Abstract
A sample of 158 Brazilian males from São Paulo (SP), Brazilian southeast, was typed for 17 Y-STR loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATA_H4.1, and DYS385ab). A total of 158 haplotypes were identified, of which all were unique. The haplotype diversity and discrimination capacity were calculated in 1.0 and the genetic diversity was 67.4%. Pairwise haplotype distances showed that the São Paulo population is not significantly different from Rio de Janeiro and Portugal, but is different from African and Native American.
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Nuñez C, Baeta M, Fernández M, Zarrabeitia M, Martinez-Jarreta B, de Pancorbo MM (2015) Highly discriminatory capacity of the PowerPlex® Y23 System for the study of isolated populations. Forensic Sci Int Genet 17:104–107. https://doi.org/10.1016/j.fsigen.2015.04.005
Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen JT, Pena SDJ (1996) Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet 97:309–313
Grattapaglia D, Kalupniek S, Guimarães CS, Ribeiro MA, Diener PS, Soares CN (2005) Y-chromosome STR haplotype diversity in Brazilian populations. Forensic Sci Int 149:99–107. https://doi.org/10.1016/j.forsciint.2004.06.003
Góis CC, Martins JA, Pereira GA, Freschi A, Paneto GG, Alvarenga VLS, Cicarelli RMB, Hirata MH, Oliveira RN (2008) Genetic population data of 12 STR loci of the PowerPlex®Y system in the state of São Paulo population (southeast of Brazil). Forensic Sci Int 174:81–86. https://doi.org/10.1016/j.forsciint.2006.12.018
Cardena MMSG, Mansur AJ, Pereira AC, Fridman C (2016) Y haplotype variability in a population of SÃO Paulo state, Brazil. Forensic Sci Int Genet 23:e22–e23. https://doi.org/10.1016/j.fsigen.2016.05.003
Nei M, Tajima F (1981) Genetic drift and estimation of effective population size. Genetics 98:625–640
IBGE (2010) Demograhphic sense of 2010. Brazilian Institute of Geography and Statistics. ftp://ftp.ibge.gov.br/Censos/Censo_Demografico_2010/Resultados_do_Universo/Resultados_preliminares_sobre_Rendimentos/Unidades_da_Federacao/sao_paulo.zip. Accessed 16 Feb 2017
Carvalho-Silva DR, Santos FR, Rocha J, Pena SD (2001) The phylogeography of Brazilian Y-chromosome lineages. Am J Hum Genet 68:281–286. https://doi.org/10.1086/316931
FUNAI. Indigenous people in Brazilian territory. National Indigenous Fundation. http://www.funai.gov.br/index.php/indios-no-brasil/terras-indigenas. Accessed 16 Feb 2017
Parson W, Roewer L (2010) Publication of population data of linearly inherited DNA markers in the International Journal of Legal Medicine. Int J Legal Med 124:505–509. https://doi.org/10.1007/s00414-010-0492-y
Poetsch M, Bajanowski T, Pfeiffer H (2012) The publication of population genetic data in the International Journal of Legal Medicine: guidelines. Int J Legal Med 126:489–490. https://doi.org/10.1007/s00414-012-0700-z
Acknowledgments
We thank Fundação do Desenvolvimento Administrativo (FUNDAP) for the scholarship (to L. F. S.) and to Jessica Grant for reviewing and support.
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Supplementary Figure 1
Number and origin of haplotypes evaluated for politic microregion of São Paulo state (GIF 131 kb)
Supplementary Figure 2
FST of 17-STR (a) and minimal haplotype (b) and RST of 17-STR (c) and minimal haplotype (d) (GIF 44 kb)
Supplementary Table S1
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Supplementary Table S2
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Supplementary Table S3
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Supplementary Table S5
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de Souza, L.F., da Motta, C.H.A.S. & Moura-Neto, R.S. 17 Y-STR haplotype diversity in São Paulo state (southeast of Brazil). Int J Legal Med 133, 81–83 (2019). https://doi.org/10.1007/s00414-018-1823-7
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DOI: https://doi.org/10.1007/s00414-018-1823-7