Abstract
A quantitative analysis of 2D 1H-15N spectra is often complicated by resonance overlap. Here a simple method is presented for resolving overlapped correlations by recording 2D projection planes from HNCO data sets. Applications are presented involving the measurement of 15N T1ρ relaxation rates in a high molecular weight protein, malate synthase G, and in a system that exchanges between folded and unfolded states, the drkN SH3 domain. By supplementing relaxation data recorded in the conventional way as a series of 2D 1H-15N data sets with a series of a pair of projection planes the number of dynamics probes is increased significantly for both systems studied.
Similar content being viewed by others
References
Boyd, J. and Soffe, N. (1989) J. Magn. Reson., 85, 406–413.
Caffrey, M., Kaufman, J., Stahl, S.J., Wingfield, P.T., Gronenborn, A.M. and Clore, G.M. (1998) J. Magn. Reson., 135, 368–372.
Coggins, B.E., Venters, R.A. and Zhou, P. (2004) J. Am. Chem. Soc., 126, 1000–1001.
Griesinger, C. and Ernst, R.R. (1987) J. Magn. Reson., 75, 261–271.
Grzesiek, S. and Bax, A. (1993) J. Biomol. NMR, 3, 185–204.
Gutmanas, A., Tu, L., Yu, V., Orekhov, V.Y. and Billeter, M. (2004) J. Magn. Reson. 167, 107–113.
Howard, B.R., Endrizzi, J.A. and Remington, S.J. (2000) Biochemistry, 39, 3156–3168.
Kamith, U. and Shriver, J.W. (1989) J. Biol. Chem., 264, 5586–5592.
Kay, L.E., Ikura, M., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 89, 496–514.
Kay, L.E., Keifer, P. and Saarinen, T. (1992a) J. Am. Chem. Soc., 114, 10663–10665.
Kay, L.E., Nicholson, L.K., Delaglio, F., Bax, A. and Torchia, D.A. (1992b) J. Magn. Reson., 97, 359–375.
Kim, S. and Szyperski, T. (2003) J. Am. Chem. Soc., 125, 1385–1393.
Kim, S. and Szyperski, T. (2004) J. Biomol. NMR., 28, 117–130.
Kupče, E. and Freeman, R. (2003a) J. Biomol. NMR, 27, 101–113.
Kupče, E. and Freeman, R. (2003b) J. Am. Chem. Soc., 125, 13958–13959.
Kupče, E. and Freeman, R. (2003c) J. Biomol. NMR, 27, 383–387.
Kupče, E. and Freeman, R. (2004a) J. Am. Chem. Soc., 126, 6429–6440.
Kupče, E. and Freeman, R. (2004b) J. Biomol. NMR, 28, 391–395.
Logan, T.M., Olejniczak, E.T., Xu, R.X. and Fesik, S.W. (1993) J. Biomol. NMR, 3, 225–231.
McCoy, M.A. (1998) J. Magn. Reson., 130, 341–345.
Palmer, A.G., Skelton, N.J., Chazin, W.J., Wright, P.E. and Rance, M. (1992) Mol. Phys., 75, 699–711.
Patt, S.L. (1992) J. Magn. Reson., 96, 94–102.
Peng, J.W. and Wagner, G. (1992) J. Magn. Reson., 98, 308–332.
Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1997) Proc. Natl. Acad. Sci. USA, 94, 12366–12371.
Schleucher, J., Sattler, M. and Griesinger, C. (1993) Angew. Chem. Int. Ed. Engl., 32, 1489–1491.
Tugarinov, V. and Kay, L.E. (2003) J. Mol. Biol., 327, 1121–1133.
Tugarinov, V., Muhandiram, R., Ayed, A. and Kay, L.E. (2002) J. Am. Chem. Soc., 124, 10025–10035.
Vuister, G.W. and Bax, A. (1992) J Magn. Reson., 98, 428–435.
Yamazaki, T., Muhandiram, R. and Kay, L.E. (1994) J. Am. Chem. Soc., 116, 8266–8278.
Yang, D. and Kay, L.E. (1999) J. Biomol. NMR, 13, 3–10.
Zhang, O. and Forman-Kay, J.D. (1995) Biochemistry, 34, 6784–6794.
Zhang, O., Forman-Kay, J.D., Shortle, D. and Kay, L.E. (1997) J. Biomol. NMR, 9, 181–200.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Tugarinov, V., Choy, WY., Kupče, E. et al. Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: Application to 15N relaxation measurements. J Biomol NMR 30, 347–352 (2004). https://doi.org/10.1007/s10858-005-1549-y
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/s10858-005-1549-y