Abstract
The purpose of the study was to assess the relationship between polymorphisms of the SCD5 and MMP1 gene and hepatocellular carcinoma (HCC). The gene polymorphisms with a minor allele frequency (MAF) > 0.05 were selected eight SNPs (rs6840, rs1065403, rs3821974, and rs3733230 in 3ʹ-UTR; rs4693472, rs3733227, rs1848067, and rs6535374 in intron region) of SCD5 gene and two SNPs (rs1799750 and rs1144393 in promoter region) of MMP1 gene. The genotype of SCD5 and MMP1 gene SNPs were determined by direct sequencing and pyrosequencing, respectively. One hundred sixty-two patients with HCC and two hundred twenty-five control subjects were recruited in Korean male population. In terms of genotype frequencies, SCD5 genotype TC, GA, AG, and CG of rs6840, rs1065403, rs3821974, and rs3733230, respectively were higher in control group than HCC. In addition, these genotype decreased the risk (rs6840; OR 0.55, 95% CI 0.31–0.99; rs1065403; OR 0.46, 95% CI 0.26–0.83; rs3821974; OR 0.56, 95% CI 0.31–0.99; rs3733230; OR 0.62, 95% CI 0.34–1.12) of HCC, which may work as a prevention of HCC. At least one minor allele carrier of SCD5 gene polymorphisms were related to decreased risk of HCC for AFP cut-point levels > 200 or > 400 ng/ml, respectively. Our results indicate that polymorphisms in the 3ʹ-UTR of the SCD5 gene may associated with HCC in the Korean male population.
Similar content being viewed by others
References
Statistics Korea (2017) Annual report on the causes of death statistics. Statistics Korea, Daejeon, pp. 12–13
Korean Liver Cancer Study Group (KLCSG); National Cancer Center, Korea (NCC) (2015) 2014 Korean Liver Cancer Study Group-National Cancer Center Korea practice guideline for the management of hepatocellular carcinoma. Korean J Radiol 16:465–522
Omata M, Cheng AL, Kokudo N, Kudo M, Lee JM, Jia J et al (2017) Asia-Pacific clinical practice guidelines on the management of hepatocellular carcinoma: a 2017 update. Hepatol Int 11:317–370
Jung KW, Ha E, Yu GI, Kim SJ, Chung WJ, Jang BK et al (2009) TNF alpha promoter polymorphism is a risk factor for susceptibility in hepatocellular carcinoma in Korean population. Clin Chim Acta 407:16–19
Zheng X, Han C, Shan R, Zhang H, Zheng Z, Liu Y, Wang A (2015) Association of interleukin-6 polymorphisms with susceptibility to hepatocellular carcinoma. Int J Clin Exp Med 8:6252–6256
Xiao Q, Fu B, Chen P, Liu ZZ, Wang W, Ye Q (2016) Three polymorphisms of tumor necrosis factor-alpha and hepatitis B virus related hepatocellular carcinoma: a meta-analysis. Medicine 95:e5609
Qiao K, Zhang S, Trieu C, Dai Q, Huo Z, Du Y, Lu W, Hou W (2017) Genetic polymorphism of MTHFR C677T influences susceptibility to HBV-related hepatocellular carcinoma in a Chinese Population: a case-control study. Clin Lab 63:787–795
Tahmasebi Birgani M, Carloni V (2017) Tumor microenvironment, a paradigm in hepatocellular carcinoma progression and therapy. Int J Mol Sci 18:405
Korde LA, Lusa L, McShane L, Lebowitz PF, Lukes L, Camphausen K et al (2010) Gene expression pathway analysis to predict response to neoadjuvant docetaxel and capecitabine for breast cancer. Breast Cancer Res Treat 119:685–699
Youssef J, Badr M (2011) Peroxisome proliferator-activated receptors and cancer: challenges and opportunities. Br J Pharmacol 164:68–82
Peters JM, Shah YM, Gonzalez FJ (2012) The role of peroxisome proliferator-activated receptors in carcinogenesis and chemoprevention. Nat Rev Cancer 12:181–195
La Paglia L, Listì A, Caruso S, Amodeo V, Passiglia F, Bazan V, Fanale D (2017) Potential role of ANGPTL4 in the cross talk between metabolism and cancer through PPAR signaling pathway. PPAR Res 2017:8187235
Chen YZ, Xue JY, Chen CM, Yang BL, Xu QH, Wu F et al (2012) PPAR signaling pathway may be an important predictor of breast cancer response to neoadjuvant chemotheraphy. Cancer Chemother Pharmacol 70:637–644
Wang J, Yu L, Schmidt RE, Su C, Huang X, Gould K, Cao G (2005) Characterization of HSCD5, a novel human stearoyl-CoA desaturase unique to primates. Biochem Biophys Res Commun 332:735–742
Calvisi DF, Wang C, Ho C, Ladu S, Lee SA, Mattu S et al (2011) Increased lipogenesis, induced by AKT-mTORC1-RPS6 signaling, promotes development of human hepatocellular carcinoma. Gastroenterology 140:1071–1083
Roongta UV, Pabalan JG, Wang X, Ryseck RP, Fargnoli J, Henley BJ et al (2011) Cancer cell dependence on unsaturated fatty acids implicates stearoyl-CoA desaturase as a target for cancer therapy. Mol Cancer Res 9:1551–1561
Moore S, Knudsen B, True LD, Hawley S, Etzioni R, Wade C et al (2005) Loss of stearoyl-CoA desaturase expression is a frequent event in prostate carcinoma. Int J Cancer 114:563–571
Bellenghi M, Puglisi R, Pedini F, De Feo A, Felicetti F, Bottero L et al (2015) SCD5-induced oleic acid production reduces melanoma malignancy by intracellular retention of SPARC and cathepsin B. J Pathol 236:315–325
He M, Guo S, Li Z (2015) In situ characterizing membrane lipid phenotype of breast cancer cells using mass spectrometry profiling. Sci Rep 5:11298
Rundhaug JE (2005) Matrix metalloproteinases and angiogenesis. J Cell Mol Med 9:267–285
Mannello F (2006) Multipotent mesenchymal stromal cell recruitment, migration, and differenciation: what have matrix metalloproteinases got to do with it? Stem Cells 24:1904–1907
Affara M, Dunmore BJ, Sanders DA, Johnson N, Print CG, Charnock-Jones DS (2011) MMP1 bimodal expression and differential response to inflammatory mediators is linked to promoter polymorphisms. BMC Genom 12:43
Lin CY, Chao A, Wang TH, Hsueh S, Lee YS, Wu TI et al (2014) A dual tyrosine kinase inhibitor lapatinib suppresses overexpression of matrix metallopeptidase 1(MMP1) in endometrial cancer. J Mol Med 92:969–981
Liu B, Yi M, Tang Y, Liu Q, Qiu H, Zou Y et al (2016) MMP-1 promoter polymorphism is associated with risk of radiation-induced lung injury in lung cancer patients treated with radiotheraphy. Oncotarget 7:70175–70184
Lai YL, Gong CL, Fu CK, Yueh TC, Tsai CW, Chang WS et al (2017) The contribution of matrix metalloproteinase-1 genotypes to hepatocellular carcinoma susceptibility in Taiwan. Cancer Genomics Proteomics 14:119–125
Padala C, Tupurani MA, Puranam K, Gantala S, Shyamala N, Kondapalli MS et al (2017) Synergistic effect of collagenase-1 (MMP1), stromelysin-1 (MMP3) and gelatinase-B (MMP9) gene polymorphisms in breast cancer. PLoS ONE 12:e0184448
Yang MD, Lin KC, Lu MC, Jeng LB, Hsiao CL, Yueh TC et al (2017) Contribution of metalloproteinases-1 genotypes to gastric cancer susceptibility in Taiwan. Biomedicine 7:18–24
Lewis CM (2002) Genetic association studies: design, analysis and interpretation. Brief Bioinform 3:146–153
Huang GL, Li BK, Zhang MY, Zhang HZ, Wei RR, Yuan YF et al (2010) LOH analysis of genes around D4S2964 identifies ARD1B as a prognostic predictor of hepatocellular carcinoma. World J Gastroenterol 16:2046–2054
Herbeck JT, Gottlieb GS, Winkler CA, Nelson GW, An P, Maust BS et al (2010) Multistage genome-wide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. J Infect Dis 201:618–626
Hwang SJ, Yang Q, Meigs JB, Pearce EN, Fox CS (2007) A genome-wide association for kidney function and endocrine-related traits in the NHLBI’s Framingham Heart Study. BMC Med Genet 8(Suppl 1):S10
Meng W, Bai B, Bai Z, Li Y, Yue P, Li X, Qiao L (2016) The immunosuppression role of alpha-fetoprotein in human hepatocellular carcinoma. Discov Med 21:489–494
Liao X, Han C, Qin W, Liu X, Yu L, Zhu G et al (2017) PLCE1 polymorphisms and expression combined with serum AFP level predicts survival of HBV-related hepatocellular carcinoma patients after hepatectomy. Oncotarget 8:29202–29219
Chen CT, Liao WY, Hsu CC, Hsueh KC, Yang SF, Teng YH, Yu YL (2017) FUT2 genetic variants as predictors of tumor development with hepatocellular carcinoma. Int J Med Sci 14:885–890
Yao M, Zhao J, Lu F (2016) Alpha-fetoprotein still is a valuable diagnostic and prognosis predicting biomarker in hepatitis B virus infection-related hepatocellular carcinoma. Oncotarget 7:3702–3708
Eurich D, Boas-Knoop S, Morawietz L, Neuhaus R, Somasundaram R, Ruehl M et al (2001) Association of mannose-binding lectin-2 gene polymorphism with the development of hepatitis C-induced hepatocellular carcinoma. Liver Int 31:1006–1012
Eurich D, Boas-Knoop S, Bahra M, Neuhaus R, Somasundaram R, Neuhaus P, Neumann U, Seehofer D (2012) Role of IL28B polymorphism in the development of hepatitis C virus-induced hepatocellular carcinoma, graft fibrosis, and post-transplant antiviral therapy. Transplantation 93:644–649
Acknowledgements
This work was supported by the research promoting grant from the Keimyung University Dongsan Medical Center in 2010 and 2012.
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Conflict of interest
None of the authors has non-financial conflict of interest related to this study.
Ethical approval
All procedures performed in studies involving human participants were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.
Informed consent
Informed consent was obtained from all individual participants included in the study.
Rights and permissions
About this article
Cite this article
Yu, G.I., Mun, K.H., Yang, S.H. et al. Polymorphisms in the 3′-UTR of SCD5 gene are associated with hepatocellular carcinoma in Korean population. Mol Biol Rep 45, 1705–1714 (2018). https://doi.org/10.1007/s11033-018-4313-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11033-018-4313-6