Skip to main content

Prenatal Detection of Chromosome Aneuploidy by Quantitative Fluorescence PCR

  • Protocol
Prenatal Diagnosis

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 444))

Summary

Autosomal chromosome aneuploid pregnancies that survive to term, namely, trisomies 13, 18, and 21, account for 89% of chromosome abnormalities with a severe phenotype. They are normally detected by full karyotype analysis of cultured cells. The average reporting time for a prenatal karyotype analysis is approximately 14 days, and in recent years, there has been increasing demand for more rapid prenatal results with respect to the common chromosome aneuploidies, to relieve maternal anxiety and facilitate options in pregnancy. The rapid tests that have been developed negate the requirement for cultured cells, instead directly testing cells from the amniotic fluid or chorionic villus sample, with the aim of generating results within 48 h of sample receipt. Interphase fluorescence in situ hybridization is the method of choice in some genetic laboratories, usually because the expertise and equipment are readily available. However, a quantitative fluorescence (QF)-PCR--based approach is more suited to a high-throughput diagnostic service. This approach has been investigated in a small number of pilot studies and reported as a clinical diagnostic service in many studies. It may be used as a stand-alone test or as an adjunct test to full karyotype analysis, which subsequently confirms the rapid result and scans for other chromosome abnormalities not detected by the QF-PCR assay.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Lewin, P., Kleinfinger, P., Bazin, A., Mossafa, H., and Szpiro-Tapia, S. (2000) Defining the efficiency of fluorescence in situ hybridization on uncultured amniocytes on a retrospective cohort of 27 407 prenatal diagnoses. Prenat. Diagn. 20, 1–6.

    Article  CAS  PubMed  Google Scholar 

  2. Waters, J. J. and Waters, K. s. (1999) Trends in cytogenetic prenatal diagnosis in the UK: results from UKNEQAS external audit, 1987–1998. Prenat. Diagn. 19, 1023–1026.

    Article  CAS  PubMed  Google Scholar 

  3. Spathas, D. H., Divane, A., Maniatis, G. M., Ferguson-Smith, M. E., and Ferguson-Smith M. A. (1984) Prenatal detection of trisomy 21 in uncultured amniocytes by fluorescence in situ hybridisation: a prospective study. Prenat. Diagn. 14, 1049–1054.

    Article  Google Scholar 

  4. Klinger, K., Landes, G., Shook, D., et al. (1992) Rapid detection of chromosomal aneuploidies in uncultured amniocytes by using fluorescence in-situ hybridization (FISH). Am. J. Hum. Genet. 51, 55–65.

    CAS  PubMed  Google Scholar 

  5. Pertl, B., Yau, s. C., Sherlock, J., Davies, A. F., Mathew, C. G., and Adinolfi, M. (1994) Rapid molecular method for prenatal detection of Down’s syndrome. Lancet 343, 1197–1198.

    Article  CAS  PubMed  Google Scholar 

  6. Pertl, B., Kopp, s., Kroisel, P. M., Häusler, M., et al. (1997) Quantitative fluorescence polymerase chain reaction for the rapid prenatal detection of common aneuploidies and fetal sex. Am. J. Obstet. Gynecol. 177, 899–906.

    Article  CAS  PubMed  Google Scholar 

  7. Verma, L., Macdonald, F., Leedham, P., McConachie, M., Dhanjal, s., and Hulten, M. (1998) Rapid and simple prenatal DNA diagnosis of Down’s syndrome. Lancet 352, 9–12.

    Article  CAS  PubMed  Google Scholar 

  8. Pertl, B., Kopp, s., Kroisel, P. M., Tului, L., Brambati, B., and Adinolfi, M. (1999) Rapid detection of chromosome aneuploidies by quantitative fluorescence PCR: first application on 247 chorionic villus samples. J. Med. Genet. 36,300–303.

    Google Scholar 

  9. Schmidt, W., Jenderny, J., Hecher, K., et al. (2000) Detection of aneuploidy in chromosome X, Y, 13, 18 and 21 by QF-PCR in 662 selected pregnancies at risk. Mol. Hum. Reprod. 6, 855–860.

    Article  CAS  PubMed  Google Scholar 

  10. Levett, L. J., Liddle, s., and Meredith, R. (2001) A large-scale evaluation of amnio-PCR for the rapid prenatal diagnosis of fetal trisomy. Ultrasound. Obstet. Gynecol. 17, 115–118.

    Article  CAS  PubMed  Google Scholar 

  11. Mann, K., Fox, s. P., Abbs, s. J., et al. (2001) Development and implementation of a new rapid aneuploidy diagnostic service within the UK National Health Service and implications for the future of prenatal diagnosis. Lancet. 358,1057–1061.

    Google Scholar 

  12. Mann, K., Donaghue, C., Fox, s. P., Docherty, Z., and Ogilvie, C. M. (2004) Strategies for the rapid prenatal diagnosis of chromosome aneuploidy. Eur. J. Hum. Genet. 12, 907–915.

    Article  CAS  PubMed  Google Scholar 

  13. Cirigliano, V., Voglino, G., Canadas, M. P., et al. (2004) Rapid prenatal diagnosis of common chromosome aneuploidies by QF-PCR. Assessment on 18,000 consecutive clinical samples. Mol. Hum. Reprod. 10, 839–846.

    Article  CAS  PubMed  Google Scholar 

  14. Ogilvie, C. M., Donaghue, C., Fox, s. P., Docherty, Z., and Mann, K. (2005) Rapid prenatal diagnosis of aneuploidy using quantitative fluorescence-PCR (QF-PCR) J. Histochem. Cytochem . 53, 285–288.

    Article  CAS  Google Scholar 

  15. Lubin, M. B., Elashoff, J. D., Wang, s.-J., Rotter, J. I., and Toyoda, H. (1991) Precise gene dosage determination by polymerase chain reaction: theory, methodology, and statistical approach. Mol. Cell. Probes 5, 307–317.

    Article  CAS  PubMed  Google Scholar 

  16. Donaghue, C., Roberts, A., Mann, K., and Ogilvie, C. M. (2003) Development and targeted application of a rapid QF-PCR test for sex chromosome imbalance. Prenat. Diagn. 3, 201–210.

    Article  Google Scholar 

  17. Stojilkovic-Mikic, T., Mann, K., Docherty, Z., and Ogilvie, M. C. (2005) Maternal cell contamination of prenatal samples assessed by QF-PCR genotyping. Prenat. Diagn. 25, 79–83.

    Article  PubMed  Google Scholar 

  18. Donaghue, C., Mann, K., Docherty, Z. and Ogilvie, C. M. (2005) Detection of mosaicism for primary trisomies in prenatal samples by QF-PCR and karyotype analysis. Prenat.Diagn. 25, 65–72.

    Article  CAS  PubMed  Google Scholar 

  19. Waters, J. J., Walsh, s., Levett, L. J., Liddle, s. and Akinfenwa, Y. (2006) Complete discrepancy between abnormal fetal karyotypes predicted by QF-PCR rapid testing and karyotyped cultured cells in a first-trimester CVS. Prenat. Diagn. 26, 892–897.

    Article  PubMed  Google Scholar 

  20. Waters, J. J., Mann, K., Grimsley, L., et al. Complete discrepancy between QF-PCR analysis of uncultured villi and karyotyping of cultured cells in the prenatal diagnosis of trisomy 21 in three CVS. Prenat Diagn. 2007 Apr; 27(4): 332–339.

    Google Scholar 

  21. Gardner, R. J. M. and Sutherland, G. R. (1996) Chromosome Abnormalities and Genetic Counseling, Oxford University Press, Oxford, UK, pp. 336–355.

    Google Scholar 

  22. Mann, K., Kabba, M., Donaghue, C., Hills, A., and Ogilvie, C. M. Analysis of a chromosomally mosaic placenta to assess the cell populations in dissociated chorionic villi: implications for QF-PCR aneuploidy testing. Prenat Diagn. 2007 Mar; 27(3): 287–289. No abstract available.

    Google Scholar 

  23. Sharp, A. J., Locke, D. P., McGrath, s. D., et al. (2005) Segmental duplications and copy-number variation in the human genome. Am. J. Hum. Genet. 77, 78–88.

    Article  CAS  PubMed  Google Scholar 

  24. Andrew, s. E., Whiteside, D., Buzin, C., Greenberg, C., and Spriggs, E. (2002) An intronic polymorphism of the hMLH1 gene contributes toward incomplete genetic testing for HNPCC. Genet. Test . 6, 319–322.

    Article  CAS  PubMed  Google Scholar 

  25. Mann, K., Donaghue, C., and Ogilvie, C. M. (2003) In vivo somatic microsatellite mutations identified in non-malignant human tissue. Hum.Genet. 114, 110–114.

    Article  CAS  PubMed  Google Scholar 

  26. Clark, J. M. (1988) Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases. Nucleic Acids Res. 16, 9677–9686.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2008 Humana Press, a part of Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Mann, K., Petek, E., Pertl, B. (2008). Prenatal Detection of Chromosome Aneuploidy by Quantitative Fluorescence PCR. In: Hahn, S., Jackson, L.G. (eds) Prenatal Diagnosis. Methods in Molecular Biology™, vol 444. Humana Press. https://doi.org/10.1007/978-1-59745-066-9_6

Download citation

  • DOI: https://doi.org/10.1007/978-1-59745-066-9_6

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-803-4

  • Online ISBN: 978-1-59745-066-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics