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An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification

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DNA Computing (DNA 2001)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2340))

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Abstract

We present a simulation tool for frequently used DNA operations on the molecular level including side effects based on a probabilistic approach. The specification of the considered operations is directly adapted from detailed observations of molecular biological processes in laboratory studies. Bridging the gap between formal models of DNA computing, we use process description methods from biochemistry and show the closeness of the simulation to the reality.

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References

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Author information

Authors and Affiliations

  1. Institute of Theoretical Computer Science, Dresden University of Technology, Mommsenstr. 13, i Dresden, D-01062, Germany

    Thomas Hinze & Monika Sturm

  2. Institute of Computer Engineering, Dresden University of Technology, Mommsenstr. 13, i Dresden, D-01062, Germany

    Uwe Hatnik

Authors
  1. Thomas Hinze
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  2. Uwe Hatnik
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  3. Monika Sturm
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Editor information

Editors and Affiliations

  1. Department of Mathematics, University of South Florida, 4202 E. Fowler A. PHY 114, Tampa, FL, 33620, USA

    Nataša Jonoska

  2. Department of Chemistry, New York University, New York, NY, 10003, USA

    Nadrian C. Seeman

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© 2002 Springer-Verlag Berlin Heidelberg

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Hinze, T., Hatnik, U., Sturm, M. (2002). An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification. In: Jonoska, N., Seeman, N.C. (eds) DNA Computing. DNA 2001. Lecture Notes in Computer Science, vol 2340. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-48017-X_1

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  • DOI: https://doi.org/10.1007/3-540-48017-X_1

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-43775-8

  • Online ISBN: 978-3-540-48017-4

  • eBook Packages: Springer Book Archive

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