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References

  • Carlier, J.-P., G. K’Ouas, I. Bonne, A. Lozniewski and F. Mory. 2004. Orib-acterium sinus gen. nov., sp. nov., within the family ‘Lachnospiraceae’ (phylum Firmicutes). Int. J. Syst. Evol. Microbiol. 54: 1611–1615.

    Article  CAS  PubMed  Google Scholar 

  • Carlier, J.-P., G. K’Ouas and X.Y. Han. 2007. Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. Int. J. Syst. Evol. Microbiol. 57: 725–729.

    Article  CAS  PubMed  Google Scholar 

  • Chen, S. and X. Dong. 2004. Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water. Int. J. Syst. Evol. Microbiol. 54: 2257–2262.

    Article  CAS  PubMed  Google Scholar 

  • Cicarelli, F.D., T. Doerks, C. von Mering, C.J. Creevey, B. Snel and P. Bork. 2006. Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283–1287.

    Article  Google Scholar 

  • Cole, J.R., B. Chai, R.J. Farris, Q. Wang, A.S. Kulam-Syed-Mohideen, D.M. McGarrell, A.M. Bandela, E. Cardenas, G.M. Garrity and J.M. Tiedje. 2007. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35: D169–172.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Collins, M.D., A. Wiernik, E. Falsen and P.A. Lawson. 2005. Atopococ-cus tabaci gen. nov., sp. nov., a novel Gram-positive, catalase-negative, coccus-shaped bacterium isolated from tobacco. Int. J. Syst. Evol. Microbiol. 55: 1693–1696.

    Article  CAS  PubMed  Google Scholar 

  • Dahle, H. and N.K. Birkeland. 2006. Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a North Sea oil well. Int. J. Syst. Evol. Micro-biol. 56: 1539–1545.

    Article  CAS  Google Scholar 

  • Garcia, M.T., V. Gallego, A. Ventosa and E. Mellado. 2005. Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 55: 1789–1795.

    Article  CAS  PubMed  Google Scholar 

  • Garnova, E.S., T.N. Zhilina, T.P. Tourova and A.M. Lysenko. 2003. Anoxynatronum sibiricum gen.nov., sp.nov. alkaliphilic saccharolytic anaerobe from cellulolytic community of Nizhnee Beloe (Transbaikal region). Extremophiles 7: 213–220.

    CAS  PubMed  Google Scholar 

  • Garrity, G.M., J.A. Bell and T. Lilburn. 2005. The Revised Road Map to the Manual. In Brenner, Krieg, Staley and Garrity (ed.), Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays. Springer, New York, pp. 159–220.

    Google Scholar 

  • Greetham, H.L., G.R. Gibson, C. Giffard, H. Hippe, B. Merkhoffer, U. Steiner, E. Falsen and M.D. Collins. 2004. Allobaculum stercoricanis gen. nov., sp. nov., isolated from canine faeces. Anaerobe 10: 301–307.

    Article  CAS  PubMed  Google Scholar 

  • Hatayama, K., H. Shoun, Y. Ueda and A. Nakamura. 2006. Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov. Int. J. Syst. Evol. Microbiol. 56: 2545–2551.

    Article  CAS  PubMed  Google Scholar 

  • Holmstrom, K., M.D. Collins, T. Moller, E. Falsen and P.A. Lawson. 2004. Subdoligranulum variable gen. nov., sp. nov. from human feces. Anaerobe 10:197–203.

    Article  CAS  PubMed  Google Scholar 

  • Ishikawa, M., K. Nakajima, Y. Itamiya, S. Furukawa, Y. Yamamoto and K. Yamasato. 2005. Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 55: 2427–2439.

    Article  CAS  PubMed  Google Scholar 

  • Jeon, C.O., J.M. Lim, J.M. Lee, L.H. Xu, C.L. Jiang and C.J. Kim. 2005. Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkaliba-cillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55: 1891–1896.

    Article  CAS  PubMed  Google Scholar 

  • Kämpfer, P., R. Rosselló-Mora, E. Falsen, H.J. Busse and B.J. Tindall. 2006. Cohnella thermotolerans gen. nov., sp. nov., and classification of ‘Paenibacillus hongkongensis’ as Cohnella hongkongensis sp. nov. Int. J. Syst. Evol. Microbiol. 56: 781–786.

    Article  PubMed  Google Scholar 

  • Kato, S., S. Haruta, Z.J. Cui, M. Ishii, A. Yokota and Y. Igarashi. 2004. Clostridium straminisolvens sp. nov., a moderately thermophilic, aero-tolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. Int. J. Syst. Evol. Microbiol. 54: 2043–2047.

    Article  PubMed  Google Scholar 

  • Lee, Y.J., C.S. Romanek, G.L. Mills, R.C. Davis, W.B. Whitman and J. Wiegel. 2006. Gracilibacter thermotolerans gen. nov., sp. nov., an anaerobic, thermotolerant bacterium from a constructed wetland receiving acid sulfate water. Int. J. Syst. Evol. Microbiol. 56: 2089–2093.

    Article  CAS  PubMed  Google Scholar 

  • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Förster, I. Brettske, S. Gerber, A.W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. König, T. Liss, R. Lüßmann, M. May, B. Nonhoff, B. Reichel, R. Stre-hlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode and K.H. Schleifer. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32: 1363–1371.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Ludwig, W. and H.P. Klenk. 2005. Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Brenner, Krieg, Staley and Garrity (ed.), Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2, The Proteobacteria, Part A, Introductory Essays. Springer, New York, pp. 49–65.

    Chapter  Google Scholar 

  • Ludwig, W. and K.H. Schleifer. 2005. Molecular phylogeny of bacteria based on comparative sequence analysis of conserved genes. In Sapp (ed.), Microbial phylogeny and evolution, concepts and controversies. Oxford University Press, New York, pp. 70–98.

    Google Scholar 

  • Matthies, C., A. Gößner, G. Acker, A. Schramm and H.L. Drake. 2004. Lactovum miscens gen. nov., sp. nov., an aerotolerant, psychrotolerant, mixed-fermentative anaerobe from acidic forest soil. Res Microbiol 155: 847–854.

    Article  CAS  PubMed  Google Scholar 

  • Mori, K., H. Kim, T. Kakegawa and S. Hanada. 2003. A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. Extremophiles 7: 283–290.

    Article  CAS  PubMed  Google Scholar 

  • Nakamura, K., S. Haruta, S. Ueno, M. Ishii, A. Yokota and Y. Igarashi. 2004. Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. Int J Syst Evol Microbiol 54: 1063–1069.

    Article  CAS  PubMed  Google Scholar 

  • Nunes, I., I. Tiago, A.L. Pires, M.S. da Costa and A. Verissimo. 2006. Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. Int. J. Syst. Evol. Microbiol. 56: 1841–1845.

    Article  CAS  PubMed  Google Scholar 

  • Prüsse, E., C. Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies and F.O. Glöckner. 2007. SILVA: a comprehensive online resource for quality checked and aligned rRNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188–7196.

    Article  Google Scholar 

  • Slobodkin, A.I., T.P. Tourova, N.A. Kostrikina, A.M. Lysenko, K.E. German, E.A. Bonch-Osmolovskaya and N.-K. Birkeland. 2006. Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, Fe(III)-reducing bacterium of the order Clostridiales. Int. J. Syst. Evol. Microbiol. 56: 369–372.

    Article  CAS  PubMed  Google Scholar 

  • Song, Y.L., C.X. Liu, M. McTeague, P. Summanen and S.M. Finegold. 2004. Clostridium bartlettii sp. nov., isolated from human faeces. Anaerobe 10 179–184.

    Article  CAS  PubMed  Google Scholar 

  • Spring, S., W. Ludwig, M.C. Marquez, A. Ventosa and K.-H. Schleifer. 1996. Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int. J. Syst. Bacteriol. 46: 492–496.

    Article  Google Scholar 

  • Stamatakis, A.P., T. Ludwig and H. Meier. 2005. RAxML-II: A program for sequential, parallel & distributed inference of large phylogenetic trees. Concur. Comput: Prac. Exper. 17: 1705–1723.

    Article  Google Scholar 

  • Wery, N., J.M. Moricet, V. Cueff, J. Jean, P. Pignet, F. Lesongeur, M.A. Cambon-Bonavita and G. Barbier. 2001. Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 51: 1789–1796.

    Article  CAS  PubMed  Google Scholar 

  • Wyss, C., F.E. Dewhirst, B.J. Paster, T. Thurnheer and A. Luginbühl. 2005. Guggenheimella bovis gen. nov., sp. nov., isolated from lesions of bovine dermatitis digitalis. Int. J. Syst. Evol. Microbiol. 55: 667–671.

    Article  CAS  PubMed  Google Scholar 

  • Xing, D., N. Ren, Q. Li, M. Lin, A. Wang and L. Zhao. 2006. Ethanoligen-ens harbinense gen. nov., sp. nov., isolated from molasses wastewater. Int. J. Syst. Evol. Microbiol. 56: 755–760.

    Article  CAS  PubMed  Google Scholar 

  • Zhilina, T.N., V.V. Kevbrin, T.P. Tourova, A.M. Lysenko, N.A. Kostrikina and G.A. Zavarzin. 2005. Clostridium alkalicellum sp. nov., an obligately alkaliphilic cellulolytic bacterium from a soda lake in the Baikal region. Mikrobiologiya 74: 557–566.

    CAS  Google Scholar 

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Ludwig, W., Schleifer, KH., Whitman, W.B. (2009). Revised road map to the phylum Firmicutes . In: De Vos, P., et al. Bergey’s Manual® of Systematic Bacteriology. Springer, New York, NY. https://doi.org/10.1007/978-0-387-68489-5_1

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