Skip to main content

The use of microsatellites for genetic analysis of natural populations

  • Chapter
Molecular Ecology and Evolution: Approaches and Applications

Part of the book series: Experientia Supplementum ((EXS,volume 69))

Summary

Microsatellites, tandemly repeated units of 2 to 5 bp are distributed throughout eukaryotic genomes. Length variation within microsatellites, caused by DNA slippage, can be amplified by PCR and used for DNA profiling. In this paper potential applications and limitations of this technique are discussed. Two case studies for pilot whales (Globicephala melas) and sheep (Ovis aries) exemplify the suitability of microsatellites for analyzing natural populations. Other currently available profiling techniques are compared to microsatellite analysis.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Amos, B., Schlötterer, C. and Tautz, D. (1993) Social structure of pilot whales revealed by analytical DNA profiling. Science 260: 670–672.

    Article  PubMed  CAS  Google Scholar 

  • Armour, J.A.L., Povey, S., Jeremiah, S. and Jeffreys, A.J. (1990) Systematic cloning of human minisatellites from ordered array charomid libraries. Genomics 8: 501–512.

    Article  PubMed  CAS  Google Scholar 

  • Brenig, B. and Brem, G. (1991) Direct cloning of sequence tagged microsatellite sites by DNA affinity chromatography. Nucleic Acid Res. 19: 5441.

    Article  PubMed  CAS  Google Scholar 

  • Browne, D.L. and Litt, M. (1992) Characterization of (CA)n microsatellites with degenerate sequencing primers. Nucleic Acid Res. 20: 141.

    Article  PubMed  CAS  Google Scholar 

  • Ellegren, H. (1991) DNA typing of museum birds. Nature 354: 113.

    Article  PubMed  CAS  Google Scholar 

  • Gibbs, H.L., Weatherhead, P.J., Boag, P.T., White, B.N., Tabak, L.M. and Hoysak, D. (1990) Realized reproductive success of polygynous red-winged blackbirds revealed by DNA markers. Science 250: 1394–1397.

    Article  PubMed  CAS  Google Scholar 

  • Hadrys, H., Balick, M. and Schierwater, B. (1992) Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1: 55–63.

    Article  PubMed  CAS  Google Scholar 

  • Hagelberg, E., Gray, I.C. and Jeffreys, A.J. (1992) Identification of the skeletal remains of a murder victim by DNA analysis. Nature 352: 427–429.

    Article  Google Scholar 

  • Hamilton, D.W. (1964) The genetical evolution of social behaviour 1 & 2. J. Theoret. Biol. 7: 1–52.

    Article  CAS  Google Scholar 

  • Henderson, S.T. and Petes, T.D. (1992) Instability of Simple Sequence DNA in Saccharmoyces cerevisiae. Mol. Chem. Biol. 12: 2749–2757.

    CAS  Google Scholar 

  • Hubert, R., Weber, J.L., Schmitt, K., Zhang, L. and Arnheim, N. (1992) A new source of polymorphic DNA markers for sperm typing: analysis of microsatellite repeats in single cells. Am. J. Hum. Genet. 51: 985–991.

    PubMed  CAS  Google Scholar 

  • Hughes, C.R. and Queller, D.C. (1993) Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Mol. Ecol. 2: 131–137.

    Article  PubMed  CAS  Google Scholar 

  • Ito, T., Smith, C.L. and Cantor, C.R. (1992) Sequence-specific DNA purification by triplex affinity capture. Proc. Natl. Acad. Sci. USA 89: 495–498.

    Article  PubMed  CAS  Google Scholar 

  • Jeffreys, A.J., Wilson, V. and Thein, S.L. (1985) Hypervariable ‘minisatellite’ regions in human DNA. Nature 314: 67–73.

    Article  PubMed  CAS  Google Scholar 

  • Jeffreys, A.J., Royle, N.K., Wilson, V. and Wong, Z. (1988) Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in human DNA. Nature 332: 278–281.

    Article  PubMed  CAS  Google Scholar 

  • Karl, S.A. and Avise, J.C. (1992) Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs. Science 256: 100–102.

    Article  PubMed  CAS  Google Scholar 

  • Karl, S.A. and Avise, J.C. (1993) PCR-based assays of mendelian polymorphisms from anonymous single-copy nuclear DNA: techniques and applications for population genetics. Mol. Biol. Evol. 10: 342–361.

    PubMed  CAS  Google Scholar 

  • Levinson, G. and Gutman, G.A. (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4: 203–221.

    PubMed  CAS  Google Scholar 

  • Litt, M. and Luty, J.A. (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 397–401.

    PubMed  CAS  Google Scholar 

  • Love, J.M., Knight, A.M., Mc Aleer, M. A. and Todd, J.A. (1990) Towards construction of a high resolution map of the mouse genome using PCR-analysed microsatellites. Nucleic Acid Res. 18: 4123–4130.

    Article  PubMed  CAS  Google Scholar 

  • Moore, S.S., Sargeant, L.L., King, T.J., Mattick, J.S., Georges, M. and Hetzel, D.J.S. (1991) The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics 10: 654–660.

    Article  PubMed  CAS  Google Scholar 

  • Rassmann, K., Schlötterer, C. and Tautz, D. (1991) Isolation of simple-sequence loci for use in polymerase chain reaction-based DNA fingerprinting. Electrophoresis 12: 113–118.

    Article  PubMed  CAS  Google Scholar 

  • Romano, P., Aresu, O., Parodi, B., Manniello, A., Campi, G., Angelini, G., Romani, M., Iannota, B., Rondanina, G., Ruzzon, T. and Santi, L. (1993) Molecular probe data base: a database on synthetic oligonucleotides. Nucleic Acid Res. 21: 3007–3009.

    Article  PubMed  CAS  Google Scholar 

  • Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B. and Ehrlich, H.A. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487–491.

    Article  PubMed  CAS  Google Scholar 

  • Schlötterer, C., Amos, B. and Tautz, D. (1991) Conservation of polymorphic simple sequence loci in cretacean species. Nature 354: 63–65.

    Article  PubMed  Google Scholar 

  • Schlötterer, C. (1993) Non-radioactive analysis of multiplexed microsatellite reactions using a direct blotting-sequencing apparatus. Nucleic Acid Res. 21: 780.

    Article  PubMed  Google Scholar 

  • Scott, M.P., Haymes, K.M. and Williams, S.M. (1992) Parentage analysis using RAPD PCR. Nucleic Acid Res. 20: 5493.

    Article  PubMed  CAS  Google Scholar 

  • Tautz, D. (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acid Res. 17: 6463–6471.

    Article  PubMed  CAS  Google Scholar 

  • Weber, J.L. and May, P.E. (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388–396.

    PubMed  CAS  Google Scholar 

  • Weber J.L. (1990) Informativeness of human (dC-dA)n · (dG-dT)n polymorphisms. Genomics 7: 524–530.

    Article  PubMed  CAS  Google Scholar 

  • Weissenbach, J., Gyapay, G., Dib, C., Vignal, A., Morissette, J., Millasseau, P., Vaysseix, G. and Lathrop, M. (1992) A second-generation linkage map of the human genome. Nature 359: 794–801.

    Article  PubMed  CAS  Google Scholar 

  • Weller, S.G. and Ornduff, R. (1977) Cryptic self-incompatibility in Amsinckia grandiflora. Evolution 31: 47–51.

    Article  Google Scholar 

  • Williams, J.G.K., Kubelik, À.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18: 6531–6535.

    Article  PubMed  CAS  Google Scholar 

  • Zhang, L., Cui, X., Schmitt, K., Hubert, R., Navidi, W. and Arnheim, N. (1992) Whole genome amplification from a single cell: implications for genetic analysis. Proc. Natl. Acad. Sci. USA 89: 5847–5851.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1994 Springer Basel AG

About this chapter

Cite this chapter

Schlötterer, C., Pemberton, J. (1994). The use of microsatellites for genetic analysis of natural populations. In: Schierwater, B., Streit, B., Wagner, G.P., DeSalle, R. (eds) Molecular Ecology and Evolution: Approaches and Applications. Experientia Supplementum, vol 69. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-7527-1_11

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-7527-1_11

  • Publisher Name: Birkhäuser, Basel

  • Print ISBN: 978-3-0348-7529-5

  • Online ISBN: 978-3-0348-7527-1

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics