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The role of homegardens and forest ecosystems for domestication and conservation of Ziziphus spina-christi (L.) Willd. in the Nuba Mountains, Sudan

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Abstract

Iterative domestication processes by humans such as selection, translocation and cultivation are known to affect the morphological and genetic diversity of tree species. Since many of these species occur also in human-created homegardens (HG) this type of agroecosystem therefore represents an ideal setting to study such domestication processes. The threatened indigenous fruit tree Ziziphus spina-christi occurs in HGs and forests of the Nuba Mountains, Sudan, and was therefore selected as a model species. Five locations were sampled and the geographical position of 250 trees determined. Each location was subdivided into HG and forest sites. The diversities of morphological traits and amplified fragment length polymorphisms were assessed to study variation within and among locations and sites. Diversity of dendrometric parameters and fruit morphometries was high and differed significantly among locations. Environmental parameters affected dendrometry and fruit size, but applied regression models were of low explanatory power. Although statistically not significant, mean fruit measures were continuously larger in HGs than in forests. Higher genetic diversity was observed in HG samples. Larger dendrometric and fruit morphometric traits are likely to result from better growing conditions in HGs and/or human selection of germplasm. This is in line with the higher genetic diversity in HGs which may be a consequence of the admixture of germplasm from different origins planted in HGs. Z. spina-christi underwent incipient steps of domestication. High genetic diversity in HGs suggests those as valuable spots of improved germplasm and for on-farm conservation purposes.

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References

  • Abasse T, Weber JC, Katkore B, Boureima M, Larwanou M, Kalinganire A (2011) Morphological variation in Balanites aegyptiaca fruits and seeds within and among parkland agroforests in eastern Niger. Agroforest Syst 81(1):57–66

    Article  Google Scholar 

  • Abdelkheir RM, Hamza NB, Khalil AM, Warrag EI (2011) Genetic variation within and among five natural populations of endangered Sclerocarya birrea (A. Rich) subsp. birrea in Sudan. Afr J Biotechnol 10(28):5452–5460

    CAS  Google Scholar 

  • Adam YO, Pretzsch J (2010) Contribution of local trade in Ziziphus spina-christi L. fruits to rural houshold’s economy in Rashad locality, Sudan. Forestry Ideas 16(39):19–27

    Google Scholar 

  • Akinnifesi FK, Ajayi OC, Sileshi G, Kadzere I, Akinnifesi AI (2007) Domesticating and commercializing indigenous fruit and nut tree crops for food security and income generation in Sub-Saharan Africa. New Crops International Symposium, Southampton

    Google Scholar 

  • Allendorf FW, Luikart G (2007) Conservation and the genetics of populations. Carlton, Australia, Blackwell Publishing, Malden

    Google Scholar 

  • Anegbeh PO, Ukafor V, Usoro C, Tchoundjeu Z, Leakey RRB, Schreckenberg K (2005) Domestication of Dacryodes edulis: 1. Phenotypic variation of fruit traits from 100 trees in southeast Nigeria. New Forest 29:149–160

    Article  Google Scholar 

  • Anonymous (1989) Flora of Ethiopia. Addis Ababa and Asmara, Ethiopia, Uppsala, Sweden, The National Herbarium, Biology Department, Science Faculty, Addis Ababa University and The Department of Systematic Botany, Uppsala

  • Aradhya MK, Stover E, Velasco D, Koehmstedt A (2010) Genetic structure and differentiation in cultivated fig (Ficus carica L.). Genetica 138:681–694

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Asfaw Z, Agren GI (2007) Farmers’ local knowledge and topsoil properties of agroforestry practices in Sidama, Southern Ethiopia. Agroforest Syst 71(1):35–48

    Article  Google Scholar 

  • Assogbadjo AE, Kyndt T, Sinsin B, Gheysen G, Van Damme P (2006) Patterns of genetic and morphometric diversity in baobab (Adansonia digitata) populations across different climatic zones of Benin (West Africa). Ann Bot 97(5):819–830

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Atangana AR, Ukafor V, Anegbeh P, Asaah E, Tchoundjeu Z, Fondoun JM, Ndoumbe M, Leakey RRB (2002) Domestication of Irvingia gabonensis: 2. The selection of multiple traits for potential cultivars from Cameroon and Nigeria. Agroforest Syst 55(3):221–229

    Article  Google Scholar 

  • Ayelea TB, Gailing O, Finkeldey R (2011) Assessment and integration of genetic, morphological and demographic variation in Hagenia abyssinica (Bruce) J.F. Gmel. to guide its conservation. J Nat Conserv 19:8–17

    Article  Google Scholar 

  • Bashalkhanov S, Pandey M, Rajora OP (2009) A simple method for estimating genetic diversity in large populations from finite sample sizes. BMC Genet 10:84

    Article  PubMed Central  PubMed  Google Scholar 

  • Brodie AW, Labarta-Chávarri RA, Weber JC (1997) Tree germplasm management and use on-farm in the Peruvian Amazon: a case study from the Ucayali Region, Peru. Development Institute, London, United Kingdom and International Centre for Research in Agroforestry, Nairobi

    Google Scholar 

  • Cornelius JP, Weber JC, Sotelo-Montes C, Ugarte-Guerra LJ (2010) Phenotypic correlations and site effects in a Peruvian landrace of peach palm (Bactris gasipaes Kunth). Euphytica 173(2):173–183

    Article  Google Scholar 

  • Dawson I, Jamnadass R (2008) Molecular markers for tropical trees—a practical guide to principles and procedures. Nairobi, World Agroforestry Centre

    Google Scholar 

  • Dawson IK, Hollingsworth PM, Doyle JJ, Kresovich S, Weber JC, Montes CS, Pennington TD, Pennington RT (2008) Origins and genetic conservation of tropical trees in agroforestry systems: a case study from the Peruvian Amazon. Conserv Genet 9:361–372

    Article  Google Scholar 

  • De Smedt S, Alaerts K, Kouyate AM, Van Damme P, Potters G, Samson R (2011) Phenotypic variation of baobab (Adansonia digitata L.) fruit traits in Mali. Agroforest Syst 82(1):87–97

    Article  Google Scholar 

  • Doebley JF, Gaut BS, Smith BD (2006) The molecular genetics of crop domestication. Cell 127(7):1309–1321

    Article  CAS  PubMed  Google Scholar 

  • Duvall CS (2007) Human settlement and baobab distribution in south-western Mali. J Biogeogr 34(11):1947–1961

    Article  Google Scholar 

  • Earl DA, von Holdt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet 4:359–361

    Article  Google Scholar 

  • Ekué MRM, Gailing O, Vornam B, Finkeldey R (2011) Assessment of the domestication state of ackee (Blighia sapida K.D. Koenig) in Benin based on AFLP and microsatellite markers. Conserv Genet 12:475–489

    Article  Google Scholar 

  • El Tahir BA, Fadl KEM, Fadlalmula AGD (2010) Forest biodiversity in Kordofan region, Sudan: effects of climate change, pests, disease and human activities. Biodiversity 11(3 & 4):34–44

    Article  Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14(8):2611–2620

    Article  CAS  PubMed  Google Scholar 

  • Excoffier LGL, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50

    CAS  PubMed Central  Google Scholar 

  • Eyzaguirre PB (2001) People and plant genetic resources. In: GJ Martin, S Barrow, PB Eyzaguirre (eds) People and plants handbook—sources for applying ethnobotany to conservation and community development. Kew, WWF, UNESCO, RBG. 7

  • Ezeldeen M, Osman AR (1997) Non-wood goods and services: Sudan, FAO. From www.fao.org/docrep/008/ae429e/ae429e00.htm. Accessed 21 Dec 2012

  • Farwig N, Braun C, Boehning-Gaese K (2008) Human disturbance reduces genetic diversity of an endangered tropical tree, Prunus africana (Rosaceae). Conserv Genet 9(2):317–326

    Article  Google Scholar 

  • Ferguson H (1954) The food crops of the Sudan and their relation to environment. Philosophical Society of the Sudan. Khartoum: 56

  • Gebauer J (2005) Plant species diversity of home gardens in El Obeid, Central Sudan. J Agr Rural Dev Trop 106(2):97–103

    Google Scholar 

  • Gilmour JS, Gregor JW, Dast N (1939) Demes: a suggested terminology. Nature 144:333

    Article  Google Scholar 

  • Goenster S, Wiehle M, Kehlenbeck K, Jamnadass R, Gebauer J, Buerkert A (2011) Indigenous fruit trees in homegardens of the Nuba Mountains, Central Sudan: tree diversity and potential for improving the nutrition and income of rural communities. First All African Horticultural Congress. ISHS Acta Horticulturae 911:355–364

  • Grice AC (1996) Seed production, dispersal and germination in Cryptostegia grandiflora and Ziziphus mauritiana, two invasive shrubs in tropical woodlands of northern Australia. Aust J Ecol 21(3):324–331

    Article  Google Scholar 

  • Hamrick JL, Godt MJW (1997) Allozyme diversity in cultivated crops. Crop Sci 37(1):26–30

    Article  CAS  Google Scholar 

  • Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New Forest 6(1–4):95–124

    Article  Google Scholar 

  • Haudry A, Cenci A, Ravel C, Bataillon T, Brunel D, Poncet C, Hochu I, Poirier S, Santoni S, Glemin S, David J (2007) Grinding up wheat: a massive loss of nucleotide diversity since domestication. Mol Biol Evol 24:1506–1517

    Article  CAS  PubMed  Google Scholar 

  • HCENR (2000) First national report on the implementation of the convention on biological diversity, Khartoum, Sudan, The Higher Council for Environment and National Resources (HCENR), from www.cbd.int/doc/world/sd/sd-nr-01-en.pdf. Accessed 21 June 2012

  • Holdo RM (2006) Tree growth in an African woodland savanna affected by disturbance. J Veg Sci 17(3):369–378

    Article  Google Scholar 

  • Hollingsworth PM, Dawson IK, Goodall-Copestake WP, Richardson JE, Weber JC, Montes CS, Pennington RT (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14(2):497–501

    Article  CAS  PubMed  Google Scholar 

  • Hughes CE (1998) Leucaena: a genetic resources handbook. England, Forestry Institute, University of Oxford, Oxford

    Google Scholar 

  • Hyten DL, Song QJ, Zhu YL, Choi IY, Nelson RL, Costa JM, Specht JE, Shoemaker RC, Cregan PB (2006) Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci USA 103(45):16666–16671

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Ismail IM, Elsheikh EA (2007) The woody vegetation of Rashad District, South Kordofan-Sudan (Eastern Nuba Mountains). Sudan Silva 13(1):78–88

    Google Scholar 

  • Jama BA, Mohamed AM, Mulatya J, Njui AN (2008) Comparing the “Big Five”: a framework for the sustainable management of indigenous fruit trees in the drylands of East and Central Africa. Ecol Indic 8(2):170–179

    Article  Google Scholar 

  • Kramer H, Akca A (2002) Leitfaden zur Waldmesslehre. Sauerländer Verlag, Frankfurt am Main

    Google Scholar 

  • Kumar BM (2008) Homegarden-based indigenous fruit tree production in Peninsular India. In: FK Akinnifesi, RRB Leakey, OC Ajayi, G Sileshi, Z Tchoundjeu, P Matakala, FR Kwesiga (eds) Indigenous fruit trees in the tropics—domestication, utilization and commercialization. CABI, pp 84–99

  • Leakey R (2005) Domestication potential of Marula (Sclerocarya birrea subsp. caffra) in South Africa and Namibia: 3. multiple trait selection. Agroforest Syst 64(1):51–59

    Article  Google Scholar 

  • Leakey RRB, Tchoundjeu Z, Smith RI, Munro RC, Fondoun JM, Kengue J, Anegbeh PO, Atangana AR, Waruhiu AN, Asaah E, Usoro C, Ukafor V (2004) Evidence that subsistence farmers have domesticated indigenous fruits (Dacryodes edulis and Irvingia gabonensis) in Cameroon and Nigeria. Agroforest Syst 60(2):101–111

    Article  Google Scholar 

  • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220

    CAS  PubMed  Google Scholar 

  • Maranz S, Wiesmann Z (2003) Evidence for indigenous selection and distribution of the shea tree, Vitellaria paradoxa, and its potential significance to prevailing parkland savanna tree patterns in sub-Saharan Africa north of the equator. J Biogeogr 30:1505–1516

    Article  Google Scholar 

  • Miehe S (1986) Acacia albida and other multipurpose trees on the fur farmlands in the Jebbel Marra highlands, western Darfur, Sudan. Agroforest Syst 4:89–119

    Article  Google Scholar 

  • Miller AJ, Schaal BA (2006) Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Mol Ecol 15:1467–1480

    Article  CAS  PubMed  Google Scholar 

  • Muneer SET (2008) Factors affecting adoption of agroforestry farming system as a mean for sustainable agricultural development and environment conservation in arid areas of Northern Kordofan state, Sudan. Saudi J Biol Sci 15(1):137–145

  • Mutegi E, Sagnard F, Labuschagne M, Herselman L, Semagn K, Deu M, de Villiers S, Kanyenji BM, Mwongera CN, Traore PCS, Kiambi D (2012) Local scale patterns of gene flow and genetic diversity in a crop–wild–weedy complex of sorghum (Sorghum bicolor (L.) Moench) under traditional agricultural field conditions in Kenya. Conserv Genet 13:1059–1071

    Article  Google Scholar 

  • Mwase WF, Akinnifesi FK, Stedje B, Kwapata MB, Bjørnstad Å (2010) Genetic diversity within and among southern African provenances of Uapaca kirkiana Muell. Årg using morphological and AFLP markers. New Forest 40:383–399

  • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321–3323

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • O’Brien RM (2007) A caution regarding rules of thumb for variance inflation factors. Qual Quant 41(5):673–690

    Article  Google Scholar 

  • Orwa C, Mutua A, Kindt R, Jamnadass R, Anthony S (2009) Agroforestree Database: a tree reference and selection guide version 4.0, World Agroforestry Centre, Kenya, from www.worldagroforestry.org/resources/databases/agroforestree. Accessed 21 June 2012

  • Parker IM, Lopez I, Petersen JJ, Anaya N, Cubilla-Rios L, Potter D (2010) Domestication syndrome in Caimito (Chrysophyllum cainito L.): fruit and seed characteristics. Econ Bot 64(2):161–175

    Article  PubMed Central  PubMed  Google Scholar 

  • Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6(1):288–295

    Article  Google Scholar 

  • Petit RJ (2007) AFLPdiv. INRA, Bordeaux

    Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    CAS  PubMed Central  PubMed  Google Scholar 

  • Robinson J (2006) Useful wild tree resources. Plant Genetic Resour 4(3):188–197

    Article  Google Scholar 

  • Saied AS, Gebauer J, Hammer K, Buerkert A (2008) Ziziphus spina-christi (L.) Willd.: a multipurpose fruit tree. Genet Resour Crop Evol 55(7):929–937

    Article  Google Scholar 

  • Sawadogo L, Tiveau D, Nygard R (2005) Influence of selective tree cutting, livestock and prescribed fire on herbaceous biomass in the savannah woodlands of Burkina Faso, West Africa. Agr Ecosyst Environ 105(1–2):335–345

    Article  Google Scholar 

  • Simons AJ, Leakey RRB (2004) Tree domestication in tropical agroforestry. Agroforest Syst 61(1–3):167–181

    Google Scholar 

  • Singh AK, Sharma RK, Singh NK, Bansal KC, Koundal KR, Mohapatra T (2006) Genetic diversity in ber (Ziziphus spp.) revealed by AFLP markers. J Hortic Sci Biotech 81(2):205–210

    CAS  Google Scholar 

  • Sotello Montes C, Weber JC (2009) Genetic variation in wood density and correlations with tree growth in Prosopis africana from Burkina Faso and Niger. Ann For Sci 66(713):1–6

  • Stefenon VM, Gailing O, Finkeldey R (2008) Genetic structure of plantations and the conservation of genetic resources of Brazilian pine (Araucaria angustifolia). Forest Ecol Manag 255:2718–2725

    Article  Google Scholar 

  • Sudhersan C, Hussain J (2003) In vitro clonal propagation of a multipurpose tree, Ziziphus spina-christi (L.) Desf. Turk J Bot 27:167–171

    Google Scholar 

  • Tchoundjeu Z, Asaah EK, Anegbeh P, Degrande A, Mbile P, Facheux C, Tsobeng A, Atangana AR, Ngo-Mpeck ML, Simons AJ (2006) Putting participatory domestication into practice in West and Central Africa. For Trees Livelihoods 16:53–69

  • Trinh LN, Watson JW, Hue NN, De NN, Minh NV, Chu P, Sthapit BR, Eyzaguirre PB (2003) Agrobiodiversity conservation and development in Vietnamese home gardens. Agr Ecosyst Environ 97(1–3):317–344

    Article  Google Scholar 

  • USDA (2012) United States soil taxonomy. From www.soils.usda.gov/technical/classification/taxonomy/. Accessed 17 Dec 2012

  • Varela RO, Bucher EH (2002) The lizard Teius teyou (Squamata: Teiidae) as a legitimate seed disperser in the dry Chaco Forest of Argentina. Stud Neotrop Fauna E 37(2):115–117

    Article  Google Scholar 

  • Varela O, Bucher EH (2006) Passage time, viability, and germination of seeds ingested by foxes. J Arid Environ 67(4):566–578

    Article  Google Scholar 

  • Vekemans X (2002) AFLP-SURV version 1.0. Université Libre de Bruxelles, Belgium, Laboratoire de Génétique et Ecologie Végétale

  • Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP—a new technique for DNA-fingerprinting. Nucleic Acids Res 23(21):4407–4414

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Weinberger K, Lumpkin T (2005) Horticulture for poverty alleviation: the unfunded revolution. AVRDC-The World Vegetable Center, Shanhua

    Google Scholar 

  • Wright S (1978) Evolution and the genetics of population, variability within and among natural populations. The University of Chicago Press, Chicago

    Google Scholar 

  • Zhang SY, Wang LX (1995) Fruit consumption and seed dispersal of Ziziphus cinnamomum (Rhamnaceae) by two sympatric primates (Cebus apella and Ateles paniscus) in French Guiana. Biotropica 27(3):397–401

    Article  Google Scholar 

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Acknowledgments

We thank the Deutsche Forschungsgemeinschaft for funding this study as part of the project “Effects of transformation processes in “jubraka” agroforestry systems of the Nuba Mountains, Sudan, on plant diversity and nutrient fluxes”, BU 1308/9-1 & GE 2094/1-1. We are grateful to the field assistants and the following village hosts: Adam Tutu, Dr. Jaranabil and Osman Silmi from Habila, Sabri Abdul Karim and NRRDO from Kauda, Omar Balandia, Achmed Al Zet, Ibrahim Al Zet, Jussuf Al Sheikh, Mohammed Defallah, Mubarak Defallah and Adam Moza from Kalogi, Moza Suleiman from Sama, Al Sheikh Jussuf and Khalid Jussuf from Rashad. Many thanks to all the families that invited us into their homegardens and participated in interviews. We also express our thanks to the local authorities (chiefs and intelligence services) of the respective villages and areas for their kind cooperation and issuing of the necessary working permits. A special thanks goes to Alexandra Dolynska for her laboratory assistance and supporting information as well as to Prof. Dr. Reiner Finkeldey and his working group (Forest Genetics and Forest Tree Breeding Institute) at Georg-August-Universität Göttingen, Germany. Finally we are indebted to William Nelson for assisting with the morphometric fruit measurements.

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Wiehle, M., Prinz, K., Kehlenbeck, K. et al. The role of homegardens and forest ecosystems for domestication and conservation of Ziziphus spina-christi (L.) Willd. in the Nuba Mountains, Sudan. Genet Resour Crop Evol 61, 1491–1506 (2014). https://doi.org/10.1007/s10722-014-0124-3

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