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Occurrence and molecular identification of nematodes associated with brinjal (Solanum melongena L.) var. Mattu Gulla

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Abstract

The nematodes which belong to the family Longidoridae are obligatory plant parasites and are considered as economically significant pests since they cause severe crop losses around the world. Conventional identification of nematodes using morphological features is a time-consuming and challenging task. To overcome the challenges in conventional identification methods, rapid and reliable identification methods need to be established which will not only enable proper identification but also provide effective management program for nematodes which devastate the root system. In the present study, we have observed the nematode infection in a unique brinjal variety (Solanum melongena L. var. Mattu Gulla) grown in Mattu Village, Udupi District of Karnataka, India and identified the nematodes on the basis of molecular characterization using D3 expansion region of 28S rRNA gene sequence. Cephalobus cubaensis was found from the roots of Mattu Gulla for the first time. Our study will facilitate further screening and characterization of the root-knot and root-lesion nematode infections in both nursery as well as post-transplantation seedlings of Mattu Gulla in the field conditions.

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References

  • Al-Banna L, Ploeg AT, Williamson VM, Kaloshian I (2004) Discrimination of six Pratylenchus species using PCR and species-specific primers. J Nematol 36:142–146

    CAS  PubMed  PubMed Central  Google Scholar 

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    Article  CAS  Google Scholar 

  • Banu JG, Sankari Meena K, Selvi C, Manickam S (2017) Molecular marker-assisted selection for nematode resistance in crop plants. J Entomol Zool Stud 5:1307–1311

    Google Scholar 

  • Barrière A, Félix MA (2006) Isolation of C. elegans and related nematodes. In: The C. elegans Research Community (ed) WormBook, pp 1–19. https://doi.org/10.1895/wormbook.1.115.2, http://www.wormbook.org. Accessed 3 Oct 2018

  • Bernhard EC (1992) Soil nematode biodiversity. Biol Fertil Soils 14:99–103

    Article  Google Scholar 

  • Bhadury P, Austen MC, Bilton DT, Lambshead JD, Rogers AD, Smerdon GR (2005) Combined morphological and molecular analysis of individual nematodes through short-term preservation in formalin. Mole Ecol Notes 5:965–968

    Article  CAS  Google Scholar 

  • Bhat RV, Madhyastha MN (2007) Preserving the heritage of Mattu Gulla—a variety of brinjal unique to Udupi District. Curr Sci 93:905–907

    Google Scholar 

  • Brussaard L, Kuyper TW, Goede RGM (2001) On the relationships between nematodes, mycorrhizal fungi and plants: functional composition of species and plant performance. Plant Soil 232:155–165

    Article  CAS  Google Scholar 

  • Carrasco-Ballesteros SP, Castillo P, Adams BJ, Perez-Artes E (2007) Identification of Pratylenchus thornei, the cereal legume root-lesion nematode, based on SCAR-PCR and satellite DNA. Eur J Plant Pathol 118:115–125

    Article  CAS  Google Scholar 

  • Cook R, Yeates GW (1993) Nematode pests of grassland and forage crops. In: Evans K, Trudgill DL, Webster JM (eds) Plant parasitic nematodes in temperate agriculture. CABI Publishing, Wallingford, pp 305–350

    Google Scholar 

  • Decraemer W, Hunt DJ (2006) Structure and classification. In: Perry RN, Moens M (eds) Plant nematology. CAB International, Wallingford, pp 3–32

    Chapter  Google Scholar 

  • Desaeger JR, Rao MR, Bridge J (2004) Nematodes and other soilborne pathogens in agroforestry. In: van Noordwijk M, Cadisch G, Ong CK (eds) Below-ground interactions in tropical agroecosystems: concepts and models with multiple plant components. CABI, Wallingford, pp 263–283

    Chapter  Google Scholar 

  • Ferris H, Bongers T, De Goede RGM (2001) A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Appl Soil Ecol 18:13–29

    Article  Google Scholar 

  • Ganguly AK, Dutta TK (2012) Plant parasitic nematodes: an emerging problem under changing climate and agricultural practices. J Mycol Plant Pathol 43:541

    Google Scholar 

  • Gazaway W, Mullen JM, Sikora EJ (1995) Collecting soil and root samples for nematode analysis. Circ ANR 114:1–2

    Google Scholar 

  • Geographical Indications Journal (2011) Government of India, G.I. Application-199, 40, pp 20–24 (http://ipindia.nic.in/girindia/journal/Journal_40.pdf. Accessed 10 Mar 2012

  • Handop ZA, Carta LK, Skantar AM (2008) Taxonomy, morphology and phylogenetics of coffee-associated root-lesion nematodes, Pratylenchus spp. In: Souza RM (ed) Plant-Parasitic Nematodes of Coffee. Springer, Dordrecht, pp 29–50

    Chapter  Google Scholar 

  • Holterman M, Rybarczyk K, van den Elsen S, van Megen H, Mooyman P, Santiago RP, Bongers T, Bakker J, Helder J (2008) A ribosomal DNA-based framework for the detection and quantification of stress-sensitive nematode families in terrestrial habitats. Mol Ecol Resour 8:23–34

    Article  CAS  Google Scholar 

  • Inserra RN, Troccoli A, Gozel U, Bernard EC, Dunn D, Duncan LW (2007) Pratylenchus hippeastri n. sp. (Nematoda: pratylenchidae) from amaryllis in Florida with notes on P. scribneri and P. hexincisus. Nematol 9:25–42

    Article  CAS  Google Scholar 

  • Jain RK (1992) Nematode pests of vegetable crops. In: Bhatti DS, Walia RK (eds) Nematode pests of crops. CBS Publishers & Distributors, New Delhi, pp 77–97

    Google Scholar 

  • Jones KL, Todd TC, Herman MA (2006) Development of taxon-specific markers for high-throughput screening of microbial-feeding nematodes. Mol Ecol Notes 6:712–714

    Article  CAS  Google Scholar 

  • Jones JT, Haegeman A, Danchin EG, Gaur HS, Helder J, Jones MG, Kikuchi T, Manzanilla-López R, Palomares-Rius JE, Wesemael WM, Perry RN (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Mol Plant Pathol 14:946–961

    Article  Google Scholar 

  • Keiko GA, Mitani S (2000) Characterization of mutations induced by ethyl ethanesulfonate, UV, and Trimethylpsoralen in the nematode Caenorhabditis elegans. Biochem Biophys Res Commun 269:64–69

    Article  Google Scholar 

  • Kerrigan J, Rogers JD (2013) Biology, ecology and ultrastructure of Ascobotryozyma and Botryozyma, unique commensal nematode-associated yeasts. Mycologia 105:34–51

    Article  Google Scholar 

  • Khan MR (2015) Nematode diseases of crops in India. In: Awasthi LP (ed) Recent advances in the diagnosis and management of plant diseases. Springer, New Delhi, pp 183–224

    Chapter  Google Scholar 

  • Khan MR, Jain RK, Singh RV, Pramanik A (2010) Economically important plant parasitic nematodes distribution-atlas. Directorate of information and publications of agriculture. Indian Council of Agricultural Research, Krishi Anusandhan Bhavan, New Delhi, pp 1–145

  • Kornobis FW, Susulovska S, Susulovsky A, Subbotin SA (2015) Morphological and molecular characterization of Paralongidorus rex Andrássy, 1986 (Nematoda: Longidoridae) from Poland and Ukrain. Eur J Plant Pathol 141:385

    Article  Google Scholar 

  • Luc M (1987) A reappraisal of Tylenchina (Nemata). 7. The family Pratylenchidae Thorne, 1949. Revue de Nématologie 10:203–218

    Google Scholar 

  • Madani M, Subbotin SA, Moens M (2005) Quantitative detection of the potato cyst nematode, Globodera pallida, and the beet cyst nematode, Heterodera schachtii, using real-time PCR with SYBR green I dye. Mol Cell Probes 19:81–86

    Article  CAS  Google Scholar 

  • Munera GE, Bert W, Decraeme W (2009) Morphological and molecular characterisation of Pratylenchus araucensis n. sp. (Pratylenchidae), a root-lesion nematode associated with Musa plants in Colombia. Nematol 11:799–813

    Article  CAS  Google Scholar 

  • Neher DA (2001) Role of nematodes in soil health and their use as indicators. J Nematol 33:161–168

    CAS  PubMed  PubMed Central  Google Scholar 

  • Reddy PP, Singh DB, Ramkishun (1979) Effect of rootknot nematodes on the susceptibility of Pusa purple cluster brinjal to bacterial wilt. Curr Sci 48:915–916

    Google Scholar 

  • Ruehle JL (1973) Nematodes and forest trees—types of damage to tree roots. Annu Rev Phytopathol 11:99–118

    Article  Google Scholar 

  • Sasser JN, Freckman DW (1987) A world perspective on nematology: the role of the society. In: Veech JA, Dickson DW (eds) Vistas on nematology. Society of Nematologists, Maryland, pp 7–14

    Google Scholar 

  • Sato E, Min YY, Shirakashi T, Wada S, Toyota K (2007) Detection of the root-lesion nematode, Pratylenchus penetrans (Cobb), in a nematode community using real-time PCR. Jpn J Nematol 37:87–92

    Article  Google Scholar 

  • Sohlenius B (1980) Abundance, biomass and contribution to energy flow by soil nematodes in terrestrial ecosystems. Oikos 34:186–194

    Article  Google Scholar 

  • Stiernagle T (1999) Maintenance of C. elegans. In: Hope IA (ed) C. elegans: a practical approach. Oxford University Press, Oxford, pp 51–67

    Google Scholar 

  • Subbotin SA, Waeyenberge L, Molokanova IA, Moens M (1999) Identification of Heterodera avenae group species by morphometrics and rDNA-RFLPs. Nematol 1:195–207

    Article  Google Scholar 

  • Subbotin SA, Ragsdale EJ, Mullens T, Roberts P, Mundo-Ocampo M, Baldwin JG (2008) A phylogenetic framework for root lesion nematodes of the genus Pratylenchus (Nematoda): evidence from 18S and D2D3 expansion segments of 28S ribosomal RNA genes and morphological characters. Mol Phylogenet Evol 48:491–505

    Article  CAS  Google Scholar 

  • Uehara T, Mizukubo T, Kushida A, Momota Y (1998) Identification of Pratylenchus penetrans (Cobb) by PCR using ITS-based species specific primer. Jpn J Nematol 28:1–7

    Article  Google Scholar 

  • Waeyenberge L, Ryss A, Moens M, Pinochet J, Vrain TC (2000) Molecular characterization of 18 Pratylenchus species using rDNA restriction fragment length polymorphism. Nematol 2:135–142

    Article  CAS  Google Scholar 

  • Yeates GW (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biol Fertil Soil 37:199–210

    Google Scholar 

Download references

Acknowledgements

We are grateful to Manipal Academy of Higher Education (MAHE), Manipal, Karnataka, India and TIFAC-CORE and FIST, DST, New Delhi and K-FIST, VGST, Govt. of Karnataka for the facilities. We are indebted to Prof. K. Satyamoorthy, Director, Manipal School of Life Sciences, MAHE for encouragement, support and critical comments. We would like to thank Mrs. Shashikala Tantry for her experimental assistance and Mr. Kiran K.R. for the format of article; Shri Mohan Rao and Lakshmana Rao, Members of Mattu Gulla Growers Association, Mattu Village, Udupi District, Karnataka, India for their help in collection of plant samples.

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Correspondence to Annamalai Muthusamy.

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Muthusamy, A., Singh, R., Paul, B. et al. Occurrence and molecular identification of nematodes associated with brinjal (Solanum melongena L.) var. Mattu Gulla. Indian Phytopathology 72, 453–459 (2019). https://doi.org/10.1007/s42360-019-00153-6

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