Abstract
Arabinogalactan (AG) and sulphated arabinogalactans which are products of chemical modification of arabinogalactan polysaccharide with anticoagulant properties were studied by experimental infrared (IR) spectroscopy combined with density functional theory simulations. Mutual analysis of experimental and theoretical IR frequencies indicates that the discrepancies between experiment and theory is caused by the influence of –OH groups, which led to the energy shift and broadening of the absorption IR bands. It was found that theoretical and experimental spectra correspond well within the 3000–4000 cm−1 spectral region. Addition of sulphur group in AG structure causes hydroxyl group to become accessible for further sulphation. The difference between experimental and theoretical IR frequencies of sulphated AG derivatives is greater than that of the parent arabinogalactan due to the increase in the number of possible isomers and conformers.
Similar content being viewed by others
References
Akman F (2016) Spectroscopic investigation, HOMO–LUMO energies, natural bond orbital (NBO) analysis and thermodynamic properties of two-armed macroinitiator containing coumarin with DFT quantum chemical calculations. Can J Phys 94(6):583–593. https://doi.org/10.1139/cjp-2016-0041
Akman F, Kazachenko AS, Vasilyeva NYu, Malyar YuN (2020) Synthesis and characterization of starch sulfates obtained by the sulfamic acid-urea complex. J Mol Struct. https://doi.org/10.1016/j.molstruc.2020.127899
Akman F (2017) Coumarin-based random copolymer. J Therm Comp Mater 31(6):729–744. https://doi.org/10.1177/0892705717720253
Alban S, Schauerte A, Franz G (2002) Anticoagulant sulfated polysaccharides: part I. synthesis and structure-activity relationships of new pullulan sulfates. Carbohydr Polym 47(3):267–276. https://doi.org/10.1016/S0144-8617(01)00178-3
Antonova GF, Usov AI (1984) The structure of arabinogalactan of Siberian larch wood (Larix sibirica Ledeb.). Russ J Bioorg Chem 10(12):1664–1669
Babkin VA, Neverova NA, Medvedeva EN, Fedorova TE, Levchuk AA (2016) Investigation of physicochemical properties of arabinogalactan of different larch species. Russ J Bioorg Chem 42(7):23. https://doi.org/10.1134/S1068162016070025
Barsberg S (2010) Prediction of vibrational spectra of polysaccharides—simulated IR spectrum of cellulose based on density functional theory. J Phys Chem B 114:11703–11708. https://doi.org/10.1021/jp104213z
Becker CF, Guimarães JA, Mourão PAS, Verli H (2007) Conformation of sulfated galactan and sulfated fucan in aqueous solutions: implications to their anticoagulant activities. J Mol Graphics and Modelling 26(1):391–399. https://doi.org/10.1016/j.jmgm.2007.01.008
Canales A, Boos I, Perkams L, Karst L, Luber T, Karagiannis T, Jiménez-Barbero J (2017) Breaking the limits in analyzing carbohydrate recognition by NMR spectroscopy: resolving branch-selective interaction of a tetra-antennary n-glycan with lectins. Angew Chem Int Ed 56(47):14987–14991. https://doi.org/10.1002/anie.201709130
Chaidedgumjorn A, Toyoda H, Woo ER, Lee KB, Kim YS, Toida T, Imanari T (2002) Effect of (1–3)-and (1–4)-linkages of fully sulfated polysaccharides on their anticoagulant activity. Carbohyd Res 337(10):925–933
Curtiss LA, Raghavachari K, Redfern PC, Pople JA (1997) Assessment of Gaussian-2 and density functional theories for the computation of enthalpies of formation. J Chem Phys 106(3):1063–1068. https://doi.org/10.1063/1.473182
Curtiss LA, Redfern PC, Raghavachari K (2005) Assessment of Gaussian-3 and test set of experimental energies. J Chem Phys 123:124107–124119. https://doi.org/10.1063/1.2039080
Desai UR (2004) New antithrombin-based anticoagulants. Med Res Rev 24(2):151–181. https://doi.org/10.1002/med.10058
Drozd NN, Bannikova GE, Makarov VA, Varlamov VP (2006) Anticoagulant activity of sulfated polysaccharides. Russ J Experim Clin Pharmacol 69(6):51–60
Duus JØ, Gotfredsen CH, Bock K (2000) Carbohydrate structural determination by NMR spectroscopy: modern methods and limitations. Chem Rev 100(12):4589–4614. https://doi.org/10.1021/cr990302n
Ellis R, Green E, Winlove CP (2009) Structural analysis of glycosaminoglycans and proteoglycans by means of Raman microspectrometry. Connect Tissue Res 50:29–36. https://doi.org/10.1080/03008200802398422
Ermakova MF, Chistyakova AK, Shchukina LV, Pshenichnikova TA, Medvedeva EN, Neverova NA, Belovezhets LA, Babkin VA (2010) Effect of arabinogalactan isolated from Siberian larch on the baking value of soft wheat flour and bread quality. Russ J Bioorg Chem 36(7):951–956. https://doi.org/10.1134/S1068162010070277
Fredj D, Hassen CB, Elleuch S, Feki H, Boudjada NC, Mhiri T, Boujelbene M (2017) Structural, vibrational and optical properties of a new organic-inorganic material: (C5H8N3)2[BiCl5]. J Mater Res Bull 85:23–29. https://doi.org/10.1016/j.materresbull.2016.08.041
Garnjanagoonchorn W, Wongekalak L, Engkagul A (2007) Determination of chondroitin sulfate from different sources of cartilage. Chem Eng Process Process Intensif 46(5):465–471
Gerbst AG, Nikolaev AV, Yashunsky DV, Shashkov AS, Dmitrenok AS, Nifantiev NE (2017) Theoretical and NMR-based conformational analysis of phosphodiester-linked disaccharides. Sci Rep 7:8934. https://doi.org/10.1038/s41598-017-09055-x
Goellner EM, Utermoehlen J, Kramer R, Classen B (2011) Structure of arabinogalactan from Larix laricina and its reactivity with antibodies directed against type-II-arabinogalactans. Carbohydr Polym 86(4):1739–1744. https://doi.org/10.1016/j.carbpol.2011.07.006
Huang H, Zhang W-D (2010) Preparation of cellulose sulphate and evaluation of its properties. J Fiber Bioeng Informat 3(1):32–39. https://doi.org/10.3993/jfbi06201006
Huang X, Hu Y, Zhao X, Lu Y, Wang J, Zhang F, Sun J (2008a) Sulfated modification can enhance the adjuvant activity of astragalus polysaccharide for ND vaccine. Carbohydr Polym 73(2):303–308. https://doi.org/10.1016/j.carbpol.2007.11.032
Huang X, Wang D, Hu Y, Lu Y, Guo Z, Kong X, Sun J (2008b) Effect of sulfated astragalus polysaccharide on cellular infectivity of infectious bursal disease virus. Int J Biol Macromol 42(2):166–171. https://doi.org/10.1016/j.ijbiomac.2007.10.019
Jiao G, Yu G, Zhang J, Ewart S (2011) Chemical structures and bioactivities of sulfated polysaccharides from marine algae. Mar Drugs 9(2):196–223. https://doi.org/10.3390/md9020196
Karacsonyi S, Kovacik V, Alfoldi J, Kubackova M (1984) Chemical and 13C-NMR studies of an arabinogalactan from Larix sibirica L. Carbohydr Res 134(2):265–274. https://doi.org/10.1016/0008-6215(84)85042-9
Klepach T, Zhao H, Hu X, Zhang W, Stenutz R, Hadad MJ, Carmichael I, Serianni AS (2015) Informing saccharide structural NMR studies with density functional theory calculations. Methods Mol Biol 1273:289–331. https://doi.org/10.1007/978-1-4939-2343-4_20
Kostiro JA, Kovalskaja GN (2008) Sulphated arabinogalactan is a perspective domestically produced analog of sulodexide. Acta biomedica scientifica 2:117–119
Lee C, Yang W, Parr RG (1988) Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B 37:785. https://doi.org/10.1103/PhysRevB.37.785
Ma X, Guo Z, Wang D, Hu Y, Shen Z (2010) Effects of sulfated polysaccharides and their prescriptions on immune response of ND vaccine in chicken. Carbohydr Polym 82(1):9–13. https://doi.org/10.1016/j.carbpol.2010.04.013
Mainreck N, Brézillon S, Sockalingum GD, Maquart FX, Manfait M, Wegrowski Y (2011) Rapid characterization of glycosaminoglycans using a combined approach by infrared and Raman microspectroscopies. J Pharm Sci 100(2):441–450. https://doi.org/10.1002/jps.22288
Matsuo K, Namatame H, Taniguchi M, Gekko K (2009) Vacuum-ultraviolet circular dichroism analysis of glycosaminoglycans by synchrotron-radiation spectroscopy. Biosci Biotechnol Biochem 73(3):557–561. https://doi.org/10.1271/bbb.80605
Mestechkina NM, Shcherbukhin VD (2010) Sulfated polysaccharides and their anticoagulant activity: a review. Appl Biochem Microbiol 46(3):291–298. https://doi.org/10.1134/S000368381003004X
Nader HB, Lopes CC, Rocha HA, Santos EA, Dietrich CP (2004) Heparins and heparinoids: occurrence, structure and mechanism of antithrombotic and hemorrhagic activities. Curr Pharm Des 10(9):951–966. https://doi.org/10.2174/1381612043452758
Palivec V, Kopecký V, Jungwirth P, Bouř P, Kaminský J, Martinez-Seara H (2020) Simulation of Raman and Raman optical activity of saccharides in solution. Phys Chem Chem Phys 22:1983–1993. https://doi.org/10.1039/C9CP05682C
Pereira MS, Melo FR, Mourão PAS (2002) Is there a correlation between structure and anticoagulant action of sulfated galactans and sulfated fucans? Glycobiology 12(10):573–580. https://doi.org/10.1093/glycob/cwf077
Pereira L, Amado AM, Critchley AT, Velde F, Ribeiro-Claro PJA (2009) Identification of selected seaweed polysaccharides (phycocolloids) by vibrational spectroscopy (FTIR-ATR and FT-Raman). Food Hydrocoll 23(7):1903–1909. https://doi.org/10.1016/j.foodhyd.2008.11.014
Profant V, Johannessen C, Blanch EW, Bour P, Baumruk V (2019) Effects of sulfation and environment on structure of chodroitin sulfate studied by Raman optical activity. Phys Chem Chem Phys 21:7367–7377. https://doi.org/10.1039/C9CP00472F
Rudd TR, Skidmore MA, Guimond SE, Cosentino C, Torri G, Fernig DG, Lauder RM, Guerrini M, Yates EA (2009) Glycosaminoglycan origin and structure revealed by multivariate analysis of NMR and CD spectra. Glycobiology 19(1):52–67. https://doi.org/10.1093/glycob/cwn103
Rüther A, Forget A, Roy A, Carballo C, Mießmer F, Dukor RK, Nafie LA, Johannessen C, Prasad Shastri V, Lüdeke S (2017) Unravelling a direct role for polysaccharide β-strands in the higher order structure of physical hydrogels. Angew Chem 129(16):4674–4678. https://doi.org/10.1002/ange.201701019
Shanura Fernando IP, Asanka Sanjeewa KK, Samarakoon KW, Lee WW, Kim H-S, Kim E-A, Gunasekara UKDSS, Abeytunga DTU, Nanayakkara C, de Silva ED, Lee H-S, Jeon Y-J (2017) FTIR characterization and antioxidant activity of water soluble crude polysaccharides of Sri Lankan marine algae. Algae 32(1):75–86. https://doi.org/10.4490/algae.2017.32.12.1
Shklyaev OE, Kubicki JD, Watts HD, Crespi VH (2014) Constraints on Ib cellulose twist from DFT calculations of 13C NMR chemical shifts. Cellulose 21(6):3979–3991. https://doi.org/10.1007/s10570-014-0448-3
Shmidt MW, Baldridge KK, Boatz JA, Elbert ST, Gordon MS, Jensen JH, Koseki S, Matsunaga N, Nguyen KA, Su SJ, Windus TL, Dupuis M, Montgomery JA (1993) General atomic and molecular electronic structure system. J Comp Chem 14:1347. https://doi.org/10.1002/jcc.540141112
Stewart JJ (2004) Optimization of parameters for semiempirical methods IV: extension of MNDO, AM1, and PM3 to more main group elements. J Mol Model 10(2):155–164. https://doi.org/10.1007/s00894-004-0183-z
Tirado-Rives J, Jorgensen WL (2008) Performance of B3LYP density functional methods for a large set of organic molecules. J Chem Theory Comput 4:297–306. https://doi.org/10.1021/ct700248k
Tran TTV, Huy BT, Truong HB, Bui ML, Thanh TTT, Dao DQ (2018) Structure analysis of sulfated polysaccharides extracted from green seaweed Ulva lactuca: experimental and density functional theory studies. Monatsh Chem 149:197–205. https://doi.org/10.1007/s00706-017-2056-z
Vasil’eva NY, Levdansky AV, Kuznetsov BN, Skvortsova GP, Kazachenko AS, Djakovitch L, Pinel C (2015) Sulfation of arabinogalactan by sulfamic acid in dioxane. Russ J Bioorg Chem 41(7):725–731. https://doi.org/10.1134/S1068162015070158
Vasilyeva NYu, Levdansky AV, Kazachenko AS, Djakovitch L, Pinel C, Kuznetsov BN (2013) Sulfation of mechanically activated arabinogalactan by complex sulfuric anhydride–pyridine in pyridine medium. J Sib Fed Univ Chem 6(2):158–169
Willför S, Holmbom B (2004) Isolation and characterisation of water soluble polysaccharides from Norway spruce and Scots pine. Wood Sci Technol 38(3):173–179. https://doi.org/10.1007/s00226-003-0200-x
Yaffe NR, Almond A, Blanch EW (2010) A new route to carbohydrate secondary and tertiary structure using Raman spectroscopy and Raman optical activity. J Amer Chem Soc 132(31):10654–10655. https://doi.org/10.1021/ja104077n
Zhang H, Wang Z-Y, Yang L, Yang X, Wang X, Zhang Z (2011) In vitro antioxidant activities of sulfated derivatives of polysaccharides extracted from Auricularia auricular. Int J Mol Sci 12(5):3288–3302. https://doi.org/10.3390/ijms12053288
Zhang K, Brendler E, Fischer S (2010) FT Raman investigation of sodium cellulose sulfate. Cellulose 17(2):427–435. https://doi.org/10.1007/s10570-009-9375-0
Acknowledgements
The reported work was funded by RFBR and the government of Krasnoyarsk region according to the research project № 18-43-242003. The study was carried out using equipment of the Krasnoyarsk Regional Center of Research Equipment, Federal Research Center “Krasnoyarsk Science Center SB RAS”. Publication was also partially supported by Project FSWM-2020-0033 of Russian Ministry of Science and Education.The authors are grateful to I.V. Korolkova for IR-spectra.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Kazachenko, A.S., Tomilin, F.N., Pozdnyakova, A.A. et al. Theoretical DFT interpretation of infrared spectra of biologically active arabinogalactan sulphated derivatives. Chem. Pap. 74, 4103–4113 (2020). https://doi.org/10.1007/s11696-020-01220-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11696-020-01220-3