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Data-Driven Model Order Reduction for Diffeomorphic Image Registration

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Information Processing in Medical Imaging (IPMI 2019)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11492))

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Abstract

This paper presents a data-driven model reduction algorithm to reduce the computational complexity of diffeomorphic image registration in the context of large deformation diffeomorphic metric mapping (LDDMM). In contrast to previous methods that repeatedly evaluate a full-scale regularization term governed by partial differential equations (PDEs) in the parameterized space of deformation fields, we introduce a reduced order model (ROM) to substantially lower the overall computational cost while maintaining accurate alignment. Specifically, we carefully construct the registration regularizer with a compact set of data-driven basis functions learned by proper orthogonal decomposition (POD), based on a key fact that the eigen spectrum decays extremely fast. This projected regularization in a low-dimensional subspace naturally leads to effective model order reduction with the underlying coherent structures well preserved. The iterative optimization involving computationally expensive PDE solvers is now carried out efficiently in a low-dimensional subspace. We demonstrate the proposed method in neuroimaging applications of pairwise image registration and template estimation for population studies.

J. Wang and W. Xing—Authors contributed equally to the work.

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References

  1. Arnol’d, V.I.: Sur la géométrie différentielle des groupes de Lie de dimension infinie et ses applications à l’hydrodynamique des fluides parfaits. Ann. Inst. Fourier 16, 319–361 (1966)

    Article  MathSciNet  Google Scholar 

  2. Arsigny, V., Commowick, O., Pennec, X., Ayache, N.: A Log-Euclidean framework for statistics on diffeomorphisms. In: Larsen, R., Nielsen, M., Sporring, J. (eds.) MICCAI 2006. LNCS, vol. 4190, pp. 924–931. Springer, Heidelberg (2006). https://doi.org/10.1007/11866565_113

    Chapter  Google Scholar 

  3. Ashburner, J., Friston, K.J.: Unified segmentation. Neuroimage 26(3), 839–851 (2005)

    Article  Google Scholar 

  4. Ashburner, J., Friston, K.J.: Diffeomorphic registration using geodesic shooting and gauss-newton optimisation. NeuroImage 55(3), 954–967 (2011)

    Article  Google Scholar 

  5. Avants, B.B., Epstein, C.L., Grossman, M., Gee, J.C.: Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12(1), 26–41 (2008)

    Article  Google Scholar 

  6. Beg, M.F., Miller, M.I., Trouvé, A., Younes, L.: Computing large deformation metric mappings via geodesic flows of diffeomorphisms. Int. J. Comput. Vis. 61(2), 139–157 (2005)

    Article  Google Scholar 

  7. Bullo, F.: Invariant affine connections and controllability on lie groups. Technical report, technical Report for Geometric Mechanics, California Institute of Technology (1995)

    Google Scholar 

  8. Christensen, G.E., Rabbitt, R.D., Miller, M.I.: Deformable templates using large deformation kinematics. IEEE Trans. Image Process. 5(10), 1435–1447 (1996)

    Article  Google Scholar 

  9. Cockburn, B., Shu, C.W.: TVB Runge-Kutta local projection discontinuous Galerkin finite element method for conservation laws. II. General framework. Math. Comput. 52(186), 411–435 (1989)

    MathSciNet  MATH  Google Scholar 

  10. Durrleman, S., Prastawa, M., Gerig, G., Joshi, S.: Optimal data-driven sparse parameterization of diffeomorphisms for population analysis. In: Székely, G., Hahn, H.K. (eds.) IPMI 2011. LNCS, vol. 6801, pp. 123–134. Springer, Heidelberg (2011). https://doi.org/10.1007/978-3-642-22092-0_11

    Chapter  Google Scholar 

  11. Fotenos, A.F., Snyder, A., Girton, L., Morris, J., Buckner, R.: Normative estimates of cross-sectional and longitudinal brain volume decline in aging and AD. Neurology 64(6), 1032–1039 (2005)

    Article  Google Scholar 

  12. Hajek, B., Wong, E.: Stochastic processes in information and dynamical systems (1989)

    Google Scholar 

  13. Holmes, P., Lumley, J.L., Berkooz, G., Rowley, C.W.: Turbulence, Coherent Structures, Dynamical Systems and Symmetry. Cambridge University Press, Cambridge (2012)

    Book  Google Scholar 

  14. Jack Jr., C.R., et al.: The Alzheimer’s disease neuroimaging initiative (ADNI): MRI methods. J. Magn. Reson. Imaging: Official J. Int. Soc. Magn. Reson. Med. 27(4), 685–691 (2008)

    Article  Google Scholar 

  15. Joshi, S., Davis, B., Jomier, M., Gerig, G.: Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage 23, S151–S160 (2004)

    Article  Google Scholar 

  16. Luo, J., et al.: A feature-driven active framework for ultrasound-based brain shift compensation. arXiv preprint arXiv:1803.07682 (2018)

  17. Miller, M.I., Trouvé, A., Younes, L.: Geodesic shooting for computational anatomy. J. Math. Imaging Vis. 24(2), 209–228 (2006). https://doi.org/10.1007/s10851-005-3624-0

    Article  MathSciNet  Google Scholar 

  18. Newman, A.J.: Model reduction via the Karhunen-Loeve expansion part I: an exposition. Technical report (1996)

    Google Scholar 

  19. Niethammer, M., Huang, Y., Vialard, F.-X.: Geodesic regression for image time-series. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011. LNCS, vol. 6892, pp. 655–662. Springer, Heidelberg (2011). https://doi.org/10.1007/978-3-642-23629-7_80

    Chapter  Google Scholar 

  20. Polzin, T., Niethammer, M., Heinrich, M.P., Handels, H., Modersitzki, J.: Memory efficient LDDMM for lung CT. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9902, pp. 28–36. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46726-9_4

    Chapter  Google Scholar 

  21. Qiu, A., Younes, L., Miller, M.I.: Principal component based diffeomorphic surface mapping. IEEE Trans. Med. Imaging 31(2), 302–311 (2012)

    Article  Google Scholar 

  22. Shah, A., Xing, W., Triantafyllidis, V.: Reduced-order modelling of parameter-dependent, linear and nonlinear dynamic partial differential equation models. Proc. Math. Phys. Eng. Sci. 473(2200) (2017)

    Article  MathSciNet  Google Scholar 

  23. Singh, N., Hinkle, J., Joshi, S., Fletcher, P.T.: A vector momenta formulation of diffeomorphisms for improved geodesic regression and atlas construction. In: International Symposium on Biomedial Imaging (ISBI), April 2013

    Google Scholar 

  24. Vaillant, M., Miller, M.I., Younes, L., Trouvé, A.: Statistics on diffeomorphisms via tangent space representations. NeuroImage 23, S161–S169 (2004)

    Article  Google Scholar 

  25. Vialard, F.X., Risser, L., Rueckert, D., Cotter, C.J.: Diffeomorphic 3D image registration via geodesic shooting using an efficient adjoint calculation. Int. J. Comput. Vis. 97(2), 229–241 (2012)

    Article  MathSciNet  Google Scholar 

  26. Wells, W., Viola, P., Atsumi, H., Nakajima, S., Kikinis, R.: Multi-modal volume registration by maximization of mutual information. Med. Image Anal. 1, 35–51 (1996)

    Article  Google Scholar 

  27. Zhang, M., Singh, N., Fletcher, P.T.: Bayesian estimation of regularization and atlas building in diffeomorphic image registration. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds.) IPMI 2013. LNCS, vol. 7917, pp. 37–48. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-38868-2_4

    Chapter  Google Scholar 

  28. Zhang, M., Fletcher, P.T.: Finite-dimensional lie algebras for fast diffeomorphic image registration. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 249–260. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-19992-4_19

    Chapter  Google Scholar 

  29. Zhang, M., et al.: Frequency diffeomorphisms for efficient image registration. In: Niethammer, M., et al. (eds.) IPMI 2017. LNCS, vol. 10265, pp. 559–570. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-59050-9_44

    Chapter  Google Scholar 

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Acknowledgments

This work is supported by DARPA TRADES HR0011-17-2-0016.

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Correspondence to Jian Wang .

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Wang, J., Xing, W., Kirby, R.M., Zhang, M. (2019). Data-Driven Model Order Reduction for Diffeomorphic Image Registration. In: Chung, A., Gee, J., Yushkevich, P., Bao, S. (eds) Information Processing in Medical Imaging. IPMI 2019. Lecture Notes in Computer Science(), vol 11492. Springer, Cham. https://doi.org/10.1007/978-3-030-20351-1_54

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  • DOI: https://doi.org/10.1007/978-3-030-20351-1_54

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