References
Carlier, J.-P., G. K’Ouas, I. Bonne, A. Lozniewski and F. Mory. 2004. Orib-acterium sinus gen. nov., sp. nov., within the family ‘Lachnospiraceae’ (phylum Firmicutes). Int. J. Syst. Evol. Microbiol. 54: 1611–1615.
Carlier, J.-P., G. K’Ouas and X.Y. Han. 2007. Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. Int. J. Syst. Evol. Microbiol. 57: 725–729.
Chen, S. and X. Dong. 2004. Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water. Int. J. Syst. Evol. Microbiol. 54: 2257–2262.
Cicarelli, F.D., T. Doerks, C. von Mering, C.J. Creevey, B. Snel and P. Bork. 2006. Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283–1287.
Cole, J.R., B. Chai, R.J. Farris, Q. Wang, A.S. Kulam-Syed-Mohideen, D.M. McGarrell, A.M. Bandela, E. Cardenas, G.M. Garrity and J.M. Tiedje. 2007. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35: D169–172.
Collins, M.D., A. Wiernik, E. Falsen and P.A. Lawson. 2005. Atopococ-cus tabaci gen. nov., sp. nov., a novel Gram-positive, catalase-negative, coccus-shaped bacterium isolated from tobacco. Int. J. Syst. Evol. Microbiol. 55: 1693–1696.
Dahle, H. and N.K. Birkeland. 2006. Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a North Sea oil well. Int. J. Syst. Evol. Micro-biol. 56: 1539–1545.
Garcia, M.T., V. Gallego, A. Ventosa and E. Mellado. 2005. Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 55: 1789–1795.
Garnova, E.S., T.N. Zhilina, T.P. Tourova and A.M. Lysenko. 2003. Anoxynatronum sibiricum gen.nov., sp.nov. alkaliphilic saccharolytic anaerobe from cellulolytic community of Nizhnee Beloe (Transbaikal region). Extremophiles 7: 213–220.
Garrity, G.M., J.A. Bell and T. Lilburn. 2005. The Revised Road Map to the Manual. In Brenner, Krieg, Staley and Garrity (ed.), Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays. Springer, New York, pp. 159–220.
Greetham, H.L., G.R. Gibson, C. Giffard, H. Hippe, B. Merkhoffer, U. Steiner, E. Falsen and M.D. Collins. 2004. Allobaculum stercoricanis gen. nov., sp. nov., isolated from canine faeces. Anaerobe 10: 301–307.
Hatayama, K., H. Shoun, Y. Ueda and A. Nakamura. 2006. Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov. Int. J. Syst. Evol. Microbiol. 56: 2545–2551.
Holmstrom, K., M.D. Collins, T. Moller, E. Falsen and P.A. Lawson. 2004. Subdoligranulum variable gen. nov., sp. nov. from human feces. Anaerobe 10:197–203.
Ishikawa, M., K. Nakajima, Y. Itamiya, S. Furukawa, Y. Yamamoto and K. Yamasato. 2005. Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 55: 2427–2439.
Jeon, C.O., J.M. Lim, J.M. Lee, L.H. Xu, C.L. Jiang and C.J. Kim. 2005. Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkaliba-cillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55: 1891–1896.
Kämpfer, P., R. Rosselló-Mora, E. Falsen, H.J. Busse and B.J. Tindall. 2006. Cohnella thermotolerans gen. nov., sp. nov., and classification of ‘Paenibacillus hongkongensis’ as Cohnella hongkongensis sp. nov. Int. J. Syst. Evol. Microbiol. 56: 781–786.
Kato, S., S. Haruta, Z.J. Cui, M. Ishii, A. Yokota and Y. Igarashi. 2004. Clostridium straminisolvens sp. nov., a moderately thermophilic, aero-tolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. Int. J. Syst. Evol. Microbiol. 54: 2043–2047.
Lee, Y.J., C.S. Romanek, G.L. Mills, R.C. Davis, W.B. Whitman and J. Wiegel. 2006. Gracilibacter thermotolerans gen. nov., sp. nov., an anaerobic, thermotolerant bacterium from a constructed wetland receiving acid sulfate water. Int. J. Syst. Evol. Microbiol. 56: 2089–2093.
Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Förster, I. Brettske, S. Gerber, A.W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. König, T. Liss, R. Lüßmann, M. May, B. Nonhoff, B. Reichel, R. Stre-hlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode and K.H. Schleifer. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32: 1363–1371.
Ludwig, W. and H.P. Klenk. 2005. Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Brenner, Krieg, Staley and Garrity (ed.), Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays. Springer, New York, pp. 49–65.
Ludwig, W. and K.H. Schleifer. 2005. Molecular phylogeny of bacteria based on comparative sequence analysis of conserved genes. In Sapp (ed.), Microbial phylogeny and evolution, concepts and controversies. Oxford University Press, New York, pp. 70–98.
Matthies, C., A. Gößner, G. Acker, A. Schramm and H.L. Drake. 2004. Lactovum miscens gen. nov., sp. nov., an aerotolerant, psychrotolerant, mixed-fermentative anaerobe from acidic forest soil. Res Microbiol 155: 847–854.
Mori, K., H. Kim, T. Kakegawa and S. Hanada. 2003. A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. Extremophiles 7: 283–290.
Nakamura, K., S. Haruta, S. Ueno, M. Ishii, A. Yokota and Y. Igarashi. 2004. Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. Int J Syst Evol Microbiol 54: 1063–1069.
Nunes, I., I. Tiago, A.L. Pires, M.S. da Costa and A. Verissimo. 2006. Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. Int. J. Syst. Evol. Microbiol. 56: 1841–1845.
Prüsse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies and F.O. Glöckner. 2007. SILVA: a comprehensive online resource for quality checked and aligned rRNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188–7196.
Slobodkin, A.I., T.P. Tourova, N.A. Kostrikina, A.M. Lysenko, K.E. German, E.A. Bonch-Osmolovskaya and N.-K. Birkeland. 2006. Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, Fe(III)-reducing bacterium of the order Clostridiales. Int. J. Syst. Evol. Microbiol. 56: 369–372.
Song, Y.L., C.X. Liu, M. McTeague, P. Summanen and S.M. Finegold. 2004. Clostridium bartlettii sp. nov., isolated from human faeces. Anaerobe 10 179–184.
Spring, S., W. Ludwig, M.C. Marquez, A. Ventosa and K.-H. Schleifer. 1996. Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int. J. Syst. Bacteriol. 46: 492–496.
Stamatakis, A.P., T. Ludwig and H. Meier. 2005. RAxML-II: A program for sequential, parallel & distributed inference of large phylogenetic trees. Concur. Comput: Prac. Exper. 17: 1705–1723.
Wery, N., J.M. Moricet, V. Cueff, J. Jean, P. Pignet, F. Lesongeur, M.A. Cambon-Bonavita and G. Barbier. 2001. Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 51: 1789–1796.
Wyss, C., F.E. Dewhirst, B.J. Paster, T. Thurnheer and A. Luginbühl. 2005. Guggenheimella bovis gen. nov., sp. nov., isolated from lesions of bovine dermatitis digitalis. Int. J. Syst. Evol. Microbiol. 55: 667–671.
Xing, D., N. Ren, Q. Li, M. Lin, A. Wang and L. Zhao. 2006. Ethanoligen-ens harbinense gen. nov., sp. nov., isolated from molasses wastewater. Int. J. Syst. Evol. Microbiol. 56: 755–760.
Zhilina, T.N., V.V. Kevbrin, T.P. Tourova, A.M. Lysenko, N.A. Kostrikina and G.A. Zavarzin. 2005. Clostridium alkalicellum sp. nov., an obligately alkaliphilic cellulolytic bacterium from a soda lake in the Baikal region. Mikrobiologiya 74: 557–566.
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Ludwig, W., Schleifer, KH., Whitman, W.B. (2009). Revised road map to the phylum Firmicutes . In: De Vos, P., et al. Bergey’s Manual® of Systematic Bacteriology. Springer, New York, NY. https://doi.org/10.1007/978-0-387-68489-5_1
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