Skip to main content

Expression and Purification of Recombinant Vigna unguiculata Phospholipase D in Pichia pastoris for Structural Studies

  • Protocol
  • First Online:
Lipases and Phospholipases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1835))

Abstract

The production of pure enzymes in high quantities is a proven strategy to study the catalytic mechanism as well as the solving of structure at the atomic scale for therapeutic or industrial purposes. Phospholipase D (PLD, EC 3.1.4.4) is found in a wide majority of living organisms and has been shown to be involved in signal transduction, vesicle trafficking, and membrane metabolism processes. Located at the membrane-cytoplasm interface, plant PLDs are soluble but also bear an evident hydrophobic aspect making challenging its expression and its purification in large quantity. So far there is no high-resolution three-dimensional structure for a eukaryotic PLD. The protocols herein describe the cloning of the eukaryotic recombinant PLDα of Vigna unguiculata (cowpea) into the yeast expression system Pichia pastoris and its two-step purification process. This allowed us to purify to homogeneity hundreds of micrograms of highly pure protein to conduct in fine structural studies.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Jenkins GM, Frohman MA (2005) Phospholipase D: a lipid centric review. Cell Mol Life Sci 62(19-20):2305–2316. https://doi.org/10.1007/s00018-005-5195-z

    Article  PubMed  CAS  Google Scholar 

  2. Selvy PE, Lavieri RR, Lindsley CW, Brown HA (2011) Phospholipase D: enzymology, functionality, and chemical modulation. Chem Rev 111(10):6064–6119. https://doi.org/10.1021/cr200296t

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  3. Ulbrich-Hofmann R, Lerchner A, Oblozinsky M, Bezakova L (2005) Phospholipase D and its application in biocatalysis. Biotechnol Lett 27(8):535–544. https://doi.org/10.1007/s10529-005-3251-2

    Article  PubMed  CAS  Google Scholar 

  4. Zheng L, Krishnamoorthi R, Zolkiewski M, Wang X (2000) Distinct Ca2+ binding properties of novel C2 domains of plant phospholipase dalpha and beta. J Biol Chem 275(26):19700–19706. https://doi.org/10.1074/jbc.M001945200

    Article  PubMed  CAS  Google Scholar 

  5. Zheng L, Shan J, Krishnamoorthi R, Wang X (2002) Activation of plant phospholipase Dbeta by phosphatidylinositol 4,5-bisphosphate: characterization of binding site and mode of action. Biochemistry 41(14):4546–4553

    Article  CAS  PubMed  Google Scholar 

  6. Hanahan DJ, Chaikoff IL (1947) The phosphorus-containing lipides of the carrot. J Biol Chem 168(1):233–240

    PubMed  CAS  Google Scholar 

  7. Abousalham A, Riviere M, Teissere M, Verger R (1993) Improved purification and biochemical characterization of phospholipase D from cabbage. Biochim Biophys Acta 1158(1):1–7. https://doi.org/10.1016/0304-4165(93)90088

    Article  PubMed  CAS  Google Scholar 

  8. Wang X, Dyer JH, Zheng L (1993) Purification and immunological analysis of phospholipase D from castor bean endosperm. Arch Biochem Biophys 306(2):486–494

    Article  CAS  PubMed  Google Scholar 

  9. Abousalham A, Teissere M, Gardies AM, Verger R, Noat G (1995) Phospholipase D from soybean (Glycine max L.) suspension-cultured cells: purification, structural and enzymatic properties. Plant Cell Physiol 36(6):989–996

    Article  CAS  PubMed  Google Scholar 

  10. Abdelkafi S, Abousalham A (2011) Kinetic study of sunflower phospholipase Dalpha: interactions with micellar substrate, detergents and metals. Plant Physiol Biochem 49(7):752–757. https://doi.org/10.1016/j.plaphy.2011.02.002

    Article  PubMed  CAS  Google Scholar 

  11. Khatoon H, Mansfeld J, Schierhorn A, Ulbrich-Hofmann R (2015) Purification, sequencing and characterization of phospholipase D from Indian mustard seeds. Phytochemistry 117:65–75. https://doi.org/10.1016/j.phytochem.2015.05.022

    Article  PubMed  CAS  Google Scholar 

  12. Zhao J, Wang X (2004) Arabidopsis phospholipase Dalpha1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors. J Biol Chem 279(3):1794–1800. https://doi.org/10.1074/jbc.M309529200

    Article  PubMed  CAS  Google Scholar 

  13. Wang X, Xu L, Zheng L (1994) Cloning and expression of phosphatidylcholine-hydrolyzing phospholipase D from Ricinus communis L. J Biol Chem 269(32):20312–20317

    PubMed  CAS  Google Scholar 

  14. Ueki J, Morioka S, Komari T, Kumashiro T (1995) Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.). Plant Cell Physiol 36(5):903–914

    Article  CAS  PubMed  Google Scholar 

  15. Schäffner I, Rücknagel K-P, Mansfeld J, Ulbrich-Hofmann R (2002) Genomic structure, cloning and expression of two phospholipase D isoenzymes from white cabbage. Eur J Lipid Sci Technol 104(2):79–87

    Article  Google Scholar 

  16. Dyer JH, Zheng L, Wang X (1995) Cloning and nucleotide sequence of a cDNA encoding phospholipase D from arabidopsis. Plant Physiol 109:1497

    Article  Google Scholar 

  17. El Maarouf H, Carriere F, Riviere M, Abousalham A (2000) Functional expression in insect cells, one-step purification and characterization of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp). Protein Eng 13(11):811–817

    Article  PubMed  Google Scholar 

  18. Ben Ali Y, Carriere F, Abousalham A (2007) High-level constitutive expression in Pichia pastoris and one-step purification of phospholipase D from cowpea (Vigna unguiculata L. Walp). Protein Expr Purif 51(2):162–169. https://doi.org/10.1016/j.pep.2006.07.018

    Article  PubMed  CAS  Google Scholar 

  19. Rahier R, Noiriel A, Abousalham A (2016) Functional characterization of the N-terminal C2 domain from Arabidopsis thaliana phospholipase Dalpha and Dbeta. Biomed Res Int 2016:2721719. https://doi.org/10.1155/2016/2721719

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  20. Lambrecht R, Ulbrich-Hofmann R (1992) A facile purification procedure of phospholipase D from cabbage and its characterization. Biol Chem Hoppe Seyler 373(2):81–88

    Article  CAS  PubMed  Google Scholar 

  21. Leiros I, Secundo F, Zambonelli C, Servi S, Hough E (2000) The first crystal structure of a phospholipase D. Structure 8(6):655–667

    Article  CAS  PubMed  Google Scholar 

  22. Ponting CP, Kerr ID (1996) A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Sci 5(5):914–922. https://doi.org/10.1002/pro.5560050513

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  23. Ullah A, de Giuseppe PO, Murakami MT, Trevisan-Silva D, Wille AC, Chaves-Moreira D, Gremski LH, da Silveira RB, Sennf-Ribeiro A, Chaim OM, Veiga SS, Arni RK (2011) Crystallization and preliminary X-ray diffraction analysis of a class II phospholipase D from Loxosceles intermedia venom. Acta Crystallogr Sect F Struct Biol Cryst Commun 67(Pt 2):234–236. https://doi.org/10.1107/S1744309110050931

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  24. Abergel C, Abousalham A, Chenivesse S, Riviere M, Moustacas-Gardies AM, Verger R (2001) Crystallization and preliminary crystallographic study of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp). Acta Crystallogr D Biol Crystallogr 57(Pt 2):320–322

    Article  CAS  PubMed  Google Scholar 

  25. Stumpe S, Konig S, Ulbrich-Hofmann R (2007) Insights into the structure of plant alpha-type phospholipase D. FEBS J 274(10):2630–2640. https://doi.org/10.1111/j.1742-4658.2007.05798.x

    Article  PubMed  CAS  Google Scholar 

  26. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  CAS  Google Scholar 

  27. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227(5259):680–685

    Article  CAS  Google Scholar 

  28. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd. edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  29. Takrama JF, Taylor KE (1991) A continuous spectrophotometric method for monitoring phospholipase D-catalyzed reactions of physiological substrates. J Biochem Biophys Methods 23(3):217–226

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

The French “Ministère de l’Enseignement supérieur et de la Recherche” is gratefully acknowledged for the funding of Yani Arhab and Renaud Rahier.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Abdelkarim Abousalham .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Arhab, Y., Rahier, R., Noiriel, A., Cherrier, M.V., Abousalham, A. (2018). Expression and Purification of Recombinant Vigna unguiculata Phospholipase D in Pichia pastoris for Structural Studies. In: Sandoval, G. (eds) Lipases and Phospholipases. Methods in Molecular Biology, vol 1835. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8672-9_10

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-8672-9_10

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8671-2

  • Online ISBN: 978-1-4939-8672-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics