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Shifting the optimum pH of Bacillus circulans xylanase towards acidic side by introducing arginine

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Abstract

Electrostatic interactions are important in protein folding, binding, flexibility, stability and function. The pH at which the enzyme is maximally active is determined by the pKas of the active site residues, which are modulated by several factors including the change in electrostatics in its vicinity. As the acidic xylanases are important in food and animal feed industries, electrostatic interactions are introduced in Bacillus circulans xylanase to shift their pH optima towards the acidic side. Arg substitutions are made to modulate the pKas of the active site residues. Neutral residues are substituted by Arg in such a way that the substituted residue can make direct interaction with the catalytic residues. However, the mutations with other titratable residues (Asp, Arg, Lys, His, Tyr, and Ser) present in between the catalytic sites and the substituted sites are avoided. Site directed mutagenesis was conducted to confirm the strategy. The results show the shift in pH optima of the mutants towards the acidic side by 0.5–1.5 unit. Molecular dynamics simulation of the mutant V37R reveals that the decrease in activity is due to the increase in distance between the substrate oxygen atoms and catalytic glutamates.

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  1. School of Chemical and Biological Engineering, Seoul National University, Seoul, 151-742, Korea

    Subarna Pokhrel, Jeong Chan Joo & Young Je Yoo

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  1. Subarna Pokhrel
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  2. Jeong Chan Joo
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Correspondence to Young Je Yoo.

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Pokhrel, S., Joo, J.C. & Yoo, Y.J. Shifting the optimum pH of Bacillus circulans xylanase towards acidic side by introducing arginine. Biotechnol Bioproc E 18, 35–42 (2013). https://doi.org/10.1007/s12257-012-0455-x

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  • DOI: https://doi.org/10.1007/s12257-012-0455-x

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