Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Adler, K., Broadbent, J., Garlick, R., Joseph, R., Khimani, A., Mikulskis, A., Rapiejko, P., Killian, J. (2000). MICROMAXTM: A highly sensitive system for differential gene expression on microarray. In Microarray Biochip Technology, Edited by Mark Schena, 221–230.
Baggerly, K.A., Coombes, K.R., Hess, K.R., Stivers, D.N., Abruzzo, L.V., and Zhang, W. (2001). Identifying differentially expressed genes in cDNA microarray experiments. J Comp. Biol., 8, 639–59.
Baldi, P., and Long, A.D. (2001). A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics. 7, 509–19.
Bobrow, M.N., Harris, T.D., Shaughnessy, K.J. and Litt, G.J. (1989). Catalyzed reporter deposition, a novel method of signal amplificaiton. Application to immunoassays. J. Immunol. Methods. 125, 279–285.
Hess, K.R., Zhang, W., Baggerly, K.A., Stivers, D.N., Coombes, K.R. (2001). Microarrays: handling the deluge of data and extracting reliable information. Trends Biotechnol. 19, 463–8.
Lin, L. (1989). A Concordance Correlation Coefficient to Evaluate Reproducibility. Biometrics 45, 255–268.
Lin, L. (1992). Assay validation using the concordance correlation coefficient. Biometrics 48, 599–604.
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallo, M.V., Chee, M.S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H., Brown, E.L. (1996). Expression monitoring of hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14, 1675–80.
Phillips, J. and Eberwine, J. H. (1996). Antisense RNA amplification: a linear amplification method for analyzing the mRNA population from single living cells. Methods 10, 283–8.
Ramdas, L., Wang, J., Hu, L., Cogdell, D., Taylor, E., Zhang, W. (2001). Comparative Evaluation of Laser-based Microarray Scanners. Bio Techniques 31, 546–552.
Roozemond, R.C. (1976). Ultramicrochemical determination of nucleic acids in individual cells using the Zeiss UMSP-I microspectrophotometer. Application to isolated rat hepatocytes of different ploidy clases. Histochem J, 625–638.
Stears, R.L., Getts, R.C., and Gullans, S.R. (2000). A novel, sensitive detection system for high-density microarrays using dendrimer technology, Physiol. Genomics, 3, 93–99.
Uemura et al., (1980). Age-related changes in neuronal RNA content in rhesus moneyks (Macaca mulatta). Brain Res Bull 5, 117–119.
Van Gelder, R.N., Von Zastrow, M.E., Yool, A., Dement, W.C., Barchas, J.D., Eberwine, J.H. (1990). Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci. U S A. 87, 1663–7.
Wang, E., Miller, L.D., Ohnmacht, G.A., Liu, E.T. and Marincola, F.M. (2000). High-fidelity mRNA amplification for gene profiling. Nat. Biotechnol 18, 457–459.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2003 Kluwer Academic Publishers
About this chapter
Cite this chapter
Wang, J., Coombes, K.R., Baggerly, K., Hu, L., Hamilton, S.R., Zhang, W. (2003). Statistical Considerations in the Assessment of cDNA Microarray Data Obtained Using Amplification. In: Zhang, W., Shmulevich, I. (eds) Computational and Statistical Approaches to Genomics. Springer, Boston, MA. https://doi.org/10.1007/0-306-47825-0_2
Download citation
DOI: https://doi.org/10.1007/0-306-47825-0_2
Publisher Name: Springer, Boston, MA
Print ISBN: 978-1-4020-7023-5
Online ISBN: 978-0-306-47825-3
eBook Packages: Springer Book Archive