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Simulation and Visualization for DNA Computing in Microreactors

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Advances in Natural Computation (ICNC 2005)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 3611))

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Abstract

A simulation program is a useful tool to predict the hybridization error propagated through a microfluidic system. This paper shows the hybridization event between solution strands and capture probes. The program provides a Graphical User Interface that allows the user to insert parameters as well as to observe results showing critical values and additional visualization of the simulation process. The program and its interface have been developed in Java, making it platform independent and web-based.

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References

  1. van Noort, D., Tang, Z.-L., Landweber, L.F.: Fully controllable microfluidics for molecular computers. JALA 9 (2004)

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  2. van Noort, D., Wagler, P., McCaskill, J.S.: The role of microreactors in molecular computing. Smart Mater. Struct. 11, 756–760 (2002)

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  3. McCaskill, J.S.: Optically programming DNA computing in microflow reactors. BioSystems 59, 125–138 (2001)

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Author information

Authors and Affiliations

  1. Biointelligence Lab., School of Computer Science and Engineering, Seoul National University, San 56-1, Sinlim-dong, Gwanak-gu, Seoul, 151-742, Korea

    Danny van Noort

  2. Department of Computer Science, University of Kentucky, Lexington, KY, 40506, USA

    Yuan Hong, Joseph Ibershoff & Jerzy W. Jaromczyk

Authors
  1. Danny van Noort
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  2. Yuan Hong
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  3. Joseph Ibershoff
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  4. Jerzy W. Jaromczyk
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Editor information

Editors and Affiliations

  1. School of Electrical and Electronic Engineering, Nanyang Technological University, Block S1, Nanyang Avenue, 639798, Singapore

    Lipo Wang

  2. School of Software, Sun Yat-Sen University, 510275, Guangzhou, China

    Ke Chen

  3. School of Computer Engineering, Nanyang Technological University, BLK N4, 2b-39, Nanyang Avenue, 639798, Singapore

    Yew Soon Ong

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© 2005 Springer-Verlag Berlin Heidelberg

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van Noort, D., Hong, Y., Ibershoff, J., Jaromczyk, J.W. (2005). Simulation and Visualization for DNA Computing in Microreactors. In: Wang, L., Chen, K., Ong, Y.S. (eds) Advances in Natural Computation. ICNC 2005. Lecture Notes in Computer Science, vol 3611. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11539117_162

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  • DOI: https://doi.org/10.1007/11539117_162

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-28325-6

  • Online ISBN: 978-3-540-31858-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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