Skip to main content
SpringerLink
Log in

Protein Supersecondary Structures

  • Book
  • © 2013

Overview

Editors:
  1. Alexander E. Kister

    1. , Department of Mathematics, Rutgers University, Piscataway, USA

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  • Focuses on diverse approaches to the study of supersecondary structures
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts

Part of the book series: Methods in Molecular Biology (MIMB, volume 932)

This is a preview of subscription content, log in via an institution to check access.

Access this book

Log in via an institution
eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access

Licence this eBook for your library

Institutional subscriptions

Table of contents (18 protocols)

  1. Front Matter

    Pages i-xvii
    Download chapter PDF

  2. Super-secondary Structure: A Historical Perspective

    • Michael G. Rossmann
    Pages 1-4

  3. Representation of Supersecondary Structure

    1. Front Matter

      Pages 5-5
      Download chapter PDF

    2. Hierarchical Representation of Supersecondary Structures Using a Graph-Theoretical Approach

      • Ina Koch, Annika Kreuchwig, Patrick May
      Pages 7-33

    3. Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers

      • Søren Thirup, Vikas Gupta, Esben M. Quistgaard
      Pages 35-50

    4. Structure Description and Identification Using the Tableau Representation of Protein Folding Patterns

      • Arun S. Konagurthu, Arthur M. Lesk
      Pages 51-59

  4. Supersecondary Structure Prediction

    1. Front Matter

      Pages 61-61
      Download chapter PDF

  5. Super-secondary Structure Prediction

    1. Computational Prediction of Secondary and Supersecondary Structures

      • Ke Chen, Lukasz Kurgan
      Pages 63-86

    2. A Survey of Machine Learning Methods for Secondary and Supersecondary Protein Structure Prediction

      • Hui Kian Ho, Lei Zhang, Kotagiri Ramamohanarao, Shawn Martin
      Pages 87-106

    3. Beyond Supersecondary Structure: The Global Properties of Protein Sequences

      • S. Rackovsky
      Pages 107-114

    4. Creating Supersecondary Structures with BuildBeta

      • Silvia Crivelli, Nelson Max
      Pages 115-140

    5. A Modular Perspective of Protein Structures: Application to Fragment Based Loop Modeling

      • Narcis Fernandez-Fuentes, Andras Fiser
      Pages 141-158

    6. Residue–Residue Contacts: Application to Analysis of Secondary Structure Interactions

      • Vladimir Potapov, Marvin Edelman, Vladimir Sobolev
      Pages 159-173

  6. Supersecondary Structure and Protein Folding

    1. Front Matter

      Pages 175-175
      Download chapter PDF

  7. Supersecondary Structure and Protein Folding

    1. Super-secondary Structures and Modeling of Protein Folds

      • Alexander V. Efimov
      Pages 177-189

    2. Computational Simulations of Protein Folding to Engineer Amino Acid Sequences to Encourage Desired Supersecondary Structure Formation

      • Bernard S. Gerstman, Prem P. Chapagain
      Pages 191-204

    3. Protein Folding at Atomic Resolution: Analysis of Autonomously Folding Supersecondary Structure Motifs by Nuclear Magnetic Resonance

      • Lorenzo Sborgi, Abhinav Verma, Mourad Sadqi, Eva de Alba, Victor Muñoz
      Pages 205-218

    4. Artificial Supersecondary Structures Based on Aromatic Oligoamides

      • Hai-Yu Hu, Chuan-Feng Chen
      Pages 219-234

  8. Other Applications of Supersecondary Structure to Protein Biology

    1. Front Matter

      Pages 235-235
      Download chapter PDF

    2. Cross-β-Sheet Supersecondary Structure in Amyloid Folds: Techniques for Detection and Characterization

      • Raimon Sabaté, Salvador Ventura
      Pages 237-257
Back to top

Keywords

About this book

Super secondary structure(SSS) helps to understand the relationship between primary and tertiary structure of proteins.  In Protein Supersecondary Structure: Methods and Protocols expert researchers in the field detail  the usefulness of the study of super secondary structure in different areas of protein research. This is done through four main studies SSS representation, SSS prediction, SSS and protein folding, and other application of SSS concept to protein biology. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

 

Authoritative and practical, Protein Supersecondary Structure:  Methods and Protocols highlight some of the major advances in the many fast-growing areas of supersecondary structure research.

Editors and Affiliations

  • , Department of Mathematics, Rutgers University, Piscataway, USA

    Alexander E. Kister

Bibliographic Information

  • Book Title: Protein Supersecondary Structures

  • Editors: Alexander E. Kister

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-62703-065-6

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2013

  • Hardcover ISBN: 978-1-62703-064-9Published: 18 September 2012

  • Softcover ISBN: 978-1-4939-6249-5Published: 23 August 2016

  • eBook ISBN: 978-1-62703-065-6Published: 18 September 2012

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XVII, 320

  • Topics: Protein Science, Protein Structure

Publish with us

Policies and ethics

Back to top

Search

Navigation