Abstract
Carbohydrate Structure Database (CSDB) is a regularly updated database on structures, taxonomy, bibliography, NMR spectra, and other data published for prokaryotic, plant, and fungal carbohydrates and their derivatives, including those containing noncarbohydrate moieties. Key features of this project are high data quality and aiming at full coverage. CSDB has multiple services, such as NMR prediction, NMR-based structure ranking, and tools for statistical analysis. It is freely available at http://csdb.glycoscience.ru.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Aoki-Kinoshita KF, Bolleman J, Campbell MP et al (2013) Introducing glycomics data into the semantic web. J Biomed Semant 4:39
Ceroni A, Dell A, Haslam SM (2007) The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures. Source Code Biol Med 2:3–15
Egorova KS, Toukach PV (2012) Critical analysis of CCSD data quality. J Chem Inf Model 52:2812–2814
Egorova KS, Toukach PV (2014) Expansion of coverage of carbohydrate structure database (CSDB). Carbohydr Res 389:112–114
Toukach PV (2011) Bacterial carbohydrate structure database 3: principles and realization. J Chem Inf Model 51:159–170
Toukach FV, Ananikov VP (2013) Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations. Chem Soc Rev 42:8376–8415
Toukach FV, Knirel YA (2005) New database of bacterial carbohydrate structures. Glycoconj J 22:216–217
Toukach FV, Shashkov AS (2001) Computer-assisted structural analysis of regular glycopolymers on the basis of13C NMR data. Carbohydr Res 335:101–114
Acknowledgments
CSDB was funded by grants from the International Science and Technology Center (#1197p), Russian Foundation for Basic Research (#05-07-90099 and #12-04-00324), and Russian Federation President program (# MK-1700.2005.4). A part of data came from the CarbBank database (University of Georgia, Athens, USA). Authors thank Prof. Y.A. Knirel for support of the bacterial CSDB.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2015 Springer Japan
About this entry
Cite this entry
Toukach, P., Egorova, K. (2015). Bacterial, Plant, and Fungal Carbohydrate Structure Database (CSDB). In: Taniguchi, N., Endo, T., Hart, G., Seeberger, P., Wong, CH. (eds) Glycoscience: Biology and Medicine. Springer, Tokyo. https://doi.org/10.1007/978-4-431-54841-6_24
Download citation
DOI: https://doi.org/10.1007/978-4-431-54841-6_24
Received:
Accepted:
Published:
Publisher Name: Springer, Tokyo
Print ISBN: 978-4-431-54840-9
Online ISBN: 978-4-431-54841-6
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences