Abstract
Substantial equivalence is a critical concept for biosafety assessment of genetically modified (GM) crops. To investigate substantial equivalence among carotenoid-biofortified GM rice and five conventional rice cultivars having common white (three) and red (two) grain colors, profiles of 52 polar metabolites were analyzed using gas chromatography time-of-flight mass spectrometry. The results were compared to evaluate the differences among GM and non-GM rice cultivars using principal components analysis. The GM rice is more comparable to its non-transgenic counterpart rice variety according to the closer co-separation than for other cultivars tested. This suggests that profiling of unintended polar metabolites could be a useful tool to reveal substantial equivalence of GM rice.
References
AOAC (2000) Determination of lead, calcium, copper, iron, zinc, sodium, magnesium, phosphorus, potassium, manganese in food. AOAC official methods 999.11. AOAC, Gaithersburg, MD, USA
AOAC (2005a) Nitrogen (total) in fertilizers. AOAC official methods 955.04. AOAC, Gaithersburg, MD, USA
AOAC (2005b) Fat (crude) or ether extract in meat. AOAC official methods 960.39. AOAC, Gaithersburg, MD, USA
AOAC (2005c) Ash of flour. AOAC official methods 923.03. AOAC, Gaithersburg, MD, USA
AOAC (2005d) Total, soluble, and insoluble dietary fiber in foods. AOAC official methods 991.43. AOAC, Gaithersburg, MD, USA
AOAC (2005e) Protein efficiency ratio. AOAC official methods 982.30. AOAC, Gaithersburg, MD, USA
AOCS (1997a) Fatty acid composition by gas chromatography. Official methods and recommended practices of the American Oil Chemists. Method Ce 1–62. AOCS, Champaign, IL, USA
AOCS (1997b) Official methods and recommended practices of the American Oil Chemists. Official method Ba 12–75. AOCS, Champaign, IL, USA
Baisakh N, Rehana S, Rai M, Oliva N, Tan J, Mackill DJ, Khush GS, Datta K, Datta SK (2006) Marker-free transgenic (MFT) near-isogenic introgression lines (NIILs) of ‘golden’ indica rice (cv. IR64) with accumulation of provitamin A in the endosperm tissue. Plant Biotechnol J 4:467–475
Barros E, Lezar S, Anttonen MJ, van Dijk JP, Röhlig RM, Kok EJ, Engel KH (2010) Comparison of two GM maize varieties with a near-isogenic non-GM variety using transcriptomics, proteomics and metabolomics. Plant Biotechnol J 8:436–451
Catchpole GS, Beckmann M, Enot DP, Mondhe M, Zywicki B, Taylor J, Hardy N, Smith A, King RD, Kell DB, Fiehn O, Draper J (2005) Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci USA 102:14458–14462
Choe JS, Ahn HH, Nam HJ (2002) Comparison of nutritional composition in Korean rice. J Korean Soc Food Sci Nutr 31:885–892
Choi H, Moon JK, Park BS, Park HW, Park SY, Kim TS, Kim DH, Ryu TH, Kweon SJ, Kim JH (2012) Comparative nutritional analysis for genetically modified rice, Iksan483 and Milyang204, and nontransgenic counterparts. J Korean Soc Appl Biol Chem 55:19–26
Corpillo D, Gardini G, Vaira AM, Basso M, Aime S, Accotto GP, Fasano M (2004) Proteomics as a tool to improve investigation of substantial equivalence in genetically modified organisms: the case of a virus-resistant tomato. Proteomics 4:193–200
EFSA (2011) Guidance for risk assessment of food and feed from genetically modified plants. EFSA J 9:2150
Esteve MJ, Farré R, Frígola A, García-Cantabella JM (2001) Simultaneous determination of thiamin and riboflavin in mushrooms by liquid chromatography. J Agric Food Chem 49:1450–1454
Farré G, Chao Bai, Twyman RM, Capell T, Christou P, Zhu C (2011) Nutritious crops producing multiple carotenoids—a metabolic balancing act. Cell Press 16:532–540
Ha SH, Liang YS, Jung H, Ahn MJ, Suh SC, Kweon SJ, Kim DH, Kim YM, Kim JK (2010) Application of two bicistronic systems involving 2A and IRES sequences to the biosynthesis of carotenoids in rice endosperm. Plant Biotechnol J 8:928–938
Herman RA, Scherer PN, Phillips AM, Storer NP, Krieger M (2010) Safe composition levels of transgenic crops assessed via a clinical medicine model. Biotechnol J 5:172–182
Hoekenga OA (2008) Using metabolomics to estimate unintended effects in transgenic crop plants: problems, promises, and opportunities. J Biomol Tech 19:159–166
Jung H, Kim JK, Ha SH (2011) Use of animal viral internal ribosome entry site sequence makes multiple truncated transcripts without mediating polycistronic expression in rice. J Korean Soc Appl Biol Chem 54:678–684
Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A (2007) Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J Exp Bot 58:415–424
Kim JK, Lee SY, Chu SM, Lim SH, Suh SC, Lee YT, Cho HS, Ha SH (2010) Variation and correlation analysis of flavonoids and carotenoids in Korean pigmented rice (Oryza sativa L.) cultivars. J Agric Food Chem 58:12804–12809
Kim JK, Park SY, Ha SH, Lee SM, Lim SH, Yu CY, Suh SC, Kweon SJ (2011) Stable isotope dilution gas chromatography-time-of-flight mass spectrometry method for determining niacin in rice. Cereal Chem 88:397–399
Kim JK, Ha SH, Park SY, Lee SM, Kim HJ, Lim SH, Suh SC, Kim DH, Cho HS (2012) Determination of lipophilic compounds in genetically modified rice using gas chromatography-time-of-flight mass spectrometry. J Food Compos Anal 25:31–38
Kok EJ, Keijer J, Kleter GA, Kuiper HA (2008) Comparative safety assessment of plant-derived foods. Regul Toxicol Pharmacol 50:98–113
Kuiper HA, Kleter GA, Noteborn HP, Kok EJ (2001) Assessment of the food safety issues related to genetically modified foods. Plant J 27:503–528
Kusano M, Redestig H, Hirai T, Oikawa A, Matsuda F, Fukushima A, Arita M, Watanabe S, Yano M, Hiwasa-Tanase K, Ezura H, Saito K (2011) Covering chemical diversity of genetically modified tomatoes using metabolomics for objective substantial equivalence assessment. PLoS ONE 6:e16989
Landrum JT, Bone RA (2001) Lutein, zeaxanthin, and the macular pigment. Arch Biochem Biophys 385:28–40
Latta M, Eskin M (1980) A simple and rapid colorimetric method for phytate determination. J Agric Food Chem 28:1313–1315
Li X, He X, Luo Y, Xiao G, Jiang X, Huang K (2008) Comparative analysis of nutritional composition between herbicide-tolerant rice with bar gene and its non-transgenic counterpart. J Food Compos Anal 21:535–539
Nordic Council (2000) Safety assessment of novel food plants. Chemical analytical approaches to the establishment of substantial equivalence. TemaNord 1998:591. Nordic Council of Ministers, Copenhagen, Denmark
Oberdoerfer RB, Shillito RD, De Beuckeleer M, Mitten DH (2005) Rice (Oryza sativa L.) containing the bar gene is compositionally equivalent to the nontransgenic counterpart. J Agric Food Chem 53:1457–1465
OECD (2004) Environment, health and safety publications series on the safety of novel foods and feeds. No. 10. Consensus document on compositional considerations for new varieties of rice (Oryza sativa): key food and feed nutrients and anti-nutrients. OECD, Paris
Park SY, Lee SM, Lee JH, Ko HS, Kweon SJ, Suh SC, Shin KS, Kim JK (2012) Compositional comparative analysis between insect-resistant rice (Oryza sativa L.) with a synthetic cry1Ac gene and its non-transgenic counterpart. Plant Biotechnol Rep 6:29–37
Perera CO, Yen GM (2007) Functional properties of carotenoids in human health. Int J Food Prop 10:201–230
Sims A, Shoemaker D (1993) Simultaneous liquid chromatographic determination of thiamine and riboflavin in selected foods. J AOAC Int 76:1156–1160
Acknowledgments
This work was supported by grants from the National Academy of Agricultural Science (Code PJ008484), Rural Development Administration, Republic of Korea.
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Kim, J.K., Park, SY., Lee, S.M. et al. Unintended polar metabolite profiling of carotenoid-biofortified transgenic rice reveals substantial equivalence to its non-transgenic counterpart. Plant Biotechnol Rep 7, 121–128 (2013). https://doi.org/10.1007/s11816-012-0231-6
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DOI: https://doi.org/10.1007/s11816-012-0231-6