Abstract
DNA immobilized on a nylon membrane can be re-probed multiple times with different probes. Protocols typically recommend that DNA blots be stored either dry at room temperature or wet at 4 or −20°C after a probe is removed. This study shows substantial differences in the effect of these storage options on the performance of uncharged nylon membranes in subsequent hybridizations. Uncharged membranes, air-dried and stored at room temperature after probe removal, could not be successfully re-probed. However, excellent rehybridization results were obtained following probe removal when wet membranes were wrapped in plastic and stored at −20°C.
Similar content being viewed by others
Abbreviations
- BSA:
-
bovine serum albumen
- CTAB:
-
hexadecyltrimethylammonium bromide
- EDTA:
-
disodium ethylenediamine tetraacetate
- NaHPO4 :
-
sodium phosphate
- SDS:
-
sodium dodceyl
- SSC:
-
sodium citrate
References
Anderson MLM (1999) Nucleic Acid Hybridization, pp. 164. Springer-Verlag, New York.
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA and Struhl K (1994) Current Protocols in Molecular Biology, supplement 35, pp. 2.10.6–2.10.7. J. Wiley and Sons, Inc., New York.
Davis L, Kuehl M and Battey J (1994) Basic Methods in Molecular Biology, pp. 235–236. Appleton and Lange, Norwalk.
Giusti AM and Budowle B (1992) Effect of storage conditions on restriction fragment length polymorphism (RFLP) analysis of Deoxyribonucleic Acid (DNA) bound to positively charged nylon membranes. J Forens Sci 37 (2): 597–603.
Kaene B, Pelikan S, Toth GP, Smith MK and Rogstad SH (1999) Genetic diversity ofTypha latifolia (Typhaceae) and the impact of pollutants examined with tandem-repetitive DNA probes. Am J Bot 86(9): 1226–1238.
Rogstad SH (1993) Surveying plant genomes for variable number of tandem-repeat loci. Methods Enzymol 224: 278–294.
Rogstad SH (1996) Assessing genetic diversity in plants with synthetic tandem-repetitive DNA probes. In: Gustafson JP and Flavell RB (eds), Genomes of Plants and Animals, pp. 1–14. Plenum Press, New York.
Sambrook, J, Fritsch EF and Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd Edition, pp. 9.58. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
Tijssen P (1993) Hybridization With Nucleic Acid Probes, part II, pp. 415. Elsevier, Amsterdam, Netherlands.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Keane, B., Lim, H.W. & Rogstad, S.H. Re-probing DNA blots: Wet is better than dry storage of uncharged nylon membranes after removing probes. Plant Mol Biol Rep 18, 17–21 (2000). https://doi.org/10.1007/BF02825289
Published:
Issue Date:
DOI: https://doi.org/10.1007/BF02825289