Abstract
Environmental solid waste bioremediation is a method of treating contaminated solid waste that involves changing ecological conditions to foster the growth of a broad spectrum of microorganisms and the destruction of the target contaminants. A wide range of microorganisms creates metabolites that may break down and change solid waste-based pollution to various value-added molecules. Diverse bioremediation technologies, their limitations, and the procedure involve recycling solid waste materials from the environment. The existing environmental solid waste disposal services are insufficient and must be upgraded with more lucrative recovery, recycling, and reuse technologies to decrease the enormous expenditures in treatment procedures. Bioremediation of solid waste eliminates the toxic components. It restores the site with the advent of potential microbial communities towards solid waste valorization utilizing agriculture solid waste, organic food waste, plastic solid waste, and multiple industrial solid wastes.Bioengineering on diverse ranges of microbial regimes has accelerated to provide extra momentum toward solid waste recycling and valorization. This approach increases the activity of bioremediating microbes in the commercial development of waste treatment techniques and increases the cost-effective valuable product generation. This framework facilitates collaboration between solid waste and utilities. It can aid in establishing a long-term management strategy for recycling development with the advent of a broad spectrum of potential microbial assemblages, increasing solid waste contamination tolerance efficiency and solid waste degradability. The current literature survey extensively summarises solid waste remediation valorization using a broad spectrum of microbial assemblages with special emphasis on bioengineering-based acceleration. This approach is to attain sustainable environmental management and value-added biomolecule generation.
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Abdulredha M, Al Khaddar R, Jordan D, Kot P, Abdulridha A, Hashim K (2018) Estimating solid waste generation by hospitality industry during major festivals: A quantification model based on multiple regression. Waste Manag 77:388–400. https://doi.org/10.1016/j.wasman.2018.04.025
Abdulyekeen KA, Giwa SO, Ibrahim AA (2022) Bioremediation of used motor oil-contaminated soil using animal dung as stimulants. In: Mahajan S, Varma A (eds) Soil Biology. Springer International Publishing, Cham, pp 185–215
Abo-Almaged HH, Moustafa AF, Ismail AM, Amin SK, Abadir MF (2017) Hydrothermal treatment management of high alumina waste for synthesis of nanomaterials with new morphologies. Interceram 66:172–179. https://doi.org/10.1007/bf03401212
Adebami GE, Adebayo-Tayo BC (2020) Development of cellulolytic strain by genetic engineering approach for enhanced cellulase production. In: Kuila A, Sharma V (eds) Genetic and Metabolic Engineering for Improved Biofuel Production from Lignocellulosic Biomass. Elsevier, pp 103–136
Adegboye MF, Ojuederie OB, Talia PM, Babalola OO (2021) Bioprospecting of microbial strains for biofuel production: metabolic engineering, applications, and challenges. Biotechnol Biofuels 14:5. https://doi.org/10.1186/s13068-020-01853-2
Ahorsu R, Medina F, Constantí M (2018) Significance and challenges of biomass as a suitable feedstock for bioenergy and biochemical production: A review. Energies 11:3366. https://doi.org/10.3390/en11123366
Ali N, Athar MA, Khan YH, Idrees M, Ahmad D (2014) Regulation and improvement of cellulase production: Recent advances. Nat Resour 05:857–863. https://doi.org/10.4236/nr.2014.514073
Alori ET, Glick BR, Babalola OO (2017) Microbial phosphorus solubilization and its potential for use in sustainable agriculture. Front Microbiol 8:971. https://doi.org/10.3389/fmicb.2017.00971
Amin SK, Roushdy MH, Abdallah HAM, Moustafa AF, Abadir MF (2020) Preparation and characterization of ceramic nanofiltration membrane prepared from hazardous industrial waste. Int J Appl Ceram Technol 17:162–174. https://doi.org/10.1111/ijac.13311
An X, Zong Z, Zhang Q, Li Z, Zhong M, Long H, Cai C, Tan X (2022) Novel thermo-alkali-stable cellulase-producing Serratia sp. AXJ-M cooperates with Arthrobacter sp. AXJ-M1 to improve degradation of cellulose in papermaking black liquor. J Hazard Mater 421:126811. https://doi.org/10.1016/j.jhazmat.2021.126811
Angajala G, Aruna V, Pavan P, Guruprasad Reddy P (2022) Biocatalytic one pot three component approach: Facile synthesis, characterization, molecular modelling and hypoglycemic studies of new thiazolidinedione festooned quinoline analogues catalyzed by alkaline protease from Aspergillus niger. Bioorg Chem 119:105533. https://doi.org/10.1016/j.bioorg.2021.105533
Anichebe CO, Bright U, Okoye EL, Onochie CC (2019) Comparative study on single cell protein (SCP) production by Trichoderma viride from pineapple wastes and banana peels. SSRN Electron J https://doi.org/10.2139/ssrn.3448990
Arun KB, Madhavan A, Sindhu R, Binod P, Pandey A, Reshmy R, Sirohi R (2020) Remodeling agro-industrial and food wastes into value-added bioactives and biopolymers. Ind Crops Prod 154:112621. https://doi.org/10.1016/j.indcrop.2020.112621
Awasthi AK, Li J, Pandey AK, Khan J (2019) An overview of the potential of bioremediation for contaminated soil from municipal solid waste site. In: Bharagava RN, Chowdhary P (eds) Emerging and Eco-Friendly Approaches for Waste Management. Springer Singapore, Singapore, pp 59–68
Ayangbenro AS, Babalola OO (2017) A new strategy for heavy metal polluted environments: A review of microbial biosorbents. Int J Environ Res Public Health 14:94. https://doi.org/10.3390/ijerph14010094
Azaizeh H, Abu Tayeh HN, Gerchman Y (2020) Valorisation of olive oil industry solid waste and production of ethanol and high value-added biomolecules. In: Sani RK (ed) RathinamNK Biovalorisation of Wastes to Renewable Chemicals and Biofuels. Elsevier, pp 27–40
Azubuike CC, Chikere CB, Okpokwasili GC (2016) Bioremediation techniques-classification based on site of application: principles, advantages, limitations and prospects. World J MicrobiolBiotechnol 32:180. https://doi.org/10.1007/s11274-016-2137-x
Azura Azami N, Ira Aryani W, Aik-Hong T, Amirul AA (2019) Purification and characterization of new bio-plastic degrading enzyme from Burkholderia cepacia DP1. Protein Expr Purif 155:35–42. https://doi.org/10.1016/j.pep.2018.10.008
Bardhan P, Gupta K, Mandal M (2019) Microbes as bio-resource for sustainable production of biofuels and other bioenergy products. In: Singh JS, Singh DP (eds) New and Future Developments in Microbial Biotechnology and Bioengineering. Elsevier, pp 205–222
Ben Fekih I, Zhang C, Li YP, Zhao Y, Alwathnani HA, Saquib Q, Rensing C, Cervantes C (2018) Distribution of arsenic resistance genes in prokaryotes. Front Microbiol 9:2473. https://doi.org/10.3389/fmicb.2018.02473
Bigley AN, Raushel FM (2019) The evolution of phosphotriesterase for decontamination and detoxification of organophosphorus chemical warfare agents. Chem Biol Interact 308:80–88. https://doi.org/10.1016/j.cbi.2019.05.023
Brim H, Venkateswaran A, Kostandarithes HM, Fredrickson JK, Daly MJ (2003) Engineering Deinococcus geothermalis for bioremediation of high-temperature radioactive waste environments. Appl Environ Microbiol 69:4575–4582. https://doi.org/10.1128/AEM.69.8.4575-4582.2003
Bui NK, Nguyen TL, Phan KD, Nguyen AT (2020) Legal framework for recycling domestic solid waste in Vietnam: situation and recommendation. E3S Web Conf 164:11009. https://doi.org/10.1051/e3sconf/202016411009
Camenzuli D, Freidman BL (2015) On-site and in situ remediation technologies applicable to petroleum hydrocarbon contaminated sites in the Antarctic and Arctic. Polar Res 34:24492. https://doi.org/10.3402/polar.v34.24492
Carbot-Rojas DA, Escobar-Jiménez RF, Gómez-Aguilar JF, Téllez-Anguiano AC (2017) A survey on modeling, biofuels, control and supervision systems applied in internal combustion engines. Renew Sustain Energy Rev 73:1070–1085. https://doi.org/10.1016/j.rser.2017.01.168
Chandra Paul S, Mbewe PBK, Kong SY, Šavija B (2019) Agricultural solid waste as source of supplementary cementitious materials in developing countries. Materials (basel) 12:1112. https://doi.org/10.3390/ma12071112
Chen X, Zhao Y, Zhang C, Zhang D, Yao C, Meng Q, Zhao R, Wei Z (2020) Speciation, toxicity mechanism and remediation ways of heavy metals during composting: A novel theoretical microbial remediation method is proposed. J Environ Manage 272:111109. https://doi.org/10.1016/j.jenvman.2020.111109
Chilakamarry CR, Mimi Sakinah AM, Zularisam AW, Sirohi R, Khilji IA, Ahmad N, Pandey A (2022) Advances in solid-state fermentation for bioconversion of agricultural wastes to value-added products: Opportunities and challenges. BioresourTechnol 343:126065. https://doi.org/10.1016/j.biortech.2021.126065
Chintagunta AD, Zuccaro G, Kumar M, Kumar SJ, Garlapati VK, Postemsky PD, Kumar NS, Chandel AK (2021) Biodiesel production from lignocellulosic biomass using oleaginous microbes: Prospects for integrated biofuel production. Front Microbiol 12:658284. https://doi.org/10.3389/fmicb.2021.658284
Choudhary M, Kumar R, Datta A, Nehra V, Garg N (2017) Bioremediation of heavy metals by microbes. In: Arora S, Singh A, Singh Y (eds) Bioremediation of Salt Affected Soils: An Indian Perspective. Springer International Publishing, Cham, pp 233–255
Cristorean C, Micle V, Sur LM (2016) A critical analysis of ex-situ bioremediation technologies of hydrocarbon polluted soils. J Env Res Protect 13:17–29
Costa JAV, Freitas BCB, Moraes L, Zaparoli M, Morais MG (2020) Progress in the physicochemical treatment of microalgae biomass for value-added product recovery. BioresourTechnol 301:122727. https://doi.org/10.1016/j.biortech.2019.122727
Cowan AR, Costanzo CM, Benham R, Loveridge EJ, Moody SC (2022) Fungal bioremediation of polyethylene: Challenges and perspectives. J ApplMicrobiol 132:78–89. https://doi.org/10.1111/jam.15203
Czaplicka M, Cieślik E, Komosiński B, Rachwał T (2019) Emission factors for biofuels and coal combustion in a domestic boiler of 18 kW. Atmosphere (basel) 10:771. https://doi.org/10.3390/atmos10120771
Dabbagh F, Moradpour Z, Ghasemian A (2019) Microbial products and biotechnological applications thereof: Proteins, enzymes, secondary metabolites, and valuable chemicals. In: Singh D, Prabha R (eds) Microbial Interventions in Agriculture and Environment. Springer Singapore, Singapore, pp 385–432
Dabe SJ, Prasad PJ, Vaidya AN, Purohit HJ (2019) Technological pathways for bioenergy generation from municipal solid waste: Renewable energy option. Environ Prog Sustain Energy 38:654–671. https://doi.org/10.1002/ep.12981
Dar MA, Syed R, Pawar KD, Dhole NP, Xie R, Pandit RS, Sun J (2022) Evaluation and characterization of the cellulolytic bacterium, Bacillus pumilus SL8 isolated from the gut of oriental leafworm Spodoptera litura: An assessment of its potential value for lignocellulose bioconversion. Environ Technolinnov 27:102459. https://doi.org/10.1016/j.eti.2022.102459
Demir H, Tarı C (2014) Valorization of wheat bran for the production of polygalacturonase in SSF of Aspergillus sojae. Ind Crops Prod 54:302–309. https://doi.org/10.1016/j.indcrop.2014.01.025
Dhanya BS, Mishra A, Chandel AK, Verma ML (2020) Development of sustainable approaches for converting the organic waste to bioenergy. Sci Total Environ 723:138109. https://doi.org/10.1016/j.scitotenv.2020.138109
Dharani SR, Srinivasan R, Sarath R, Ramya M (2020) Recent progress on engineering microbial alginate lyases towards their versatile role in biotechnological applications. Folia Microbiol (praha) 65:937–954. https://doi.org/10.1007/s12223-020-00802-8
Di Maria F, Mastrantonio M, Uccelli R (2021) The life cycle approach for assessing the impact of municipal solid waste incineration on the environment and on human health. Sci Total Environ 776:145785. https://doi.org/10.1016/j.scitotenv.2021.145785
Dias M, Melo MM, Schwan RF, Silva CF (2015) A new alternative use for coffee pulp from semi-dry process to β-glucosidase production by Bacillus subtilis. Lett ApplMicrobiol 61:588–595. https://doi.org/10.1111/lam.12498
Dille D, Archana K (2017) Biotechnology for solid waste management–a critical. http://www.oaijse.com/VolumeArticles/FullTextPDF/77_OAIJSE_BIOTECHNOLOGY_FOR_SOLID_WASTE_MANAGEMENT_%E2%80%93_A_CRITICAL_REVIEW_11.pdf. Accessed 7 February 2022
Ding Y, Zhao J, Liu J-W, Zhou J, Cheng L, Zhao J, Shao Z, Iris Ç, Pan B, Li X, Hu ZT (2021) A review of China’s municipal solid waste (MSW) and comparison with international regions: Management and technologies in treatment and resource utilization. J Clean Prod 293:126144. https://doi.org/10.1016/j.jclepro.2021.126144
Druzhinina IS, Kubicek CP (2017) Genetic engineering of Trichoderma reesei cellulases and their production. MicrobBiotechnol 10:1485–1499. https://doi.org/10.1111/1751-7915.12726
El-Bakry M, Abraham J, Cerda A, Barrena R, Ponsá S, Gea T, Sánchez A (2015) From wastes to high value added products: Novel aspects of SSF in the production of enzymes. Crit Rev Environ Sci Technol 45:1999–2042. https://doi.org/10.1080/10643389.2015.1010423
Ellilä S, Fonseca L, Uchima C, Cota J, Goldman GH, Saloheimo M, Sacon V, Siika-Aho M (2017) Development of a low-cost cellulase production process using Trichoderma reesei for Brazilian biorefineries. Biotechnol Biofuels 10:30. https://doi.org/10.1186/s13068-017-0717-0
Embaby AM, Masoud AA, Marey HS, Shaban NZ, Ghonaim TM (2014) Raw agro-industrial orange peel waste as a low cost effective inducer for alkaline polygalacturonase production from Bacillus licheniformis SHG10. Springerplus 3:327. https://doi.org/10.1186/2193-1801-3-327
Falade AO (2021) Valorization of agricultural wastes for production of biocatalysts of environmental significance: towards a sustainable environment. Environ Sustain 4:317–328. https://doi.org/10.1007/s42398-021-00183-9
Febrianti F (2017) Bioethanol production from tofu waste by simultaneous saccharification and fermentation (SSF) using microbial consortium. IJTech 8:898. https://doi.org/10.14716/ijtech.v8i5.872
Fujii T, Matsushika A (2020) The putative transcription factor gene thaB regulates cellulase and xylanase production at the enzymatic and transcriptional level in the fungus Talaromyces cellulolyticus. Appl Biochem Biotechnol 190:1360–1370. https://doi.org/10.1007/s12010-019-03190-z
García-Fraga B, da Silva AF, López-Seijas J, Sieiro C (2015) Optimized expression conditions for enhancing production of two recombinant chitinolytic enzymes from different prokaryote domains. Bioprocess Biosyst Eng 38:2477–2486. https://doi.org/10.1007/s00449-015-1485-5
Gavrilescu M (2020) Biomass—a resource for environmental bioremediation and bioenergy. In: Gupta VK, Treichel H, Kuhad RC, Rodriguez-Cout S (eds) Recent Developments in Bioenergy Research. Elsevier, pp 19–63
Ghorai P, Ghosh D (2022a) Ameliorating the performance of NPK biofertilizers to attain sustainable agriculture with special emphasis on bioengineering. Bioresourtechnol Rep 19:101117. https://doi.org/10.1016/j.biteb.2022.101117
Ghorai P, Ghosh D (2022b) Sustainable approach for insoluble phosphate recycling from wastewater effluents. In: Haq I, Kalamdhad AS, Dash S (eds) Environmental Degradation: Monitoring, Assessment and Treatment Technologies. Springer International Publishing, Cham, pp 77–86
Golbaz S, Zamanzadeh MZ, Pasalari H, Farzadkia M (2021) Assessment of co-composting of sewage sludge, woodchips, and sawdust: feedstock quality and design and compilation of computational model. Environ Sci Pollut Res Int 28:12414–12427. https://doi.org/10.1007/s11356-020-11237-6
Gong Y, Tang G, Wang M, Li J, Xiao W, Lin J, Liu Z (2014) Direct fermentation of amorphous cellulose to ethanol by engineered Saccharomyces cerevisiae coexpressing Trichoderma viride EG3 and BGL1. J Gen Appl Microbiol 60:198–206. https://doi.org/10.2323/jgam.60.198
Gramegna G, Scortica A, Scafati V, Ferella F, Gurrieri L, Giovannoni M, Bassi R, Sparla F, Mattei B, Benedetti M (2020) Exploring the potential of microalgae in the recycling of dairy wastes. Bioresourtechnol Rep 12:100604. https://doi.org/10.1016/j.biteb.2020.100604
Gupta C, Prakash D (2020) Novel bioremediation methods in waste management: Novel bioremediation methods. In: Khosrow-Pour M (ed) Waste management: concepts, methodologies, tools, and applications. IGI Global, Hershey, pp 1627–1643
Habib A, Bhatti HN, Iqbal M (2020) Metallurgical processing strategies for metals recovery from industrial slags. Z Phys Chem (n f) 234:201–231. https://doi.org/10.1515/zpch-2019-0001
Han Z, Zeng D, Mou Z, Shi G, Zhang Y, Lou Z (2019) A novel spatiotemporally anaerobic/semi-aerobic bioreactor for domestic solid waste treatment in rural areas. Waste Manag 86:97–105. https://doi.org/10.1016/j.wasman.2019.01.034
Herman NA, Kim SJ, Li JS, Cai W, Koshino H, Zhang W (2017) The industrial anaerobe Clostridium acetobutylicum uses polyketides to regulate cellular differentiation. Nat Commun 8:1514. https://doi.org/10.1038/s41467-017-01809-5
Huang K, Chen C, Shen Q, Rosen BP, Zhao FJ (2015) Genetically engineering Bacillus subtilis with a heat-resistant arsenite methyltransferase for bioremediation of arsenic-contaminated organic waste. Appl Environ Microbiol 81:6718–6724. https://doi.org/10.1128/AEM.01535-15
Hussain A, Rehman F, Rafeeq H, Waqas M, Asghar A, Afsheen N, Rahdar A, Bilal M, Iqbal HM (2022) In-situ, Ex-situ, and nano-remediation strategies to treat polluted soil, water, and air - A review. Chemosphere 289:133252. https://doi.org/10.1016/j.chemosphere.2021.133252
Igiri BE, Okoduwa SIR, Idoko GO, Akabuogu EP, Adeyi AO, Ejiogu IK (2018) Toxicity and bioremediation of heavy metals contaminated ecosystem from tannery wastewater: A review. J Toxicol 2018:2568038. https://doi.org/10.1155/2018/2568038
Ihedioha JN, Ukoha PO, Ekere NR (2017) Ecological and human health risk assessment of heavy metal contamination in soil of a municipal solid waste dump in Uyo, Nigeria. Environ Geochem Health 39:497–515. https://doi.org/10.1007/s10653-016-9830-4
Jin X, Song J, Liu G-Q (2020) Bioethanol production from rice straw through an enzymatic route mediated by enzymes developed in-house from Aspergillus fumigatus. Energy (oxf) 190:116395. https://doi.org/10.1016/j.energy.2019.116395
Joshi G, Pandey JK, Rana S, Rawat DS (2017) Challenges and opportunities for the application of biofuel. Renew Sustain Energy Rev 79:850–866. https://doi.org/10.1016/j.rser.2017.05.185
Kalayu G (2019) Phosphate solubilizing microorganisms: Promising approach as biofertilizers. Int j Agron 2019:1–7. https://doi.org/10.1155/2019/4917256
Kandasamy R, Venkatesan SK, Uddin MI, Ganesan S (2020) Anaerobic biovalorization of leather industry solid waste and production of high value-added biomolecules and biofuels. In: Rathinam NK, Sani RK (eds) Biovalorisation of Wastes to Renewable Chemicals and Biofuels. Elsevier, pp 3–25
Kapahi M, Sachdeva S (2019) Bioremediation options for heavy metal pollution. J Health Pollut 9:191203. https://doi.org/10.5696/2156-9614-9.24.191203
Katileviciute A, Plakys G, Budreviciute A, Onder K, Damiati S, Kodzius R (2019) A sight to wheat bran: High value-added products. Biomol 9:887. https://doi.org/10.3390/biom9120887
Kaur D, Singh A, Kumar A, Gupta S (2020) Genetic engineering approaches and applicability for the bioremediation of metalloids. In: Tripathi DK, Singh VP (eds) ChauhanDK, Sharma S, Prasad SM, Kis N(eds) Plant Life Under Changing Environment. Elsevier, pp 207–235
Knez Ž, Hrnčič MK, Čolnik M, Škerget M (2018) Chemicals and value added compounds from biomass using sub- and supercritical water. J Supercrit Fluids 133:591–602. https://doi.org/10.1016/j.supflu.2017.08.011
Kumar V, Binod P, Sindhu R, Gnansounou E, Ahluwalia V (2018) Bioconversion of pentose sugars to value added chemicals and fuels: Recent trends, challenges and possibilities. BioresourTechnol 269:443–451. https://doi.org/10.1016/j.biortech.2018.08.042
Kumaravel V, Bartlett J, Pillai SC (2020) Photoelectrochemical conversion of carbon dioxide (CO2) into fuels and value-added products. ACS Energy Lett 5:486–519. https://doi.org/10.1021/acsenergylett.9b02585
Kurumbang NP, Dvorak P, Bendl J, Brezovsky J, Prokop Z, Damborsky J (2014) Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant. ACS Synth Biol 3:172–181. https://doi.org/10.1021/sb400147n
Lee SY, Sankaran R, Chew KW, Tan CH, Krishnamoorthy R, Chu DT, Show PL (2019) Waste to bioenergy: a review on the recent conversion technologies. BMC Energy 1:1–22. https://doi.org/10.1186/s42500-019-0004-7
Li C, Sun Y, Yue Z, Huang M, Wang J, Chen X, An X, Zang H, Li D, Hou N (2018) Combination of a recombinant bacterium with organonitrile-degrading and biofilm-forming capability and a positively charged carrier for organonitriles removal. J Hazard Mater 353:372–380. https://doi.org/10.1016/j.jhazmat.2018.03.058
Li C, Yue Z, Feng F, Xi C, Zang H, An X, Liu K (2016) A novel strategy for acetonitrile wastewater treatment by using a recombinant bacterium with biofilm-forming and nitrile-degrading capability. Chemosphere 161:224–232. https://doi.org/10.1016/j.chemosphere.2016.07.019
Li H, Cong Y, Lin J, Chang Y (2015) Enhanced tolerance and accumulation of heavy metal ions by engineered Escherichia coli expressing Pyrusi calleryana phytochelatin synthase. J Basic Microbiol 55:398–405. https://doi.org/10.1002/jobm.201300670
Li Q, Wu Y-J (2014) A safety type genetically engineered bacterium with red fluorescence which can be used to degrade organophosphorus pesticides. Int J Environ Sci Technol (tehran) 11:891–898. https://doi.org/10.1007/s13762-013-0269-1
Liu H, Sun J, Chang J-S, Shukla P (2018a) Engineering microbes for direct fermentation of cellulose to bioethanol. Crit Rev Biotechnol 38:1089–1105. https://doi.org/10.1080/07388551.2018.1452891
Liu L, Li W, Song W, Guo M (2018b) Remediation techniques for heavy metal-contaminated soils: Principles and applicability. Sci Total Environ 633:206–219. https://doi.org/10.1016/j.scitotenv.2018.03.161
López-Fernández J, DolorsBenaiges M, Valero F (2021) Second- and third-generation biodiesel production with immobilised recombinant Rhizopus oryzae lipase: Influence of the support, substrate acidity and bioprocess scale-up. BioresourTechnol 334:125233. https://doi.org/10.1016/j.biortech.2021.125233
Madeira JV Jr, Contesini FJ, Calzado F, Rubio MV, Zubieta MP, Lopes DB, de Melo RR (2017) Agro-industrial residues and microbial enzymes. In: Brahmachari G, Demain AL, Adrio JL (eds) Biotechnology of Microbial Enzymes: production, biocatalysis and industrial applications. Elsevier, Tokyo, pp 475–511
Madhavan A, Arun KB, Sindhu R, Jose AA, Pugazhendhi A, Binod P, Sirohi R, Reshmy R, Awasthi MK (2022) Engineering interventions in industrial filamentous fungal cell factories for biomass valorization. BioresourTechnol 344:126209. https://doi.org/10.1016/j.biortech.2021.126209
Maina S, Kachrimanidou V, Koutinas A (2017) A roadmap towards a circular and sustainable bioeconomy through waste valorization. CurrOpin Green Sustain Chem 8:18–23. https://doi.org/10.1016/j.cogsc.2017.07.007
Malhotra H, Kaur S, Phale PS (2021) Conserved metabolic and evolutionary themes in microbial degradation of carbamate pesticides. Front Microbiol 12:648868. https://doi.org/10.3389/fmicb.2021.648868
Maqsood Q, Hussain N, Mumtaz M, Bilal M, Iqbal H (2022) Novel strategies and advancement in reducing heavy metals from the contaminated environment. Arch Microbiol 204:478. https://doi.org/10.1007/s00203-022-03087-2
McCarty PL, Criddle CS, Vogel TM (2020) Retrospective on microbial transformations of halogenated organics. Environ Sci Process Impacts 22:512–517. https://doi.org/10.1039/c9em00575g
Megharaj M, Venkateswarlu K, Naidu R (2014) Bioremediation. In: Wexler P (ed) Encyclopedia of Toxicology. Elsevier, pp 485–489
Melanouri E-M, Dedousi M, Diamantopoulou P (2022) Cultivating Pleurotus ostreatus and Pleurotus eryngii mushroom strains on agro-industrial residues in solid-state fermentation. Part I: Screening for growth, endoglucanase, laccase and biomass production in the colonization phase. Carbon Resour Convers 5:61–70. https://doi.org/10.1016/j.crcon.2021.12.004
Melnichuk N, Braia MJ, Anselmi PA, Meini MR, Romanini D (2020) Valorization of two agroindustrial wastes to produce alpha-amylase enzyme from Aspergillus oryzae by solid-state fermentation. Waste Manag 106:155–161. https://doi.org/10.1016/j.wasman.2020.03.025
Mengistu T, Gebrekidan H, Kibret K, Woldetsadik K, Shimelis B, Yadav H (2018) Comparative effectiveness of different composting methods on the stabilization, maturation and sanitization of municipal organic solid wastes and dried faecal sludge mixtures. Environ Syst Res 6. https://doi.org/10.1186/s40068-017-0079-4
Milano J, Ong HC, Masjuki HH, Chong WT, Lam MK, Loh PK, Vellayan V (2016) Microalgae biofuels as an alternative to fossil fuel for power generation. Renew Sustain Energy Rev 58:180–197. https://doi.org/10.1016/j.rser.2015.12.150
Millati R, Cahyono RB, Ariyanto T, Azzahrani IN, Putri RU, Taherzadeh MJ (2019) Agricultural, industrial, municipal, and forest wastes. In: Taherzadeh MJ, Bolton K, Wong J, Pandey A (eds) Sustainable Resource Recovery and Zero Waste Approaches. Elsevier, Netherlands, pp 1–22
Mishra V, Veeranna S, Kumar J (2020) Engineering bacterial aromatic dioxygenase genes to improve bioremediation. In: Pandey VC, Singh V (eds) Bioremediation of Pollutants. Elsevier, pp 161–185
Mohanan N, Montazer Z, Sharma PK, Levin DB (2020) Microbial and enzymatic degradation of synthetic plastics. Front Microbiol 11:580709. https://doi.org/10.3389/fmicb.2020.580709
Mohsin MZ, Omer R, Huang J, Mohsin A, Guo M, Qian J, Zhuang Y (2021) Advances in engineered Bacillus subtilis biofilms and spores, and their applications in bioremediation, biocatalysis, and biomaterials. Synth SystBiotechnol 6:180–191. https://doi.org/10.1016/j.synbio.2021.07.002
Moscoviz R, Trably E, Bernet N, Carrère H (2018) The environmental biorefinery: state-of-the-art on the production of hydrogen and value-added biomolecules in mixed-culture fermentation. Green Chem 20:3159–3179. https://doi.org/10.1039/c8gc00572a
Mund NK, Liu Y, Chen S (2022) Advances in metabolic engineering of cyanobacteria for production of biofuels. Fuel (Lond) 322:124117. https://doi.org/10.1016/j.fuel.2022.124117
Neofotis P, Huang A, Sury K, Chang W, Joseph F, Gabr A, Twary S, Qiu W, Holguin O, Polle JE (2016) Characterization and classification of highly productive microalgae strains discovered for biofuel and bioproduct generation. Algal Res 15:164–178. https://doi.org/10.1016/j.algal.2016.01.007
Omokhagbor Adams G, Tawari Fufeyin P, Eruke Okoro S, Ehinomen I (2020) Bioremediation, Biostimulation and Bioaugmention: A Review. Int J Environ Bioremediat Biodegrad 3:28–39. https://doi.org/10.12691/ijebb-3-1-5
Patel AK, Singhania RR, Albarico FPJB, Pandey A, Chen CW, Dong CD (2022) Organic wastes bioremediation and its changing prospects. Sci Total Environ 824:153889. https://doi.org/10.1016/j.scitotenv.2022.153889
Pattanaik L, Pattnaik F, Saxena DK, Naik SN (2019) Biofuels from agricultural wastes. In: Basile A, Dalena F (eds) Second and Third Generation of Feedstocks. Elsevier, pp 103–142
Perera F (2017) Pollution from fossil-fuel combustion is the leading environmental threat to global pediatric health and equity: Solutions exist. Int J Environ Res Public Health 15. https://doi.org/10.3390/ijerph15010016
Peter AJ, Amalraj ELD, Talluri VR (2020) Commercial aspects of biofertilizers and biostimulants development utilizing rhizosphere microbes: Global and Indian scenario. In: Sharma SK, Singh UB, Sahu PK, Singh HV, Sharma PK (eds) rhizosphere microbes. Springer Singapore, Singapore, pp 655–682
Pleissner D, Venus J (2016) Utilization of protein-rich residues in biotechnological processes. ApplMicrobiolBiotechnol 100:2133–2140. https://doi.org/10.1007/s00253-015-7278-6
Pradhan A, Pahari A, Mohapatra S, Mishra BB (2017) Phosphate-solubilizing microorganisms in sustainable agriculture: Genetic mechanism and application. In: Adhya T, Mishra B, Annapurna K, Verma D, Kumar U (eds) Advances in Soil Microbiology: Recent Trends and Future Prospects. Springer Singapore, Singapore, pp 81–97
Qarni A, Billah M, Hussain K, Shah SH, Ahmed W, Alam S, Sheikh AA, Jafri L, Munir A, Malik KM, Khan N (2021) Isolation and characterization of phosphate solubilizing microbes from rock phosphate mines and their potential effect for sustainable agriculture. Sustainability 13:2151. https://doi.org/10.3390/su13042151
Rahnama N, Foo HL, Abdul Rahman NA, Ariff A, Md Shah UK (2014) Saccharification of rice straw by cellulase from a local Trichoderma harzianum SNRS3 for biobutanol production. BMC Biotechnol 14:103. https://doi.org/10.1186/s12896-014-0103-y
Rai AK, Al Makishah NH, Wen Z, Gupta G, Pandit S, Prasad R (2022) Recent developments in lignocellulosic biofuels, a renewable source of bioenergy. Fermentation 8:161. https://doi.org/10.3390/fermentation8040161
Raj T, Chandrasekhar K, Naresh Kumar A, Kim S-H (2022) Lignocellulosic biomass as renewable feedstock for biodegradable and recyclable plastics production: A sustainable approach. Renew Sustain Energy Rev 158:112130. https://doi.org/10.1016/j.rser.2022.112130
Rogers JN, Stokes B, Dunn J, Cai H, Wu M, Haq Z, Baumes H (2017) An assessment of the potential products and economic and environmental impacts resulting from a billion ton bioeconomy. Biofuel Bioprod Biorefin 11:110–128. https://doi.org/10.1002/bbb.1728
Rojas LA, Yáñez C, González M, Lobos S, Smalla K, Seeger M (2011) Characterization of the metabolically modified heavy metal-resistant Cupriavidus metallidurans strain MSR33 generated for mercury bioremediation. PLoS ONE 6:e17555. https://doi.org/10.1371/journal.pone.0017555
Saccomanno M, Hussain S, O’Connor NK, Beier P, Somlyay M, Konrat R, Murphy CD (2018) Biodegradation of pentafluorosulfanyl-substituted aminophenol in Pseudomonas spp. Biodegradation 29:259–270. https://doi.org/10.1007/s10532-018-9827-z
Saeid A, Prochownik E, Dobrowolska-Iwanek J (2018) Phosphorus solubilization by Bacillus species. Molecules 23:2897. https://doi.org/10.3390/molecules23112897
Samin G, Pavlova M, Arif MI, Postema CP, Damborsky J, Janssen DB (2014) A Pseudomonas putida strain genetically engineered for 1,2,3-trichloropropane bioremediation. Appl Environ Microbiol 80:5467–5476. https://doi.org/10.1128/AEM.01620-14
Sangavai C, Chellapandi P (2017) Amino acid catabolism-directed biofuel production in Clostridium sticklandii: An insight into model-driven systems engineering. Biotechnol Rep (amst) 16:32–43. https://doi.org/10.1016/j.btre.2017.11.002
Sanghvi G, Thanki A, Pandey S, Singh NK (2020) Engineered bacteria for bioremediation. In: Pandey VC, Singh V (eds) Bioremediation of Pollutants. Elsevier, pp 359–374
Saravanan A, Kumar PS, Jeevanantham S, Anubha M, Jayashree S (2022) Degradation of toxic agro-chemicals and pharmaceutical pollutants: Effective and alternative approaches toward photocatalysis. Environ Pollut 298:118844. https://doi.org/10.1016/j.envpol.2022.118844
Sayara T, Basheer-Salimia R, Hawamde F, Sánchez A (2020) Recycling of organic wastes through composting: Process performance and compost application in agriculture. Agronomy (Basel) 10:1838. https://doi.org/10.3390/agronomy10111838
Schmidt JE, Gaudin ACM (2018) What is the agronomic potential of biofertilizers for maize? A meta-analysis. FEMS Microbiol Ecol 94. https://doi.org/10.1093/femsec/fiy094
Schütz L, Gattinger A, Meier M, Müller A, Boller T, Mäder P, Mathimaran N (2017) Improving crop yield and nutrient use efficiency via biofertilization-A global meta-analysis. Front Plant Sci 8:2204. https://doi.org/10.3389/fpls.2017.02204
Shahnawaz M, Sangale MK, Ade AB (2019) Plastic waste disposal and reuse of plastic waste. Bioremediation Technology for Plastic Waste. Springer Singapore, Singapore, pp 21–30
Sharma I (2021) Bioremediation techniques for polluted environment: Concept, advantages, limitations, and prospects. In: Murillo-Tovar MA, Saldarriaga Noreña HA, Saeid A (eds) Trace Metals in the Environment - New Approaches and Recent Advances. IntechOpen
Silva RV, de Brito J, Lynn CJ, Dhir RK (2019) Environmental impacts of the use of bottom ashes from municipal solid waste incineration: A review. Resour Conserv Recycl 140:23–35. https://doi.org/10.1016/j.resconrec.2018.09.011
Singh A, Patel AK, Adsul M, Mathur A, Singhania RR (2017) Genetic modification: a tool for enhancing cellulase secretion. Biofuel Res J 4:600–610. https://doi.org/10.18331/brj2017.4.2.5
Soliman NK, Moustafa AF (2020) Industrial solid waste for heavy metals adsorption features and challenges; a review. J Mater Res Technol 9:10235–10253. https://doi.org/10.1016/j.jmrt.2020.07.045
Soliman NK, Moustafa AF, Aboud AA, Halim KSA (2019) Effective utilization of Moringa seeds waste as a new green environmental adsorbent for removal of industrial toxic dyes. J Mater Res Technol 8:1798–1808. https://doi.org/10.1016/j.jmrt.2018.12.010
Songsiriritthigul C, Lapboonrueng S, Pechsrichuang P, Pesatcha P, Yamabhai M (2010) Expression and characterization of Bacillus licheniformis chitinase (ChiA), suitable for bioconversion of chitin waste. BioresourTechnol 101:4096–4103. https://doi.org/10.1016/j.biortech.2010.01.036
Sun F, Ou Q, Wang N, Xuan Guo Z, Ou Y, Li N, Peng C (2020) Isolation and identification of potassium-solubilizing bacteria from Mikania micrantha rhizospheric soil and their effect on M. micrantha plants. Glob Ecol Conserv 23:e01141. https://doi.org/10.1016/j.gecco.2020.e01141
Sun G-D, Xu Y, Jin J-H, Zhong ZP, Liu Y, Luo M, Liu ZP (2012) Pilot scale ex-situ bioremediation of heavily PAHs-contaminated soil by indigenous microorganisms and bioaugmentation by a PAHs-degrading and bioemulsifier-producing strain. J Hazard Mater 233–234:72–78. https://doi.org/10.1016/j.jhazmat.2012.06.060
Sun Y, Li P, Sun Q, Liu X, Wang Y, Zhang B, Dong S, Hu X (2022) Insights into Ionic liquids-resistance mechanism and lignocellulose-degradation model of Aspergillus terreus in 1-ethyl-3-methylimidazolium acetate. Ind Crops Prod 178:114593. https://doi.org/10.1016/j.indcrop.2022.114593
Szulecka J (2019) Towards sustainable wood-based energy: Evaluation and strategies for mainstreaming sustainability in the sector. Sustainability 11:493. https://doi.org/10.3390/su11020493
Tara N, Afzal M, Ansari TM, Tahseen R, Iqbal S, Khan QM (2014) Combined use of alkane-degrading and plant growth-promoting bacteria enhanced phytoremediation of diesel contaminated soil. Int J Phytoremediation 16:1268–1277. https://doi.org/10.1080/15226514.2013.828013
Tran TTT, Pham HK, Nguyen HM (2020) Assessing the current status of rural domestic solid waste management in Nam Dinh province. J Mining Earth Sci 61:82–89. https://doi.org/10.46326/jmes.2020.61(6).09
Tripathi S, Sharma P, Chandra R (2021) Degradation of organometallic pollutants of distillery wastewater by autochthonous bacterial community in biostimulation and bioaugmentation process. BioresourTechnol 338:125518. https://doi.org/10.1016/j.biortech.2021.125518
Ul-Abdin Z, Anwar W, Khitab A (2022) Microbiologically induced deterioration of concrete. In: Iqbal HMN, Nguyen TA, Bilal M, Yasin G (eds) Biodegradation and Biodeterioration At the Nanoscale. Elsevier, pp 389–403
Verma S, Bhatt P, Verma A, Mudila H, Prasher P, Rene ER (2021) Microbial technologies for heavy metal remediation: effect of process conditions and current practices. Clean Technol Environ Policy. https://doi.org/10.1007/s10098-021-02029-8
Verma S, Kuila A (2019) Bioremediation of heavy metals by microbial process. Environ Technolinnov 14:100369. https://doi.org/10.1016/j.eti.2019.100369
Vizuete J, Pérez-López M, Míguez-Santiyán MP, Hernández-Moreno D (2019) Mercury (Hg), lead (Pb), cadmium (Cd), selenium (Se), and arsenic (as) in liver, kidney, and feathers of gulls: A review. Rev Environ ContamToxicol 247:85–146. https://doi.org/10.1007/398_2018_16
Wang C, Xin F, Kong X, Zhao J, Dong W, Zhang W, Ma J, Wu H, Jiang M (2018) Enhanced isopropanol-butanol-ethanol mixture production through manipulation of intracellular NAD(P)H level in the recombinant Clostridium acetobutylicum XY16. Biotechnol Biofuels 11:12. https://doi.org/10.1186/s13068-018-1024-0
Wasi S, Jeelani G, Ahmad M (2008) Biochemical characterization of a multiple heavy metal, pesticides and phenol resistant Pseudomonas fluorescens strain. Chemosphere 71:1348–1355. https://doi.org/10.1016/j.chemosphere.2007.11.023
Yan F, Wei R, Cui Q, Bornscheuer UT, Liu YJ (2021) Thermophilic whole-cell degradation of polyethylene terephthalate using engineered Clostridium thermocellum. Microb Biotechnol 14:374–385. https://doi.org/10.1111/1751-7915.13580
Zabermawi NM, Alsulaimany FAS, El-Saadony MT, El-Tarabily KA (2022) New eco-friendly trends to produce biofuel and bioenergy from microorganisms: An updated review. Saudi J Biol Sci. https://doi.org/10.1016/j.sjbs.2022.02.024
Zabłocka-Godlewska E, Przystaś W, Grabińska-Sota E (2014) Decolourisation of different dyes by two Pseudomonas strains under various growth conditions. Water Air Soil Pollut 225:1846. https://doi.org/10.1007/s11270-013-1846-0
Zeyaullah M, Haque S, Nabi G, Nand KN, Ali A (2010) Molecular cloning and expression of bacterial mercuric reductase gene. Afr J Biotechnol 9:3714–3718. https://doi.org/10.4314/ajb.v9i25
Zhang H, Yuan X, Xiong T, Wang H, Jiang L (2020) Bioremediation of co-contaminated soil with heavy metals and pesticides: Influence factors, mechanisms and evaluation methods. Chem Eng J 398:125657. https://doi.org/10.1016/j.cej.2020.125657
Zhao Y, Che Y, Zhang F, Wang J, Gao W, Zhang T, Yang C (2021) Development of an efficient pathway construction strategy for rapid evolution of the biodegradation capacity of Pseudomonas putida KT2440 and its application in bioremediation. Sci Total Environ 761:143239. https://doi.org/10.1016/j.scitotenv.2020.143239
Zheng Y-M, Xi B-D, Shan G-C, Yu MD, Cui J, Wei KH, Liu HB, He XS (2021) High proportions of petroleum loss ascribed to volatilization rather than to microbial degradation in greenhouse-enhanced biopile. J Clean Prod 303:127084. https://doi.org/10.1016/j.jclepro.2021.127084
Zhou M-H, Shen S-L, Xu Y-S, Zhou A-N (2019) New policy and implementation of municipal solid waste classification in Shanghai, China. Int J Environ Res Public Health 16:3099. https://doi.org/10.3390/ijerph16173099
Zhou Q, Zhang J, Chen J (2022) Methylation of arsenic differs with substrates in Arcticibacter tournemirensis R1 from an As-contaminated paddy soil. Sci Total Environ 838:156527. https://doi.org/10.1016/j.scitotenv.2022.156527
Zouboulis AI, Moussas PA, Psaltou SG (2019) Groundwater and Soil Pollution: Bioremediation. In: Nriagu JO (ed) Encyclopedia of Environmental Health. Elsevier, pp 369–381
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Dr. Dipankar Ghosh performs construction and conceptualization of the draft, literature survey, final drafting, editing, proofreading, and supervision. All authors have approved the review article for publication; Palash Ghorai performs an extensive literature review, drafting, compilation, and generation of figures and tables including formatting; Soumita Sarkar, Kumar Sagar Maiti, Serma Rimil Hansda, and Parna Das have performed literature survey, initial drafting, and gather relevant dataset for tables and figures.
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Ghosh, D., Ghorai, P., Sarkar, S. et al. Microbial assemblage for solid waste bioremediation and valorization with an essence of bioengineering. Environ Sci Pollut Res 30, 16797–16816 (2023). https://doi.org/10.1007/s11356-022-24849-x
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DOI: https://doi.org/10.1007/s11356-022-24849-x