Skip to main content

A High-Throughput Strategy for T-Cell Receptor Cloning and Expression

  • Protocol
  • First Online:
T-Cell Repertoire Characterization

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2574))

  • 1722 Accesses

Abstract

Expression of T-cell receptor (TCR) genes is a critical step for TCR characterization and epitope identification. The recent interest in using specific TCRs for cancer immunotherapy has further increased the demand for practical and robust methods to rapidly clone and express TCRs. We show that a recombination-based cloning protocol facilitates simple and rapid transfer of the TCR transgene into different expression systems. In this protocol, we first constructed all the human TRAV and TRBV genes into individual plasmid. To clone any TCR, we only need to ligate a short CDR3 fragment to its corresponding V gene plasmid using Golden Gate cloning. This strategy significantly improves the efficiency of individual TCR cloning and mutagenesis, providing a flexible high-throughput method for TCR analysis and TCR-mediated therapeutics.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Arstila TP et al (1999) A direct estimate of the human alphabeta T cell receptor diversity. Science 286:958–961. https://doi.org/10.1126/science.286.5441.958

    Article  PubMed  CAS  Google Scholar 

  2. Davis MM, Bjorkman PJ (1988) T-cell antigen receptor genes and T-cell recognition. Nature 334:395–402. https://doi.org/10.1038/334395a0

    Article  PubMed  CAS  Google Scholar 

  3. Qi Q et al (2014) Diversity and clonal selection in the human T-cell repertoire. Proc Natl Acad Sci U S A 111:13139–13144. https://doi.org/10.1073/pnas.1409155111

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  4. Shortman K, Egerton M, Spangrude GJ, Scollay R (1990) The generation and fate of thymocytes. Semin Immunol 2:3–12

    PubMed  CAS  Google Scholar 

  5. Six A et al (2013) The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis. Front Immunol 4:413. https://doi.org/10.3389/fimmu.2013.00413

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  6. Dash P et al (2011) Paired analysis of TCRalpha and TCRbeta chains at the single-cell level in mice. J Clin Invest 121:288–295. https://doi.org/10.1172/JCI44752

    Article  PubMed  CAS  Google Scholar 

  7. Han A, Glanville J, Hansmann L, Davis MM (2014) Linking T-cell receptor sequence to functional phenotype at the single-cell level. Nat Biotechnol 32:684. https://doi.org/10.1038/nbt.2938

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  8. Kobayashi E et al (2013) A new cloning and expression system yields and validates TCRs from blood lymphocytes of patients with cancer within 10 days. Nat Med 19:1542–1546. https://doi.org/10.1038/nm.3358

    Article  PubMed  CAS  Google Scholar 

  9. Guo XZ et al (2016) Rapid cloning, expression, and functional characterization of paired alphabeta and gammadelta T-cell receptor chains from single-cell analysis. Mol Ther Methods Clin Dev 3:15054. https://doi.org/10.1038/mtm.2015.54

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  10. Hu Z et al (2018) A cloning and expression system to probe T-cell receptor specificity and assess functional avidity to neoantigens. Blood 132:1911–1921. https://doi.org/10.1182/blood-2018-04-843763

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  11. Glanville J et al (2017) Identifying specificity groups in the T cell receptor repertoire. Nature 547:94-+. https://doi.org/10.1038/nature22976

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  12. Huang H, Wang C, Rubelt F, Scriba TJ, Davis MM (2020) Analyzing the mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening. Nat Biotechnol 38:1194–1202. https://doi.org/10.1038/s41587-020-0505-4

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  13. Rosskopf S et al (2018) A Jurkat 76 based triple parameter reporter system to evaluate TCR functions and adoptive T cell strategies. Oncotarget 9:17608–17619. https://doi.org/10.18632/oncotarget.24807

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mark M. Davis .

Editor information

Editors and Affiliations

1 Electronic Supplementary Material

Data 1

(XLSX 36 kb)

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Xia, Q., Huang, H., Davis, M.M. (2022). A High-Throughput Strategy for T-Cell Receptor Cloning and Expression. In: Huang, H., Davis, M.M. (eds) T-Cell Repertoire Characterization. Methods in Molecular Biology, vol 2574. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2712-9_12

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2712-9_12

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2711-2

  • Online ISBN: 978-1-0716-2712-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics