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Polyglutamine-Independent Features in Ataxin-3 Aggregation and Pathogenesis of Machado-Joseph Disease

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Polyglutamine Disorders

Abstract

The expansion of a trinucleotide (CAG) repeat, translated into a polyglutamine expanded sequence in the protein encoded by the MJD gene, was identified over 20 years ago as the causative mutation in a severe neurodegenerative disorder originally diagnosed in individuals of Portuguese ancestry. This incapacitating disease, called Machado-Joseph disease or spinocebellar ataxia type 3, is integrated into a larger group of neurodegenerative disorders—the polyglutamine expansion disorders—caused by extension of a CAG repeat in the coding sequence of otherwise unrelated genes. These diseases are generally linked with the appearance of intracellular inclusions , which despite having a controversial role in disease appearance and development represent a characteristic common fingerprint in all polyglutamine-related disorders. Although polyglutamine expansion is an obvious trigger for neuronal dysfunction, the role of the different domains of these complex proteins in the function and aggregation properties of the carrier proteins is being uncovered in recent studies. In this review the current knowledge about the structural and functional features of full-length ataxin-3 protein will be discussed. The intrinsic conformational dynamics and interplay between the globular and intrinsically disordered regions of ataxin-3 will be highlighted, and a perspective picture of the role of known ataxin-3 post-translational modifications on regulating ataxin-3 aggregation and function will be drawn.

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References

  1. Masino L, Musi V, Menon RP, Fusi P, Kelly G, Frenkiel TA, Trottier Y, Pastore A (2003) Domain architecture of the polyglutamine protein ataxin-3: a globular domain followed by a flexible tail. FEBS Lett 549:21–25

    Article  CAS  Google Scholar 

  2. Costa Mdo C, Paulson HL (2012) Toward understanding Machado-Joseph disease. Prog Neurobiol 97:239–257

    Article  Google Scholar 

  3. Matos CA, de Macedo-Ribeiro S, Carvalho AL (2011) Polyglutamine diseases: the special case of ataxin-3 and Machado-Joseph disease. Prog Neurobiol 95:26–48

    Article  CAS  Google Scholar 

  4. Hofmann K, Falquet L (2001) A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem Sci 26:347–350

    Article  CAS  Google Scholar 

  5. Scheel H, Tomiuk S, Hofmann K (2003) Elucidation of ataxin-3 and ataxin-7 function by integrative bioinformatics. Hum Mol Genet 12:2845–2852

    Article  CAS  Google Scholar 

  6. Burnett B, Li F, Pittman RN (2003) The polyglutamine neurodegenerative protein ataxin-3 binds polyubiquitylated proteins and has ubiquitin protease activity. Hum Mol Genet 12:3195–3205

    Article  CAS  Google Scholar 

  7. Chow MK, Mackay JP, Whisstock JC, Scanlon MJ, Bottomley SP (2004) Structural and functional analysis of the Josephin domain of the polyglutamine protein ataxin-3. Biochem Biophys Res Commun 322:387–394

    Article  CAS  Google Scholar 

  8. Berke SJ, Chai Y, Marrs GL, Wen H, Paulson HL (2005) Defining the role of ubiquitin-interacting motifs in the polyglutamine disease protein, ataxin-3. J Biol Chem 280:32026–32034

    Article  CAS  Google Scholar 

  9. Schmitt I, Linden M, Khazneh H, Evert BO, Breuer P, Klockgether T, Wuellner U (2007) Inactivation of the mouse Atxn3 (ataxin-3) gene increases protein ubiquitination. Biochem Biophys Res Commun 362:734–739

    Article  CAS  Google Scholar 

  10. Winborn BJ, Travis SM, Todi SV, Scaglione KM, Xu P, Williams AJ, Cohen RE, Peng J, Paulson HL (2008) The deubiquitinating enzyme ataxin-3, a polyglutamine disease protein, edits Lys63 linkages in mixed linkage ubiquitin chains. J Biol Chem 283:26436–26443

    Article  CAS  Google Scholar 

  11. Nicastro G, Todi SV, Karaca E, Bonvin AM, Paulson HL, Pastore A (2010) Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxin-3. PLoS ONE 5:e12430

    Article  Google Scholar 

  12. Chai Y, Berke SS, Cohen RE, Paulson HL (2004) Poly-ubiquitin binding by the polyglutamine disease protein ataxin-3 links its normal function to protein surveillance pathways. J Biol Chem 279:3605–3611

    Article  CAS  Google Scholar 

  13. Todi SV, Winborn BJ, Scaglione KM, Blount JR, Travis SM, Paulson HL (2009) Ubiquitination directly enhances activity of the deubiquitinating enzyme ataxin-3. EMBO J 28:372–382

    Article  CAS  Google Scholar 

  14. Matos CA, Nobrega C, Louros SR, Almeida B, Ferreiro E, Valero J, Pereira de Almeida L, Macedo-Ribeiro S, Carvalho AL (2016) Ataxin-3 phosphorylation decreases neuronal defects in spinocerebellar ataxia type 3 models. J Cell Biol 212:465–480

    Article  CAS  Google Scholar 

  15. Mao Y, Senic-Matuglia F, Di Fiore PP, Polo S, Hodsdon ME, De Camilli P (2005) Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain. Proc Natl Acad Sci U S A 102:12700–12705

    Article  CAS  Google Scholar 

  16. Nicastro G, Habeck M, Masino L, Svergun DI, Pastore A (2006) Structure validation of the Josephin domain of ataxin-3: conclusive evidence for an open conformation. J Biomol NMR 36:267–277

    Article  CAS  Google Scholar 

  17. Nicastro G, Menon RP, Masino L, Knowles PP, McDonald NQ, Pastore A (2005) The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition. Proc Natl Acad Sci U S A 102:10493–10498

    Article  CAS  Google Scholar 

  18. Satoh T, Sumiyoshi A, Yagi-Utsumi M, Sakata E, Sasakawa H, Kurimoto E, Yamaguchi Y, Li W, Joazeiro CA, Hirokawa T, Kato K (2014) Mode of substrate recognition by the Josephin domain of ataxin-3, which has an endo-type deubiquitinase activity. FEBS Lett 588:4422–4430

    Article  CAS  Google Scholar 

  19. Nicastro G, Masino L, Esposito V, Menon RP, De Simone A, Fraternali F, Pastore A (2009) Josephin domain of ataxin-3 contains two distinct ubiquitin-binding sites. Biopolymers 91:1203–1214

    Article  CAS  Google Scholar 

  20. Sanfelice D, De Simone A, Cavalli A, Faggiano S, Vendruscolo M, Pastore A (2014) Characterization of the conformational fluctuations in the Josephin domain of ataxin-3. Biophys J 107:2932–2940

    Article  CAS  Google Scholar 

  21. Weeks SD, Grasty KC, Hernandez-Cuebas L, Loll PJ (2011) Crystal structure of a Josephin-ubiquitin complex: evolutionary restraints on ataxin-3 deubiquitinating activity. J Biol Chem 286:4555–4565

    Article  CAS  Google Scholar 

  22. Blount JR, Tsou WL, Ristic G, Burr AA, Ouyang M, Galante H, Scaglione KM, Todi SV (2014) Ubiquitin-binding site 2 of ataxin-3 prevents its proteasomal degradation by interacting with Rad23. Nat Commun 5:4638

    Article  CAS  Google Scholar 

  23. Song AX, Zhou CJ, Peng Y, Gao XC, Zhou ZR, Fu QS, Hong J, Lin DH, Hu HY (2010) Structural transformation of the tandem ubiquitin-interacting motifs in ataxin-3 and their cooperative interactions with ubiquitin chains. PLoS ONE 5:e13202

    Article  Google Scholar 

  24. Macedo-Ribeiro S, Cortes L, Maciel P, Carvalho AL (2009) Nucleocytoplasmic shuttling activity of ataxin-3. PLoS ONE 4:e5834

    Article  Google Scholar 

  25. Zhemkov VA, Kulminskaya AA, Bezprozvanny IB, Kim M (2016) The 2.2-Angstrom resolution crystal structure of the carboxy-terminal region of ataxin-3. FEBS open bio 6:168–178

    Article  CAS  Google Scholar 

  26. Kim M (2013) Beta conformation of polyglutamine track revealed by a crystal structure of Huntingtin N-terminal region with insertion of three histidine residues. Prion 7:221–228

    Article  Google Scholar 

  27. Kim MW, Chelliah Y, Kim SW, Otwinowski Z, Bezprozvanny I (2009) Secondary structure of Huntingtin amino-terminal region. Structure 17:1205–1212

    Article  CAS  Google Scholar 

  28. Chow MK, Ellisdon AM, Cabrita LD, Bottomley SP (2004) Polyglutamine expansion in ataxin-3 does not affect protein stability: implications for misfolding and disease. J Biol Chem 279:47643–47651

    Article  CAS  Google Scholar 

  29. Scarff CA, Almeida B, Fraga J, Macedo-Ribeiro S, Radford SE, Ashcroft AE (2015) Examination of ataxin-3 (atx-3) aggregation by structural mass spectrometry techniques: a rationale for expedited aggregation upon polyglutamine (polyQ) expansion. Mol Cell Proteomics 14:1241–1253

    Article  CAS  Google Scholar 

  30. Santambrogio C, Frana AM, Natalello A, Papaleo E, Regonesi ME, Doglia SM, Tortora P, Invernizzi G, Grandori R (2012) The role of the central flexible region on the aggregation and conformational properties of human ataxin-3. FEBS J 279:451–463

    Article  CAS  Google Scholar 

  31. Scarff CA, Sicorello A, Tomé RJL, Macedo-Ribeiro S, Ashcroft AE, Radford SE (2013) A tale of a tail: structural insights into the conformational properties of the polyglutamine protein ataxin-3. Int J Mass Spectrom 345–347:63–70

    Article  Google Scholar 

  32. Paulson HL, Perez MK, Trottier Y, Trojanowski JQ, Subramony SH, Das SS, Vig P, Mandel JL, Fischbeck KH, Pittman RN (1997) Intranuclear inclusions of expanded polyglutamine protein in spinocerebellar ataxia type 3. Neuron 19:333–344

    Article  CAS  Google Scholar 

  33. Bevivino AE, Loll PJ (2001) An expanded glutamine repeat destabilizes native ataxin-3 structure and mediates formation of parallel β-fibrils. Proc Natl Acad Sci U S A 98:11955–11960

    Article  CAS  Google Scholar 

  34. Fujigasaki H, Uchihara T, Koyano S, Iwabuchi K, Yagishita S, Makifuchi T, Nakamura A, Ishida K, Toru S, Hirai S, Ishikawa K, Tanabe T, Mizusawa H (2000) Ataxin-3 is translocated into the nucleus for the formation of intranuclear inclusions in normal and Machado-Joseph disease brains. Exp Neurol 165:248–256

    Article  CAS  Google Scholar 

  35. Kettner M, Willwohl D, Hubbard GB, Rub U, Dick EJ Jr, Cox AB, Trottier Y, Auburger G, Braak H, Schultz C (2002) Intranuclear aggregation of nonexpanded ataxin-3 in marinesco bodies of the nonhuman primate substantia nigra. Exp Neurol 176:117–121

    Article  CAS  Google Scholar 

  36. Chow MK, Paulson HL, Bottomley SP (2004) Destabilization of a non-pathological variant of ataxin-3 results in fibrillogenesis via a partially folded intermediate: a model for misfolding in polyglutamine disease. J Mol Biol 335:333–341

    Article  CAS  Google Scholar 

  37. Marchal S, Shehi E, Harricane MC, Fusi P, Heitz F, Tortora P, Lange R (2003) Structural instability and fibrillar aggregation of non-expanded human ataxin-3 revealed under high pressure and temperature. J Biol Chem 278:31554–31563

    Article  CAS  Google Scholar 

  38. Masino L, Nicastro G, Menon RP, Dal Piaz F, Calder L, Pastore A (2004) Characterization of the structure and the amyloidogenic properties of the Josephin domain of the polyglutamine-containing protein ataxin-3. J Mol Biol 344:1021–1035

    Article  CAS  Google Scholar 

  39. Shehi E, Fusi P, Secundo F, Pozzuolo S, Bairati A, Tortora P (2003) Temperature-dependent, irreversible formation of amyloid fibrils by a soluble human ataxin-3 carrying a moderately expanded polyglutamine stretch (Q36). Biochemistry 42:14626–14632

    Article  CAS  Google Scholar 

  40. Gales L, Cortes L, Almeida C, Melo CV, Costa MC, Maciel P, Clarke DT, Damas AM, Macedo-Ribeiro S (2005) Towards a structural understanding of the fibrillization pathway in Machado-Joseph’s disease: trapping early oligomers of non-expanded ataxin-3. J Mol Biol 353:642–654

    Article  CAS  Google Scholar 

  41. de Chiara C, Pastore A (2014) Kaleidoscopic protein-protein interactions in the life and death of ataxin-1: new strategies against protein aggregation. Trends Neurosci 37:211–218

    Article  Google Scholar 

  42. Eftekharzadeh B, Piai A, Chiesa G, Mungianu D, Garcia J, Pierattelli R, Felli IC, Salvatella X (2016) Sequence context influences the structure and aggregation behavior of a PolyQ tract. Biophys J 110:2361–2366

    Article  CAS  Google Scholar 

  43. Menon RP, Soong D, de Chiara C, Holt M, McCormick JE, Anilkumar N, Pastore A (2014) Mapping the self-association domains of ataxin-1: identification of novel non overlapping motifs. PeerJ 2:e323

    Article  Google Scholar 

  44. Monsellier E, Redeker V, Ruiz-Arlandis G, Bousset L, Melki R (2015) Molecular interaction between the chaperone Hsc70 and the N-terminal flank of huntingtin exon 1 modulates aggregation. J Biol Chem 290:2560–2576

    Article  CAS  Google Scholar 

  45. Masino L, Nicastro G, De Simone A, Calder L, Molloy J, Pastore A (2011) The Josephin domain determines the morphological and mechanical properties of ataxin-3 fibrils. Biophys J 100:2033–2042

    Article  CAS  Google Scholar 

  46. Ellisdon AM, Pearce MC, Bottomley SP (2007) Mechanisms of ataxin-3 misfolding and fibril formation: kinetic analysis of a disease-associated polyglutamine protein. J Mol Biol 368:595–605

    Article  CAS  Google Scholar 

  47. Ellisdon AM, Thomas B, Bottomley SP (2006) The two-stage pathway of ataxin-3 fibrillogenesis involves a polyglutamine-independent step. J Biol Chem 281:16888–16896

    Article  CAS  Google Scholar 

  48. Kayed R, Head E, Thompson JL, McIntire TM, Milton SC, Cotman CW, Glabe CG (2003) Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis. Science 300:486–489

    Article  CAS  Google Scholar 

  49. Lupton CJ, Steer DL, Wintrode PL, Bottomley SP, Hughes VA, Ellisdon AM (2015) Enhanced molecular mobility of ordinarily structured regions drives polyglutamine disease. J Biol Chem 290:24190–24200

    Article  CAS  Google Scholar 

  50. Natalello A, Frana AM, Relini A, Apicella A, Invernizzi G, Casari C, Gliozzi A, Doglia SM, Tortora P, Regonesi ME (2011) A major role for side-chain polyglutamine hydrogen bonding in irreversible ataxin-3 aggregation. PLoS ONE 6:e18789

    Article  CAS  Google Scholar 

  51. Masino L, Nicastro G, Calder L, Vendruscolo M, Pastore A (2011) Functional interactions as a survival strategy against abnormal aggregation. FASEB J 25:45–54

    Article  CAS  Google Scholar 

  52. Robertson AL, Headey SJ, Saunders HM, Ecroyd H, Scanlon MJ, Carver JA, Bottomley SP (2010) Small heat-shock proteins interact with a flanking domain to suppress polyglutamine aggregation. Proc Natl Acad Sci U S A 107:10424–10429

    Article  CAS  Google Scholar 

  53. Almeida B, Fernandes S, Abreu IA, Macedo-Ribeiro S (2013) Trinucleotide repeats: a structural perspective. Front Neurol 4:76

    PubMed  PubMed Central  Google Scholar 

  54. Kristensen LV, Oppermann FS, Rauen MJ, Hartmann-Petersen R, Thirstrup K (2017) Polyglutamine expansion of ataxin-3 alters its degree of ubiquitination and phosphorylation at specific sites. Neurochemistry International (in press)

    Google Scholar 

  55. Fei E, Jia N, Zhang T, Ma X, Wang H, Liu C, Zhang W, Ding L, Nukina N, Wang G (2007) Phosphorylation of ataxin-3 by glycogen synthase kinase 3β at serine 256 regulates the aggregation of ataxin-3. Biochem Biophys Res Commun 357:487–492

    Article  CAS  Google Scholar 

  56. Mueller T, Breuer P, Schmitt I, Walter J, Evert BO, Wullner U (2009) CK2-dependent phosphorylation determines cellular localization and stability of ataxin-3. Hum Mol Genet 18:3334–3343

    Article  CAS  Google Scholar 

  57. Tao RS, Fei EK, Ying Z, Wang HF, Wang GH (2008) Casein kinase 2 interacts with and phosphorylates ataxin-3. Neurosci Bull 24:271–277

    Article  CAS  Google Scholar 

  58. Todi SV, Scaglione KM, Blount JR, Basrur V, Conlon KP, Pastore A, Elenitoba-Johnson K, Paulson HL (2010) Activity and cellular functions of the deubiquitinating enzyme and polyglutamine disease protein ataxin-3 are regulated by ubiquitination at lysine 117. J Biol Chem 285:39303–39313

    Article  CAS  Google Scholar 

  59. Faggiano S, Menon RP, Kelly GP, Todi SV, Scaglione KM, Konarev PV, Svergun DI, Paulson HL, Pastore A (2015) Allosteric regulation of deubiquitylase activity through ubiquitination. Front Mol Biosci 2:2

    Article  Google Scholar 

  60. Jana NR, Dikshit P, Goswami A, Kotliarova S, Murata S, Tanaka K, Nukina N (2005) Co-chaperone CHIP associates with expanded polyglutamine protein and promotes their degradation by proteasomes. J Biol Chem 280:11635–11640

    Article  CAS  Google Scholar 

  61. Matsumoto M, Yada M, Hatakeyama S, Ishimoto H, Tanimura T, Tsuji S, Kakizuka A, Kitagawa M, Nakayama KI (2004) Molecular clearance of ataxin-3 is regulated by a mammalian E4. EMBO J 23:659–669

    Article  CAS  Google Scholar 

  62. Miller VM, Nelson RF, Gouvion CM, Williams A, Rodriguez-Lebron E, Harper SQ, Davidson BL, Rebagliati MR, Paulson HL (2005) CHIP suppresses polyglutamine aggregation and toxicity in vitro and in vivo. Journal Neurosci Official J Soc Neurosci 25:9152–9161

    Article  CAS  Google Scholar 

  63. Tsou WL, Burr AA, Ouyang M, Blount JR, Scaglione KM, Todi SV (2013) Ubiquitination regulates the neuroprotective function of the deubiquitinase ataxin-3 in vivo. J Biol Chem 288:34460–34469

    Article  CAS  Google Scholar 

  64. Almeida B, Abreu IA, Matos CA, Fraga JS, Fernandes S, Macedo MG, Gutierrez-Gallego R, Pereira PJ, Carvalho AL, Macedo-Ribeiro S (2015) SUMOylation of the brain-predominant ataxin-3 isoform modulates its interaction with p97. Biochem Biophys Acta 1852:1950–1959

    CAS  PubMed  Google Scholar 

  65. Zhou YF, Liao SS, Luo YY, Tang JG, Wang JL, Lei LF, Chi JW, Du J, Jiang H, Xia K, Tang BS, Shen L (2013) SUMO-1 modification on K166 of polyQ-expanded ataxin-3 strengthens its stability and increases its cytotoxicity. PLoS ONE 8:e54214

    Article  CAS  Google Scholar 

  66. Wang Q, Li L, Ye Y (2006) Regulation of retrotranslocation by p97-associated deubiquitinating enzyme ataxin-3. J Cell Biol 174:963–971

    Article  CAS  Google Scholar 

  67. Zhong X, Pittman RN (2006) Ataxin-3 binds VCP/p97 and regulates retrotranslocation of ERAD substrates. Hum Mol Genet 15:2409–2420

    Article  CAS  Google Scholar 

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Funding

SM-R lab is funded by (i) National Ataxia Foundation, USA, by (ii) FEDER—Fundo Europeu de Desenvolvimento Regional funds through the COMPETE 2020—Operacional Programme for Competitiveness and Internationalisation (POCI), Portugal 2020, and by Portuguese funds through FCT—Fundação para a Ciência e a Tecnologia/Ministério da Ciência, Tecnologia e Ensino Superior in the framework of the project “Institute for Research and Innovation in Health Sciences” (POCI-01-0145-FEDER-007274), and by (iii) Project Norte-01-0145-FEDER-000008—Porto Neurosciences and Neurologic Disease Research Initiative at I3S, supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER). ALC lab is funded by (1) the Brain and Behavior Research Foundation, (2) Fondation Lejeune, and (3) the European Regional Development Fund (ERDF), through the Centro 2020 Regional Operational Programme under project CENTRO-01-0145-FEDER-000008:BrainHealth 2020, and through the COMPETE 2020—Operational Programme for Competitiveness and Internationalisation and Portuguese national funds via FCT—Fundação para a Ciência e a Tecnologia, I.P., under project POCI-01-0145-FEDER-007440.

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Carvalho, A.L., Silva, A., Macedo-Ribeiro, S. (2018). Polyglutamine-Independent Features in Ataxin-3 Aggregation and Pathogenesis of Machado-Joseph Disease. In: Nóbrega, C., Pereira de Almeida, L. (eds) Polyglutamine Disorders. Advances in Experimental Medicine and Biology, vol 1049. Springer, Cham. https://doi.org/10.1007/978-3-319-71779-1_14

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