Abstract
The abundance and composition of bacterioplankton of the Northern South China Sea (NSCS) were investigated using flow cytometry and high-throughput sequencing. The results showed that the absolute abundance of bacterioplankton retained high values in surface waters at both continental shelf and oceanic sites and Proteobacteria, Cyanobacteria, and Bacteroidetes represented the three typical dominant phyla in NSCS. The average bacterioplankton abundances at 5 m, 75 m, and 200 m were 9.55, 5.04, and 1.32 × 105 cells mL−1, respectively, and there was a significantly positive correlation between bacterioplankton abundance and Chl a content (r = 0.84, p < 0.01). Drastic changes of the bacterioplankton community occurred in different water layers. Three operational taxonomic units (OTUs), whose distribution were significantly different between 5-m and 75-m water layers, all belonged to Flavobacteriales of the Bacteroidetes (p < 0.05). In addition, bacterioplankton community richness and diversity at the continental shelf (CS) was generally higher than at oceanic stations (SB and KI). Five OTUs, which favored the habitat of continental shelf, belonged to Alphaproteobacteria including the orders of the SAR11 cluster, Rhodospirillales, Rhodobacterales and other unclassified orders (p < 0.05). Two OTUs, which favored the habitat of oceanic stations, were assigned to the orders of Flavobacteriales and Alteromonadales. Furthermore, the abundances of two OTUs belonging to the Cyanobacteria phylum and Verrucomicrobiales order were significantly different between the sea basin (SB) and Kuroshio influenced area (KI) stations (p < 0.05).
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Abbreviations
- OTU:
-
Operational Taxonomic Unit
- NSCS:
-
Northern South China Sea
- CS:
-
Continental shelf
- SB:
-
Sea basin
- KI:
-
Kuroshio influenced station
- DIN:
-
Dissolved inorganic nitrogen
- DIP:
-
Dissolved inorganic phosphate
- SST:
-
Sea surface temperature
- Chl a :
-
Chlorophyll a
- CA:
-
Correspondence analysis
References
Almutairi A (2015) Spatial-temporal variations and diversity of the bacterioplankton communities in thecoastal waters of Kuwait. Mar Pollut Bull 100(2):699–709. https://doi.org/10.1016/j.marpolbul.2015.09.016
Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjoqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C (2016) Spatio-temporal interdependence of bacteria and phytoplankton during a Baltic Sea spring bloom. Front Microbiol 7:517. https://doi.org/10.3389/fmicb.2016.00517
Cottrell WT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66(12):5116–5122
Díez-Vives C, Gasol JM, Acinas SG (2014) Spatial and temporal variability among marine Bacteroidetes populations in the NW Mediterranean Sea. Syst Appl Microbiol 37(1):68–78. https://doi.org/10.1016/j.syapm.2013.08.006
Du J, Xiao K, Li L, Ding X, Liu H, Lu Y, Zhou S (2013) Temporal and spatial diversity of bacterial communities in coastal waters of the South China Sea. PLoS One 8(6):e66968. https://doi.org/10.1371/journal.pone.0066968
Dziewit L, Adamczuk M, Szuplewska M, Bartosik D (2011) DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria. J Microbiol Methods 86(2):166–174. https://doi.org/10.1016/j.mimet.2011.04.016
Emami K, Askari A, Ullrich M, Mohinudeen K, Anil AC, Khandeparker L, Burgess JG, Mesbahi E (2012) Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry. PLoS One 7(6):e38515. https://doi.org/10.1371/journal.pone.0038515
GB/T 12763.4–2007 (2007) Specifications for oceanographia survey—part 4: survey of chemical parameters in sea water. Standards Press of China, Beijing In Chinese
Ghiglione JF, Larcher M, Lebaron P (2005) Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea. Water Air Soil Pollut 192(1):227–238 https://hal.archives-ouvertes.fr/hal-00091839
Giovannoni SJ (2017) SAR11 bacteria: the most abundant plankton in the oceans. Annu Rev Mar Sci 9:231–255. https://doi.org/10.1146/annurev-marine-010814-015934
Gómez-Pereira PR, Fuchs BM, Alonso C, Oliver MJ, van Beusekom JE, Amann R (2010) Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean. ISME J 4(4):472–487. https://doi.org/10.1038/ismej.2009.142
Guo L, Xiu P, Chai F (2017) Enhanced chlorophyll concentrations induced by Kuroshio intrusion fronts in the northern South China Sea. Geophys Res Lett 44(22):11565–11572. https://doi.org/10.1002/2017gl075336
He T, Zhang X (2016) Characterization of bacterial communities in deep-sea hydrothermal vents from three oceanic regions. Mar Biotechnol 18(2):232–241. https://doi.org/10.1007/s10126-015-9683-3
Jing H, Liu H (2012) Contrasting bacterial dynamics in subtropical estuarine and coastal waters. Estuar Coasts 35(4):976–990. https://doi.org/10.1007/s12237-012-9504-0
Jing H, Xia X, Suzuki K, Liu H (2013) Vertical profiles of bacteria in the tropical and subarctic oceans revealed by pyrosequencing. PLoS One 8(11):e79423. https://doi.org/10.1371/journal.pone.0079423
Kataoka T, Hodoki Y, Suzuki K, Hiroaki S, Seigo H (2009) Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean. J Mar Syst 77(1–2):197–207. https://doi.org/10.1016/j.jmarsys.2008.12.006
Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS (2013) Global marine bacterial diversity peaks at high latitudes in winter. ISME J 7(9):1669–1677. https://doi.org/10.1038/ismej.2013.37
Li J, Jiang X, Li G, Jing Z, Zhou L, Ke Z, Tan Y (2017) Distribution of picoplankton in the northeastern South China Sea with special reference to the effects of the Kuroshio intrusion and the associated mesoscale eddies. Sci Total Environ 589:1–10. https://doi.org/10.1016/j.scitotenv.2017.02.208
Liu H, Chang J, Tseng C (2007) Seasonal variability of picoplankton in the northern South China Sea at the SEATS station. Deep-Sea Res Pt II 54(14–15):1602–1616. https://doi.org/10.1016/j.dsr2.2007.05.004
Liu X, Hu H, Liu Y, Xiao K, Cheng F, Li J, Xiao T (2015) Bacterial composition and spatiotemporal variation in sediments of Jiaozhou Bay, China. J Soils Sediments 15(3):732–744. https://doi.org/10.1007/s11368-014-1045-7
Lo Giudice A, Michaud L, de Pascale D, De Domenico M, di Prisco G, Fani R, Bruni V (2006) Lipolytic activity of Antarcticcold-adapted marine bacteria (Terra Nova Bay, Ross Sea). J Appl Microbiol 101(5):1039–1048. https://doi.org/10.1111/j.1365-2672.2006.03006.x
Lo Giudice A, Caruso C, Mangano S, Bruni V, De Domenico M, Michaud L (2012) Marine bacterioplankton diversity and community composition in an Antarctic coastal environment. Microb Ecol 63(1):210–223. https://doi.org/10.1007/s00248-011-9904-x
Nelson CE, Carlson CA (2012) Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton. Environ Microbiol 14:1500–1516. https://doi.org/10.1111/j.1462-2920.2012.02738.x
Nemergut DR, Costello EK, Hamady M, Lozupone C, Jiang L, Schmidt SK, Fierer N, Townsend AR, Cleveland CC, Stanish L, Knight R (2011) Global patterns in the biogeography of bacterial taxa. Environ Microbiol 13(1):135–144. https://doi.org/10.1111/j.1462-2920.2010.02315.x
Parks DH, Tyson GW, Hugenholtz P, Beiko RG (2014) STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics 30(21):3123–3124. https://doi.org/10.1093/bioinformatics/btu494
Parsons TR, Maita Y, Lalli CM (1984) A manual of chemical and biological methods for seawater analysis. Pergamon Press, New York
Pommier T, Neal P, Gasol JM, Coll M, Acinas SG, Pedrós-Alió C (2010) Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA. Aquat Microb Ecol 61(3):221–233. https://doi.org/10.3354/ame01484
Schattenhofer M, Fuchs BM, Amann R, Zubkov MV, Tarran GA, Pernthaler J (2009) Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ Microbiol 11(8):2078–2093. https://doi.org/10.1111/j.1462-2920.2009.01929.x
Shan D, Wei G, Li M, Wang W, Li X, Gao Z, Shao Z (2015) Distribution and diversity of bacterioplankton communities in subtropical seawater around Xiamen Island, China. Microbiol Res 175:16–23. https://doi.org/10.1016/j.micres.2015.02.005
Shang S, Li L, Li J, Li Y, Lin G, Sun J (2012) Phytoplankton bloom during the northeast monsoon in the Luzon Strait bordering the Kuroshio. Remote Sens Environ 124:38–48. https://doi.org/10.1016/j.rse.2012.04.022
Shang SL, Dong Q, Hu CM, Lin G, Li YH, Shang SP (2014) On the consistency of MODIS chlorophyll a products in the northern South China Sea. Biogeosciences 11(2):269–280. https://doi.org/10.5194/bg-11-269-2014
Suh S, Park M, Hwang J, Lee S, Chung Y, Lee TK (2014) Distinct patterns of marine bacterial communities in the south and North Pacific oceans. J Microbiol 52(10):834–841. https://doi.org/10.1007/s12275-014-4287-6
Tang DL, Ni IH, Kester DR, Muller-Karger FE (1999) Remote sensing observations of winter phytoplankton blooms southwest of the Luzon Strait in the South China Sea. Mar Ecol Prog Ser 191:43–51. https://doi.org/10.3354/meps191043
Treusch AH, Vergin KL, Finlay LA, Donatz MG, Burton RM, Carlson CA, Giovannoni SJ (2009) Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J 3(10):1148–1163. https://doi.org/10.1038/ismej.2009.60
Wang JJ, Tang DL, Su Y (2010) Winter phytoplankton bloom induced by subsurface upwelling and mixed layer entrainment southwest of Luzon Strait. J Mar Syst 83(3–4):141–149. https://doi.org/10.1016/j.jmarsys.2010.05.006
West NJ, Lepere C, Manes CLD, Catala P, Scanlan DJ, Lebaron P (2016) Distinct spatial patterns of SAR11, SAR86, and actinobacteria diversity along a transect in the ultra-oligotrophic South Pacific Ocean. Front Microbiol 7:234. https://doi.org/10.3389/fmicb.2016.00234
Williams TJ, Wilkins D, Long E, Evans F, DeMaere MZ, Raftery MJ, Cavicchioli R (2013) The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics. Environ Microbiol 15(5):1302–1317. https://doi.org/10.1111/1462-2920.12017
Xia X, Guo W, Liu H (2015) Dynamics of the bacterial and archaeal communities in the northern South China Sea revealed by 454 pyrosequencing of the 16S rRNA gene. Deep-Sea Res Pt II Top Stud Oceanogr 117:97–107. https://doi.org/10.1016/j.dsr2.2015.05.016
Zhang Y, Zhao Z, Dai M, Jiao N, Herndl GJ (2014) Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea. Mol Ecol 23(9):2260–2274. https://doi.org/10.1111/mec.12739
Zhao Y, Zhao L, Zhang WC, Sun J, Huang LF, Li J, Zhai HC, Liu SM, Xiao T (2015) Variations of picoplankton abundances during blooms in the East China Sea. Deep-Sea Res Pt II Top Stud Oceanogr 124:100–108. https://doi.org/10.1016/j.dsr2.2015.03.010
Zheng B, Wang L, Liu L (2014) Bacterial community structure and its regulating factors in the intertidal sediment along the Liaodong Bay of Bohai Sea, China. Microbiol Res 169(7–8):585–592. https://doi.org/10.1016/j.micres.2013.09.019
Acknowledgments
The authors are thankful for the comments and suggestions of the anonymous reviewers and the editors that helped to improve this paper. This worked was supported by Major State Basic Research Development Program of China (973 Program, 2015CB452904, 2015CB452901), Central Public-interest Scientific Institution Basal Research Fund, South China Sea Fisheries Research Institute, CAFS (2015TS25, 2017YB23, 2016YD02, 2017YB06), Major Project of Ministry of Agriculture (NFZX2013), Science and Technology Planning Project of Guangdong Province, China (2014B030301064) and Guangdong Natural Science Foundation (2015A030313785).
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Shi, R., Li, J., Qi, Z. et al. Abundance and community composition of bacterioplankton in the Northern South China Sea during winter: geographic position and water layer influences. Biologia 73, 197–206 (2018). https://doi.org/10.2478/s11756-018-0023-8
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DOI: https://doi.org/10.2478/s11756-018-0023-8