Abstract
The management of economically important lepidopteran pests has relied heavily on chemical and Bt-bio pesticides since 1940s, which has led to multiple recurring issues in resistance and environment. In this study, to search for a genetic-based control alternative with a distinctively different mode of action, we carried out a toxicological characterization of miR-34-5p, a highly conserved lepidopteran microRNA targeting EcR. Integrating target site prediction, co-localization of miRNA and EcR by fluorescence in situ hybridization, luciferase reporter assays as well as the gain-of-function and loss-of-function experiments, we comprehensively examined the physiological function and insecticidal properties of miR-34-5p among three representative lepidopteran pests, including Helicoverpa armigera, Spodoptera exigua, and Plutella xylostella. The combined results confirm a conserved role of miR-34-5p in the regulation of EcR in multiple lepidopteran pests. Overexpression or knocking down of miR-34-5p through both injection and feeding leads to insecticidal phenotypes, including high mortality, low fecundity, and developmental defects, suggesting that miRNAs can be considered as novel molecular targets in general, miR-34-5p for lepidopteran pests in particular. These results highlight the importance of miR-34-5p in the regulation of EcR expression in lepidopteran insects and provide a solid foundation for development of miRNA-based green pest control technology.
Similar content being viewed by others
Availability of data and material
The EcR sequence of Lepidoptera used in this study was downloaded from NCBI. All other information is provided within the manuscript.
Code availability
Not applicable.
References
Abbott WS (1925) A method of computing the effectiveness of an insecticide. J Econ Entomol 18:265–267. https://doi.org/10.1093/jee/18.2.265a
Ambros V (2011) MicroRNAs and developmental timing. Curr Opin Genet Dev 21(4):511–517. https://doi.org/10.1016/j.gde.2011.04.003
Asgari S (2013) MicroRNA functions in insects. Insect Biochem Mol Biol 43(4):388–397. https://doi.org/10.1016/j.ibmb.2012.10.005
Behura SK (2007) Insect microRNAs: Structure, function and evolution. Insect Biochem Mol Biol 37(1):3–9. https://doi.org/10.1016/j.ibmb.2006.10.006
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS (2004) MicroRNA targets in Drosophila. Genome Biol. https://doi.org/10.1186/gb-2003-5-1-r1
Flynt AS (2021) Insecticidal RNA interference, thinking beyond long dsRNA. Pest Manag Sci 77(5):2179–2187. https://doi.org/10.1002/ps.6147
Fullaondo A, Lee SY (2012) Identification of putative miRNA involved in Drosophila melanogaster immune response. Dev Comp Immunol 36(2):267–273. https://doi.org/10.1016/j.dci.2011.03.034
Ge X, Zhang Y, Jiang J, Zhong Y, Yang X, Li Z, Huang Y, Tan A (2013) Identification of microRNAs in Helicoverpa armigera and Spodoptera litura based on deep sequencing and homology analysis. Int J Biol Sci 9(1):1–15. https://doi.org/10.7150/ijbs.5249
He J, Chen Q, Wei Y, Jiang F, Yang M, Hao S, Guo X, Chen D, Kang L (2016) MicroRNA-276 promotes egg-hatching synchrony by up-regulating brm in locusts. Proc Natl Acad Sci U S A 113(3):584–589. https://doi.org/10.1073/pnas.1521098113
He K, Sun Y, Xiao H, Ge C, Li F, Han Z (2017) Multiple miRNAs jointly regulate the biosynthesis of ecdysteroid in the holometabolous insects, Chilo Suppressalis. RNA 23(12):1817–1833. https://doi.org/10.1261/rna.061408.117
He K, Xiao H, Sun Y, Ding S, Situ G, Li F (2019a) Transgenic microRNA-14 rice shows high resistance to rice stem borer. Plant Biotechnol J 17(2):461–471. https://doi.org/10.1111/pbi.12990
He K, Xiao H, Sun Y, Situ G, Xi Y, Li F (2019b) microRNA-14 as an efficient suppressor to switch off ecdysone production after ecdysis in insects. RNA Biol 16(9):1313–1325. https://doi.org/10.1080/15476286.2019.1629768
Huvenne H, Smagghe G (2010) Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: a review. J Insect Physiol 56(3):227–235. https://doi.org/10.1016/j.jinsphys.2009.10.004
Iwema T, Chaumot A, Studer RA, Robinson-Rechavi M, Billas IM, Moras D, Laudet V, Bonneton F (2009) Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects. Mol Biol Evol 26(4):753–768. https://doi.org/10.1093/molbev/msn302
Jayachandran B, Hussain M, Asgari S (2013) Regulation of Helicoverpa armigera ecdysone receptor by miR-14 and its potential link to baculovirus infection. J Invertebr Pathol 114(2):151–157. https://doi.org/10.1016/j.jip.2013.07.004
Jiang J, Ge X, Li Z, Wang Y, Song Q, Stanley DW, Tan A, Huang Y (2013) MicroRNA-281 regulates the expression of ecdysone receptor (EcR) isoform B in the silkworm, Bombyx Mori. Insect Biochem Mol Biol 43(8):692–700. https://doi.org/10.1016/j.ibmb.2013.05.002
Krol J, Loedige I, Filipowicz W (2010) The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 11(9):597–610. https://doi.org/10.1038/nrg2843
Kruger J, Rehmsmeier M (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34:W451-454. https://doi.org/10.1093/nar/gkl243
Leaman D, Chen PY, Fak J, Yalcin A, Pearce M, Unnerstall U, Marks DS, Sander C, Tuschl T, Gaul U (2005) Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development. Cell 121(7):1097–1108. https://doi.org/10.1016/j.cell.2005.04.016
Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S (2010) Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid. Acyrthosiphon Pisum BMC Genomics 11:281. https://doi.org/10.1186/1471-2164-11-281
Li H, Wei X, Ding T, Chu D (2018) Genome-Wide Profiling of Cardinium-Responsive MicroRNAs in the Exotic Whitefly, Bemisia tabaci (Gennadius) Biotype Q. Front Physiol 9:1580. https://doi.org/10.3389/fphys.2018.01580
Li XX, Ren X, Liu Y, Smagghe G, Liang P, Gao XW (2020) MiR-189942 regulates fufenozide susceptibility by modulating ecdysone receptor isoform B in Plutella xylostella (L.). Pestic Biochem Physiol 163:235–240. https://doi.org/10.1016/j.pestbp.2019.11.021
Li R, Zhu B, Shan J, Li L, Liang P, Gao XW (2021) Functional analysis of a carboxylesterase gene involved in beta-cypermethrin and phoxim resistance in Plutella xylostella (L.). Pest Manag Sci 77(4):2097–2105. https://doi.org/10.1002/ps.6238
Liang P, Feng B, Zhou X, Gao XW (2013) Identification and developmental profiling of microRNAs in diamondback moth, Plutella xylostella (L.). PLoS ONE 8(11):e78787. https://doi.org/10.1371/journal.pone.0078787
Ling L, Kokoza VA, Zhang C, Aksoy E, Raikhel AS (2017) MicroRNA-277 targets insulin-like peptides 7 and 8 to control lipid metabolism and reproduction in Aedes aegypti mosquitoes. Proc Natl Acad Sci U S A 114(38):E8017–E8024. https://doi.org/10.1073/pnas.1710970114
Liu Z, Ling L, Xu J, Zeng B, Huang Y, Shang P, Tan A (2018) MicroRNA-14 regulates larval development time in Bombyx mori. Insect Biochem Mol Biol 93:57–65. https://doi.org/10.1016/j.ibmb.2017.12.009
Liu Z, Xu J, Ling L, Luo X, Yang D, Yang X, Zhang X, Huang Y (2020) miR-34 regulates larval growth and wing morphogenesis by directly modulating ecdysone signalling and cuticle protein in Bombyx mori. RNA Biol 17(9):1342–1351. https://doi.org/10.1080/15476286.2020.1767953
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT Method. Methods 25(4):402–408. https://doi.org/10.1006/meth.2001.1262
Lomate PR, Mahajan NS, Kale SM, Gupta VS, Giri AP (2014) Identification and expression profiling of Helicoverpa armigera microRNAs and their possible role in the regulation of digestive protease genes. Insect Biochem Mol Biol 54:129–137. https://doi.org/10.1016/j.ibmb.2014.09.008
Lucas K, Raikhel AS (2013) Insect microRNAs: biogenesis, expression profiling and biological functions. Insect Biochem Mol Biol 43(1):24–38. https://doi.org/10.1016/j.ibmb.2012.10.009
Ma KS, Li F, Liu Y, Liang PZ, Chen XW, Gao XW (2017) Identification of microRNAs and their response to the stress of plant allelochemicals in Aphis gossypii (Hemiptera: Aphididae). BMC Mol Biol 18(1):5. https://doi.org/10.1186/s12867-017-0080-5
Orom UA, Nielsen FC, Lund AH (2008) MicroRNA-10a binds the 5’UTR of ribosomal protein mRNAs and enhances their translation. Mol Cell 30(4):460–471. https://doi.org/10.1016/j.molcel.2008.05.001
Richardson EB, Troczka BJ, Gutbrod O, Davies TGE, Nauen R (2020) Diamide resistance: 10 years of lessons from lepidopteran pests. J Pest Sci 93(3):911–928. https://doi.org/10.1007/s10340-020-01220-y
Shang F, Niu J, Ding BY, Zhang W, Wei DD, Wei D, Jiang HB, Wang JJ (2020) The miR-9b microRNA mediates dimorphism and development of wing in aphids. Proc Natl Acad Sci U S A 117(15):8404–8409. https://doi.org/10.1073/pnas.1919204117
Shen ZJ, Liu YJ, Zhu F, Cai LM, Liu XM, Tian ZQ, Cheng J, Li Z, Liu XX (2020) MicroRNA-277 regulates dopa decarboxylase to control larval-pupal and pupal-adult metamorphosis of Helicoverpa armigera. Insect Biochem Mol Biol 122:103391. https://doi.org/10.1016/j.ibmb.2020.103391
Silver K, Cooper AM, Zhu KY (2021) Strategies for enhancing the efficiency of RNA interference in insects. Pest Manag Sci 77(6):2645–2658. https://doi.org/10.1002/ps.6277
Song J, Li W, Zhao H, Gao L, Fan Y, Zhou S (2018) The microRNAs let-7 and miR-278 regulate insect metamorphosis and oogenesis by targeting the juvenile hormone early-response gene Kruppel-homolog 1. Development. https://doi.org/10.1242/dev.170670
Tay Y, Zhang J, Thomson AM, Lim B, Rigoutsos I (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455(7216):1124–1128. https://doi.org/10.1038/nature07299
Wu P, Jiang X, Guo X, Li L, Chen T (2016) Genome-wide analysis of differentially expressed microRNA in Bombyx mori Infected with Nucleopolyhedrosis Virus. PLoS ONE 11(11):e0165865. https://doi.org/10.1371/journal.pone.0165865
Wu F, Luo J, Chen Z, Ren Q, Xiao R, Liu W, Hao J, Liu X, Guo J, Qu Z, Wu Z, Wang H, Luo J, Yin H, Liu G (2019) MicroRNA let-7 regulates the expression of ecdysteroid receptor (ECR) in Hyalomma asiaticum (Acari: Ixodidae) ticks. Parasit Vectors 12(1):235. https://doi.org/10.1186/s13071-019-3488-6
Yan S, Qian J, Cai C, Ma Z, Li J, Yin M, Ren B, Shen J (2019) Spray method application of transdermal dsRNA delivery system for efficient gene silencing and pest control on soybean aphid Aphis glycines. J Pest Sci 93(1):449–459. https://doi.org/10.1007/s10340-019-01157-x
Yang M, Wang Y, Jiang F, Song T, Wang H, Liu Q, Zhang J, Zhang J, Kang L (2016) miR-71 and miR-263 jointly regulate target genes chitin synthase and chitinase to control locust molting. PLoS Genet 12(8):e1006257. https://doi.org/10.1371/journal.pgen.1006257
Zhang J, Khan SA, Hasse C, Ruf S, Heckel DG, Bock R (2015) Full crop protection from an insect pest by expression of long double-stranded RNAs in plastids. Science 347(6225):991–994. https://doi.org/10.1126/science.1261680
Zhang YH, Ma ZZ, Zhou H, Chao ZJ, Yan S, Shen J (2021) Nanocarrier-delivered dsRNA suppresses wing development of green peach aphids. Insect Sci. https://doi.org/10.1111/1744-7917.12953
Zheng Y, Hu Y, Yan S, Zhou H, Song D, Yin M, Shen J (2019) A polymer/detergent formulation improves dsRNA penetration through the body wall and RNAi-induced mortality in the soybean aphid Aphis glycines. Pest Manag Sci 75(7):1993–1999. https://doi.org/10.1002/ps.5313
Zhou M, Jia X, Wan H, Wang S, Zhang X, Zhang Z, Wang Y (2019) miR-34 regulates reproduction by inhibiting the expression of MIH, CHH, EcR, and FAMeT genes in mud crab Scylla paramamosain. Mol Reprod Dev 86(2):122–131. https://doi.org/10.1002/mrd.23063
Zhu B, Li X, Liu Y, Gao XW, Liang P (2017) Global identification of microRNAs associated with chlorantraniliprole resistance in diamondback moth Plutella xylostella (L.). Sci Rep 7:40713. https://doi.org/10.1038/srep40713
Zhu B, Sun X, Nie X, Liang P, Gao XW (2020) MicroRNA-998-3p contributes to Cry1Ac-resistance by targeting ABCC2 in lepidopteran insects. Insect Biochem Mol Biol 117:103283. https://doi.org/10.1016/j.ibmb.2019.103283
Zuo Y, Shi Y, Zhang F, Guan F, Zhang J, Feyereisen R, Fabrick JA, Yang Y, Wu Y (2021) Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm. PLoS Genet 17(7):e1009680. https://doi.org/10.1371/journal.pgen.1009680
Acknowledgements
We would like to thank professor Xuguo “Joe” Zhou (Department of Entomology, University of Kentucky) for constructive comments on the manuscript, and thank the support of the National Natural Science Foundation (31572023, 31772186, 32172440), National Science & Technology Fundamental Resources Investigation Program of China (2018FY10100), and Chinese Universities Scientific Fund (Grant No. 2021TC103).
Funding
This work was supported by the National Natural Science Foundation of China (31572023, 31772186, 32172440), National Science & Technology Fundamental Resources Investigation Program of China (2018FY10100) and Chinese Universities Scientific Fund (Grant No. 2021TC103).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethical approval
This research did not involve humans or vertebrates.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Li, L., Zhu, B., Sun, X. et al. miR-34-5p, a novel molecular target against lepidopteran pests. J Pest Sci 96, 209–224 (2023). https://doi.org/10.1007/s10340-022-01488-2
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10340-022-01488-2