appendix 2

 

Sample ID

Museum

A382291

AMNH

A382292

AMNH

A382293

AMNH

A382294

AMNH

A382295

AMNH

A382296

AMNH

A382297

AMNH

A382360

AMNH

A382361

AMNH

A382362

AMNH

A382363

AMNH

A382364

AMNH

A382365

AMNH

A382305

AMNH

A382310

AMNH

A382313

AMNH

A382318

AMNH

A382323

AMNH

A382327

AMNH

A382329

AMNH

A382335

AMNH

A382340

AMNH

A382341

AMNH

A382346

AMNH

A382348

AMNH

A382351

AMNH

A382352

AMNH

A507004

AMNH

F149870

FMNH

F149871

FMNH

F149872

FMNH

F26172

FMNH

F308240

FMNH

F308244

FMNH

M101045

MCZ

M101254

MCZ

M204935

MCZ

M214364

MCZ

M28413

MCZ

M326084

MCZ

M326086

MCZ

M320914

MCZ

M320923

MCZ

M320940

MCZ

M320941

MCZ

M320943

MCZ

M320946

MCZ

M320956

MCZ

M320957

MCZ

M320964

MCZ

M320965

MCZ

M320967

MCZ

M320968

MCZ

M320971

MCZ

M382341

MCZ

M382364

MCZ

M382380

MCZ

N141771

NMNH

N152408

NMNH

N592677

NMNH

N133176

NMNH

N150528

NMNH

N152520

NMNH

N152527

NMNH

N153056

NMNH

N153057

NMNH

N181808

NMNH

N184442

NMNH

N184833

NMNH

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Athrey, G., Lindsay, D.L., Lance, R.F. et al. Crumbling diversity: comparison of historical archived and contemporary natural populations indicate reduced genetic diversity and increasing genetic differentiation in the golden-cheeked warbler. Conserv Genet 12, 1345–1355 (2011). https://doi.org/10.1007/s10592-011-0235-8

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