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Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal

  • Biochemistry, Biophysics and Molecular Biology
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Abstract

High-throughput method of sequencing was applied to determine the complete nucleotide sequence of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal (East Siberia). The assembled genome has a total length of 98 Mbp, the mean coverage is 33x. Structure-functional annotation of the genome was performed.

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References

  1. Tréguer, P., Nelson, D.M., Van Bennekom, A.J., et al., Science, 1995, vol. 268, pp. 375–379.

    Article  PubMed  Google Scholar 

  2. Armbrust, E.V., Berges, J.A., Bowler, C., et al., Science, 2004, vol. 306, no. 5693, pp. 79–86.

    Article  CAS  PubMed  Google Scholar 

  3. Bowler, C., Allen, A.E., Badger, J.H., et al., Nature, 2008, vol. 456, no. 7219, pp. 239–244.

    Article  CAS  PubMed  Google Scholar 

  4. Ravin, N.V., Galachyants, Yu.P., Mardanov, A.V., et al., Curr. Genet., 2010, vol. 56, pp. 215–223.

    Article  CAS  PubMed  Google Scholar 

  5. Galachyants, Yu.P., Morozov, A.A., Mardanov, A.V., et al., Int. J. Biol., 2012, vol. 4, pp. 27–35.

    CAS  Google Scholar 

  6. Shishlyannikov, S.M., Zakharova, Yu.R., Volokitina, N.A., et al., Limnol. Oceanogr. Meth., 2011, vol. 9, pp. 478–484.

    Article  CAS  Google Scholar 

  7. Parra, G., Bradnam, K., and Korf, I., Bioinformatics, 2007, vol. 23, pp. 1061–1067.

    Article  CAS  PubMed  Google Scholar 

  8. Holt, C. and Yandell, M., BMC Bioinformatics, 2011, vol. 12, p. 491.

    Article  PubMed Central  PubMed  Google Scholar 

  9. Connolly, J.A., Oliver, M.J., Beaulieu, J.M., et al., J. Phycol., 2008, vol. 44, pp. 124–131.

    Article  CAS  Google Scholar 

  10. Götz, S., García-Gómez, J.M., Terol, J., et al., Nucl. Acids Res., 2008, vol. 36, pp. 3420–3435.

    Article  PubMed Central  PubMed  Google Scholar 

  11. Jones, P., Binns, D., Chang, H.Y., et al., Bioinformatics, 2014, vol. 30, pp. 1236–1240.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  12. Li, L., Stoeckert, C.J., and Roos, D.S., Genome Res., 2003, vol. 13, pp. 2178–2189.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  13. Shrestha, R.P., Tesson, B., Norden-Krichmar, T., et al., BMC Genomics, 2012, vol. 13 p. 499.

  14. Du, C., Liang, J.-R., Chen, D.-D., et al., J. Proteome Res., 2014, vol. 13, pp. 720–734.

    Article  CAS  PubMed  Google Scholar 

  15. Khabudaev, K.V., Petrova, D.P., Grachev, M.A., and Likhoshway, Ye.V., BMC Genomics, 2014, vol. 15, p. 173.

    Article  PubMed Central  PubMed  Google Scholar 

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Authors and Affiliations

  1. Limnological Institute, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia

    Y. P. Galachyants, Yu. R. Zakharova, D. P. Petrova, A. A. Morozov, A. M. Marchenkov, K. V. Khabudaev, Ye. V. Likhoshway & M. A. Grachev

  2. Institute for System Dynamics and Control Theory, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia

    I. A. Sidorov

  3. Lomonosov Moscow State University, Moscow, Russia

    M. D. Logacheva

  4. Central Research Institute of Epidemiology, Moscow, Russia

    M. L. Markelov

Authors
  1. Y. P. Galachyants
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  2. Yu. R. Zakharova
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  3. D. P. Petrova
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  4. A. A. Morozov
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  5. I. A. Sidorov
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  6. A. M. Marchenkov
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  7. M. D. Logacheva
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  8. M. L. Markelov
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  9. K. V. Khabudaev
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  10. Ye. V. Likhoshway
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  11. M. A. Grachev
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Corresponding author

Correspondence to Y. P. Galachyants.

Additional information

Original Russian Text © Y.P. Galachyants, Yu.R. Zakharova, D.P. Petrova, A.A. Morozov, I.A. Sidorov, A.M. Marchenkov, M.D. Logacheva, M.L. Markelov, K.V. Khabudaev, Ye.V. Likhoshway, M.A. Grachev, 2015, published in Doklady Akademii Nauk, 2015, Vol. 461, No. 3, pp. 348–352.

The article was translated by the authors.

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Galachyants, Y.P., Zakharova, Y.R., Petrova, D.P. et al. Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal. Dokl Biochem Biophys 461, 84–88 (2015). https://doi.org/10.1134/S1607672915020064

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  • DOI: https://doi.org/10.1134/S1607672915020064

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