Skip to main content

Phase Extension and Refinement Using Convolutional and Related Equation Systems

  • Chapter
Theory and Practice of Direct Methods in Crystallography

Abstract

The mathematical solution of a set of relations among the phases of the structure factors of a crystal may be attempted either ab initio, or by starting from some partial or approximate information concerning the desired solution. In the first case one speaks of a direct method of phase determination, in the second case of a direct method of phase extension or refinement. The preceding chapters have dealt principally with the first case, although phase extension and refinement have been mentioned at some length as .components of methods whose overall purpose is ab initio phasing. Starting with this chapter, attention will shift to the second case. Mathematically the shift will involve a change in the type of relation system solved. Chapter 8 will discuss methods of phase extension and refinement based on the solution of convolutional and related systems of equations, and Chapters 9 and 10 will deal, respectively, with methods involving the maximization of Karle-Hauptman determinants and the solution of relation systems arising out of structural redundancy. The shift will involve also a change in solution technique.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Agarwal, R. C., and Isaacs, N. W. (1976). Private communication.

    Google Scholar 

  • Ahmed, F. R., and Hall, S. R. (1975). In Crystallographic Computing Techniques, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 71–84.

    Google Scholar 

  • Barrett, A. N., and Zwick, M. (1971). Acta Crystallogr. Sect. A 27, 6.

    Article  ADS  Google Scholar 

  • Carpenter, G. B. (1969). Principles of Crystal Structure Determination, W. A. Benjamin, New York.

    Google Scholar 

  • Collins, D. M., Brice, M. D., la Cour, T. F. M., and Legg, M. J. (1975). In Crystallographic Computing Techniques, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 330–335.

    Google Scholar 

  • Collins, D. M., Cotton, F. A., Hazen, E. E., Jr., Meyer, E. F., Jr., and Morimoto, C. N. (1975). Science 190, 1047.

    Article  ADS  Google Scholar 

  • Coulter, C. L. (1965). J. Mol. Biol. 12, 292.

    Article  Google Scholar 

  • Coulter, C. L., and Dewar, R. B. K. (1971). Acta Crystallogr. Sect. B 27, 1730.

    Article  Google Scholar 

  • Cutfield, J. F., Dodson, E. J., Dodson, G. G., Hodgkin, D. C., Isaacs, N. W., Sakabe, K., and Sakabe, N. (1975). Acta Crystallogr. Sect. A 31, S21.

    Google Scholar 

  • Davies, A. R., and Rollett, J. S. (1976). Acta Crystallogr. Sect. A 32, 17.

    Article  ADS  Google Scholar 

  • Destro, R . (1972). Report of C.E.C.A.M. workshop, Orsay, France.

    Google Scholar 

  • Gassmann, J . (1975). In Crystallographic Computing Techniques, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 144–154.

    Google Scholar 

  • Gassmann, J. (1976). Acta Crystallogr. Sect. A 32, 274.

    Article  ADS  Google Scholar 

  • Gassmann, J., and Zechmeister, K. (1972). Acta Crystallogr. Sect. A 28, 270.

    Article  ADS  Google Scholar 

  • Hall, S. R . (1969). In Crystallographic Computing, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 67–70.

    Google Scholar 

  • Hauptman, H. (1971). Abstract H3, American Crystallographic Association Winter Meeting, Columbia, South Carolina.

    Google Scholar 

  • Hendrickson, W. A. (1973). Trans. Am. Crystallogr. Assoc. 9, 61.

    Google Scholar 

  • Hendrickson, W. A. (1975), J. Mol. Biol. 91, 226.

    Article  Google Scholar 

  • Hendrickson, W. A., and Karle, J. (1973). J. Biol. Chem. 248, 3327.

    Google Scholar 

  • Hendrickson, W. A., Love, W. E., and Karle, J. (1973). J. Mol. Biol. 74, 331.

    Article  Google Scholar 

  • Hoppe, W. (1962). Acta Crystallogr. 15, 13.

    Article  Google Scholar 

  • Hoppe, W. (1963), Z. Kristallogr. 118, 121.

    Article  Google Scholar 

  • Hoppe, W., and Gassmann, J. (1964). Ber. Bunsenges. Phys. Chem. 68, 808.

    Google Scholar 

  • Hoppe, W., and Gassmann, J. (1968). Acta Crystallogr. Sect. B 24, 97.

    Article  Google Scholar 

  • Hoppe, W., Gassmann, J., and Zechmeister, K. (1969). In Crystallographic Computing, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 26–36.

    Google Scholar 

  • Hughes, E. W. (1953). Acta Crystallogr. 6, 871.

    Article  Google Scholar 

  • Karle, J. (1964). Advances in Structure Research by Diffraction Methods, Interscience, New York, pp. 55–89.

    Google Scholar 

  • Karle, J. (1969). Advances in Chemical Physics, Interscience, New York, Vol. XVI, pp. 131–222.

    Book  Google Scholar 

  • Karle, J., and Hauptman, H. (1950). Acta Crystallogr. 3, 181.

    Article  MathSciNet  Google Scholar 

  • Karle, J., and Hauptman, H. (1956). Acta Crystallogr. 9, 635.

    Article  MathSciNet  Google Scholar 

  • Karle, J., and Karle, I. L. (1966). Acta Crystallogr. 21, 849.

    Article  Google Scholar 

  • Kartha, G. (1969). Acta Crystallogr. Sect. A 25, S87.

    Google Scholar 

  • Kolba, D. P., and Parks, T. W. (1977). IEEE Trans. Acoust. Speech Signal Process. 25, 281.

    Article  MATH  Google Scholar 

  • Krabbendam, H., and Kroon, J. (1971). Acta Crystallogr. Sect. A 27, 48.

    Article  ADS  Google Scholar 

  • Lessinger, L. (1976). Acta Crystallogr. Sect. A 32, 538.

    Article  ADS  Google Scholar 

  • Luenberger, D. G. (1969). Optimization by Vector Space Methods, Wiley, New York.

    MATH  Google Scholar 

  • Podjarny, A . (1976). Talk given at International School for Crystallography, Erice, Sicily.

    Google Scholar 

  • Reeke, G. N., Jr., and Lipscomb, W. N. (1969). Acta Crystallogr. Sect. B 25, 2614.

    Article  Google Scholar 

  • Rothbauer, R. (1976). Acta Crystallogr. Sect. A 32, 169.

    Article  ADS  Google Scholar 

  • Sayre, D. (1952). Acta Crystallogr. 5, 60.

    Article  Google Scholar 

  • Sayre, D. (1972). Acta Crystallogr. Sect. A 28, 210.

    Article  ADS  Google Scholar 

  • Sayre, D. (1974). Acta Crystallogr. Sect. A 30, 180.

    Google Scholar 

  • Sayre, D . (1975). In Crystallographic Computing Techniques, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 322–327.

    Google Scholar 

  • Sayre, D., and Toupin, R. (1975). Acta Crystallogr. Sect. A 31, S20.

    Google Scholar 

  • Simonov, V. I. (1975). In Crystallographic Computing Techniques, Ed. F. R. Ahmed, Munksgaard, Copenhagen, pp. 138–143.

    Google Scholar 

  • Simonov, V. I . (1976). Abstract SC1, American Crystallographic Association Summer Symposium, Buffalo, New York.

    Google Scholar 

  • Silverman, H. F. (1977). IEEE Trans. Acoust. Speech Signal Process. 25, 152.

    Article  ADS  MATH  Google Scholar 

  • Slepian, D., and Pollack, H. O. (1961). Bell System Tech. J. 40, 43.

    MathSciNet  MATH  Google Scholar 

  • Stout, G. H., and Jensen, L. H. (1968). X-Ray Structure Determination, MacMillan, New York.

    Google Scholar 

  • Tsoucaris, G. (1976). Private communication.

    Google Scholar 

  • Weinzierl, J. E., Eisenberg, D., and Dickerson, R. E. (1969). Acta Crystallogr. Sect. B 25, 380.

    Article  Google Scholar 

  • White, P. S., and Woolfson, M. M. (1975). Acta Crystallogr. Sect. A 31, 53.

    Article  ADS  Google Scholar 

  • Zwick, M., Bantz, D., and Hughes, J. (1976). Ultramicroscopy 1, 275.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1980 Plenum Press, New York

About this chapter

Cite this chapter

Sayre, D. (1980). Phase Extension and Refinement Using Convolutional and Related Equation Systems. In: Ladd, M.F.C., Palmer, R.A. (eds) Theory and Practice of Direct Methods in Crystallography. Springer, Boston, MA. https://doi.org/10.1007/978-1-4613-2979-4_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-4613-2979-4_8

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-2981-7

  • Online ISBN: 978-1-4613-2979-4

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics