Abstract
Previous reviews of coral reef biogeochemistry are briefly summarized, as well as biogeochemical reactions and C:N:P pool sizes of water, biota, and sediments. Ranges of gross and net productivity are given for characteristic reef habitats. Rates of nutrient uptake and release are also presented, and a generalized kinetic approach to reef biogeochemistry using mass transfer theory is considered. The implication of mass transfer limitation of biogeochemical reactions is discussed in the wider context of how reefs function. It is important to take a unified approach in normalizing biogeochemical rates so that the quantification of all biogeochemical reactions can be achieved, and a more global understanding of the limits and constraints of coral reef processes and metabolism.
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References
Andrefouet S, Payri C (2000) Scaling-up carbon and carbonate metabolism of coral reefs using in-situ data and remote sensing. Coral Reefs 19:259–269
Atkinson MJ (1987a) Low phosphorus sediments in a hypersaline marine bay. Estuar Coast Shelf Sci 24:335–348
Atkinson MJ (1987b) Rates of phosphate uptake by coral reef flat communities. Limnol Oceanogr 32:426–435
Atkinson MJ, Bilger RW (1992) Effect of water velocity on phosphate uptake in coral reef-flat communities. Limnol Oceanogr 37:273–279
Atkinson MJ, Falter JL (2003) Coral Reefs. In: Black K, Shimmield G (eds) Biogeochemistry of marine systems. CRC Press, Boca Raton pp 40–64
Atkinson MJ, Smith SV (1983) C:N:P ratios of benthic marine plants. Limnol Oceanogr 28:568–574
Atkinson MJ, Smith DF (1987) Slow uptake of 32P over a barrier reef flat. Limnol Oceanogr 32:436–441
Atkinson MJ, Falter JL, Hearn CJ (2001) Nutrient dynamics in the biosphere 2 coral reef mesocosm: water velocity controls NH4 and PO4 uptake. Coral Reefs 20:341–346
Bilger RW, Atkinson MJ (1992) Anomalous mass transfer of phosphate on coral reef flats. Limnol Oceanogr 37:261–272
Bilger RW, Atkinson MJ (1995) Effects of nutrient loading on mass-transfer rates to a coralreef community. Limnol Oceanogr 40:279–289
Boucher GJ, Clavier CH, Gattuso JP (1998) Contributions of soft-bottoms to the community metabolism (primary production and calcification) of a barrier reef flat (Moorea, French Polynesia). J Exp Mar Biol Ecol 225:269–283
Buddemeier RW, Oberdorfer JA (1988) Hydrogeology and hydrodynamics of coral reef pore waters. Proc Sixth Int Coral Reef Symp 2:485–490
Crossland CJ (1983) Dissolved nutrients in coral reef waters. In: Barnes DJ (ed) Perspectives in coral reefs. Australian institute of marine science, Brian Couston Publishers, Manuka, pp 56–68
D’Elia C, Wiebe W (1990) Biogeochemical nutrient cycles in coral reef ecosystems. In: Dubinsky Z (ed) Coral reefs: ecosystems of the world series, vol 25. Elsevier Science, Amsterdam, pp 49–74
Entsch B, Boto KG, Sim RG, Wellington JT (1983) Phosphorus and nitrogen in coral reef sediments. Limnol Oceanogr 28:465–476
Falter JL (2002) Mass transfer limits to nutrient uptake by shallow coral reef communities. Ph.D. dissertation, University of Hawaii, Hondulu, 126 pp
Falter JL, Atkinson MJ, Langdon C (2001) Production-respiration relationships at different time- scales within the Biosphere 2 coral reef biome. Limnol Oceanogr 46:1653–1660
Falter JL, Atkinson MJ, Merrifield MA (2004) Mass-transfer limitation of nutrient uptake by a wave-dominated reef flat community. Limnol Oceanogr 49:1820–1831
Falter JL, Atkinson MJ, Lowe RJ, Monismith SG, Koseff JR (2007) Effects of non-local turbulence on the mass transfer of dissolved species to model coral reefs. Limnol Oceanogr 52:274–285
Falter, Atkinson, Schar DW, Lowe, Monismith (2010) Short-term coherency between gross primary production and community respiration in an algal-dominated reef flat. Coral Reefs. doi 10.1007/s0038-010-0671-9
Gattuso JP, Pinchon M, Delasalle B, Frankignoulle M (1993) Community metabolism and air- sea CO2 fluxes in a coral reef ecosystem (Moorea, French Polynesia). Mar Ecol Prog Ser 96:259–267
Gattuso JP, Pinchon M, Delesalle B, Canon C, Frankignoulle M (1996) Carbon fluxes in coral reefs. I. Lagrangian measurement of community metabolism and resulting air-sea CO2 disequilibrium. Mar Ecol Prog Ser 145:109–121
Hochberg EJ, Atkinson MJ (2008) Coral reef benthic productivity based on optical absorptance and light-use efficiency. Coral Reefs 27:49–59
Kinsey DW (1985) Metabolism, calcification, and carbon production: I. Systems level studies. Proc 5th Int Coral Reef Congr 4:505–526
Koop K, Booth D, Broadbents A, Brodie J et al (2001) ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions. Mar Pollut Bull 42:91–120
Kraines S, Suzuki Y, Yamada K, Komiyama H (1996) Separating biological and physical changes in dissolved oxygen concentration in a coral reef. Limnol Oceanogr 41:1790–1799
Kraines S, Suzuki Y, Omori T, Shitashima K, Kanahara S, Komiyama H (1997) Carbonate dynamics of the coral reef system at Bora Bay, Miyako Island. Mar Ecol Prog Ser 156:1–16
Larned ST, Atkinson MJ (1997) Effects of water velocity on NH4 and PO4 uptake and nutrient-limited growth in the macroalgae Dictyosphaeria cavernosa. Mar Ecol Prog Ser 157:295–302
Lowe RJ, Falter JL, Koseff JR, Monismith SG, Atkinson MJ (2007) Spectral wave flow attenuation within submerged canopies: implications for wave energy dissipation. J Geophys Res 112:C05018. doi:10.1029/2006JC003605
Miyajima T, Tanaka Y, Koike I, Yamano H, Kayanne H (2007) Evaluation of spatial correlation between nutrient exchange rates and benthic biota in a reef-flat ecosystem by GIS-assisted flow-tracking. J Oceanogr 63(4):643–659
Odum HT, Odum EP (1955) Trophic structure and productivity of a windward coral reef community on Eniwetok Atoll. Ecol Monogr 25:1415–1444
Pilson MEQ, Betzer SB (1973) Phosphorus flux across a coral reef. Ecology 54:1459–1466
Pomeroy LR, Kuenzler EJ (1969) Phosphorus turnover by coral reef animals. Symp Radio-ecol, AEC TID 4500(3):474–482
Steven ADL, Atkinson MJ (2003) Nutrient uptake by coral-reef microatolls. Coral Reefs 22:197–204
Suzumura M, Miyajima T, Hata H, Umezuwa Y, Kayanne H, Koike I (2002) Cycling of phosphorus maintains the production of microphytobenthic communities in carbonate sediments of a coral reef. Limnol Oceanogr 47:771–781
Szmant A (2002) Nutrient Enrichment on coral reefs: is it a major cause of coral reef decline? Estuaries 25(4):743–766
Szmant A, Forrester A (1996) Water column and sediment nitrogen and phosphorus distribution patterns in the Florida Keys, USA. Coral Reefs 15:21–41
Thomas FIM, Atkinson MJ (1997) Ammonium uptake by coral reefs: effects of water velocity and surface roughness on mass transfer. Limnol Oceanogr 42:81–88
Tribble GW, Sansone FJ, Smith SV (1990) Stoichiometric modeling of carbon diagenesis within a coral reef framework. Geochim Cosmochim Acta 54:2439–2449
Yahel G, Sharp JH, Marie D, Hase C, Genin A (2003) In-situ feeding and element removal in the symbiotic-bearing sponge Theonella swinhoei: Bulk DOC is the major source for carbon. Limnol Oceanogr 48(1):141–149
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Atkinson, M.J. (2011). Biogeochemistry of Nutrients. In: Dubinsky, Z., Stambler, N. (eds) Coral Reefs: An Ecosystem in Transition. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-0114-4_13
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DOI: https://doi.org/10.1007/978-94-007-0114-4_13
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