Abstract
Investigation of genetic diversity is essential for the selection of parents for crop breeding and conservation of genetic resources. To estimate the genetic variability and population structure in the midst of 45 accessions of sponge gourd brought together from different geographical areas of India, morphological traits and two molecular markers, ISSR and SCoT markers were compared. Principal components analysis of 20 morphological traits showed 72.70% variability and significant positive correlations between fruit traits. All three marker techniques clustered all accessions into two groups with few outgroups. High level of polymorphism was observed among ISSR (74.6%) and SCoT (71.5%) primers. The Bayesian model revealed the hidden grouping and showed admixture type of population. The diversity pattern is influenced by genetic marker used, as different molecular markers have different polymorphism evaluation efficiency. This study can be helpful in amplifying the genetic base and selection of specific traits for breeding. Thus, ISSR and SCoT markers are potential marker for identification in sponge gourd and provide valuable data on its genetic correlation and structure.
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Abbreviations
- UPGMA:
-
Un-weighted pair group method with arithmetic average
- ISSR:
-
Inter simple sequences repeat
- PIC:
-
Polymorphism information content
- PCA:
-
Principal component analysis
- SCoT:
-
Start codon targeted
- PCR:
-
Polymerase chain reaction
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We are grateful to the Head, Division of Genomic Resources and the Director, National Bureau of Plant Genetic Resources for providing access to the facilities.
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Tyagi, R., Sharma, V., Sureja, A.K. et al. Genetic diversity and population structure detection in sponge gourd (Luffa cylindrica) using ISSR, SCoT and morphological markers. Physiol Mol Biol Plants 26, 119–131 (2020). https://doi.org/10.1007/s12298-019-00723-y
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DOI: https://doi.org/10.1007/s12298-019-00723-y