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HDV RNA Replication: Ancient Relic or Primer?

  • Chapter
Hepatitis Delta Virus

Part of the book series: Current Topics in Microbiology and Immunology ((CT MICROBIOLOGY,volume 307))

Abstract

HDV replicates its circular RNA genome using a double rolling-circle mechanism and transcribes a hepatitis delta antigen-encodeing mRNA from the same RNA template during its life cycle. Both processes are carried out by RNA-dependent RNA synthesis despite the fact that HDV does not encode an RNA-dependent RNA polymerase (RdRP). Cellular RNA polymerase II has long been implicated in these processes. Recent findings, however, have shown that the syntheses of genomic and antigenomic RNA strands have different metabolic requirements, including sensitives to α-amanitin and the site of synthesis. Evidence is summarized here for the involvement of other cellular polymerases, probably pol I, in the synthesis of antigenomic RNA strand. The ability of mammalian cells to replicate HDV RNA implies that RNA-dependent RNA synthesis was preserved throughout evolution.

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References

  • Agrawal N, Dasaradhi PV, Mohmmed A, Malhotra P, Bhatnagar RK, Mukherjee SK (2003) RNA interference: biology, mechanism, and applications. Microbiol Mol Biol Rev 67:657–685

    Article  PubMed  CAS  Google Scholar 

  • Beard MR, Macnaughton TB, Gowans EJ (1996) Identification and characterization of a hepatitis delta virus RNA transcriptional promoter. J Virol 70:4986–4995

    PubMed  CAS  Google Scholar 

  • Bell P, Brazas R, Ganem D, Maul GG (2000) Hepatitis delta virus replication generates complexes of large hepatitis delta antigen and antigenomic RNA that affiliate with and alter nuclear domain 10. J Virol 74:5329–5336

    Article  PubMed  CAS  Google Scholar 

  • Branch AD, Robertson, HD (1984) A replication cycle for viroids and other small infectious RNAs. Science 223:450–455

    PubMed  CAS  Google Scholar 

  • Branch AD, Benenfeld BJ, Baroudy BM, Wells FV, Gerin JL, Robertson HD (1989) An ultraviolet-sensitive RNA structural element in a viroid-like domain of the hepatitis delta virus. Science 243:649–652

    PubMed  CAS  Google Scholar 

  • Brazas R, Ganem D (1996) A cellular homolog of hepatitis delta antigen: implications for viral replication and evolution. Science 274:90–94

    Article  PubMed  CAS  Google Scholar 

  • Casey JL, Bergmann KF, Brown TL, Gerin J.L (1992) Structural requirements for RNA editing in hepatitis δ virus: Evidence for a uridine-o-cytidine editing mechanism. Proc Natl Acad Sci USA 89:7149–7153

    Article  PubMed  CAS  Google Scholar 

  • Chang J, Taylor J (2002) In vivo RNA-directed transcription, with template switching, by a mammalian RNA polymerase. EMBO J 21:157–164

    Article  PubMed  CAS  Google Scholar 

  • Chang M-F, Baker SC, Soe LH, Kamahora T, Makino S, Govindarajan S, Lai MMC (1988) Human hepatitis delta antigen is a nuclear phosphoprotein with RNA-binding activity. J Virol 62:2403–2410

    PubMed  CAS  Google Scholar 

  • Chang MF, Sun CY, Chen CJ, Chang SC (1993) Functional motifs of delta antigen essential for RNA binding and replication of hepatitis delta virus. J Virol 67:2529–2536

    PubMed  CAS  Google Scholar 

  • Chao M, Hsieh S-Y, Taylor J (1990) Role of two forms of hepatitis delta virus antigen: Evidence for a mechanism of self-limiting genome replication. J Virol 64:5006–5009

    Google Scholar 

  • Chao M, Hsieh S-Y, Taylor J (1991) The antigen of hepatitis delta virus: examination of in vitro RNA-binding activity. J Virol 65:4057–4062

    PubMed  CAS  Google Scholar 

  • Chen P-J, Kalpana G, Goldberg J, Mason W, Werner B, Gerin J, Taylor J (1986) Structure and replication of the genome of the hepatitis delta virus. Proc Natl Acad Sci USA 83:8774–8778

    Article  PubMed  CAS  Google Scholar 

  • Cheng Q, Jayan GC, Casey JL (2003) Differential inhibition of RNA editing in hepatitis delta virus genotype III by the short and long forms of hepatitis delta antigen. J Virol 77:7786–7795

    Article  PubMed  CAS  Google Scholar 

  • Cullen BR (2003) Nuclear RNA export. J Cell Sci 116:587–597

    Article  PubMed  Google Scholar 

  • de Bruin W, Leenders W, Kos T, Yap SH (1994) In vitro binding properties of the hepatitis delta antigens to the hepatitis B virus envelope proteins: potential significance for the formation of delta particles. Virus Res 31:27–37

    Article  PubMed  Google Scholar 

  • Glenn JS, White JM (1991) trans-Dominant inhibition of human hepatitis delta virus genome replication. J Virol 65:2357–2361

    PubMed  CAS  Google Scholar 

  • Glenn JS, Watson JA, Havel CM, White JM (1992) Identification of a prenylation site in delta virus large antigen. Science 256:1331–1333

    PubMed  CAS  Google Scholar 

  • Goto T, Kato N, Ono-Nita SK, Yoshida H, Otsuka M, Shiratori Y, Omata M (2000) Large isoform of hepatitis delta antigen activates serum response factor-associated transcription. J Biol Chem 275:37311–37316

    Article  PubMed  CAS  Google Scholar 

  • Gudima S, Wu SY, Chiang CM, Moraleda G, Taylor J (2000) Origin of hepatitis delta virus mRNA. J Virol 74:7204–7210

    Article  PubMed  CAS  Google Scholar 

  • Gudima S, Chang J, Moraleda G, Azvolinsky A, Taylor J (2002) Parameters of human hepatitis delta virus genome replication: the quantity, quality, and intracellular distribution of viral proteins and RNA. J Virol 76:3709–3719

    Article  PubMed  CAS  Google Scholar 

  • Gudima SO, Chang J, Taylor JM (2005) Reconstitution in cultured cells of replicating HDV RNA from pairs of less than full-length RNAs. RNA 11:90–98

    Article  PubMed  CAS  Google Scholar 

  • Hsieh S-Y, Chao M, Coates L, Taylor J (1990) Hepatitis delta virus genome replication: a polyadenylated mRNA for delta antigen. J Virol 64:3192–3198

    PubMed  CAS  Google Scholar 

  • Hsieh S-Y, Taylor J (1991) Regulation of polyadenylation of hepatitis delta virus antigenomic RNA. J Virol 65:6438–6446

    PubMed  CAS  Google Scholar 

  • Huang ZS, Wu HN (1998) Identification and characterization of the RNA chaperone activity of hepatitis delta antigen peptides. J Biol Chem 273:26455–26461

    Article  PubMed  CAS  Google Scholar 

  • Huang WH, Yung BY, Syu WJ, Lee YH (2001) The nucleolar phosphoprotein B23 interacts with hepatitis delta antigens and modulates the hepatitis delta virus RNA replication. J Biol Chem 276:25166–25175

    Article  PubMed  CAS  Google Scholar 

  • Hwang SB, Lai MMC (1993) Isoprenylation mediates direct protein-protein interactions between hepatitis large delta antigen and hepatitis B virus surface antigen. J Virol 67:7659–7662

    PubMed  CAS  Google Scholar 

  • Hwang SB, Lai MMC (1994) Isoprenylation masks a conformational epitope and enhances trans-dominant function of the large hepatitis delta antigen. J Virol 68:2958–2964

    PubMed  CAS  Google Scholar 

  • Jayan GC, Casey JL (2002) Increased RNA editing and inhibition of hepatitis delta virus replication by high-level expression of ADAR1 and ADAR2. J Virol 2002 76:3819–3827

    Article  PubMed  CAS  Google Scholar 

  • Jeng KS, Su PY, Lai MM (1996) Hepatitis delta antigens enhance the ribozyme activities of hepatitis delta virus RNA in vivo. J Virol 70:4205–4209

    PubMed  CAS  Google Scholar 

  • Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S (2004) The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature 432:517–522, Erratum: Nature 2005 433:661

    Article  PubMed  CAS  Google Scholar 

  • Kos A, Dijkema R, Arnberg AC, van der Merde PH, Schellekens H (1986) The hepatitis delta (δ) virus possesses a circular RNA. Nature 323:558–560

    Article  PubMed  CAS  Google Scholar 

  • Kuo MY, Sharmeen L, Dinter-Gottlieb G, Taylor J (1988) Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus. J Virol 62:4439–4444

    PubMed  CAS  Google Scholar 

  • Kuo MYP, Chao M, Taylor J (1989) Initiation of replication of the human hepatitis delta virus genome from cloned DNA: Role of delta antigen. J Virol 63:1945–1950

    PubMed  CAS  Google Scholar 

  • Lee C-Z, Lin J-H, McKnight K, Lai MMC (1993) RNA-binding activity of hepatitis delta antigen involves two arginine-rich motifs and is required for hepatitis delta virus RNA replication. J Virol 67:2221–2227

    PubMed  CAS  Google Scholar 

  • Lee C-Z, Chen P-J, Lai MMC, Chen DS (1994). Isoprenylation of large hepatitis delta antigen is necessary but not sufficient for hepatitis delta virus assembly. Virology 199:169–175

    Article  PubMed  CAS  Google Scholar 

  • Lee C-Z, Chen PJ, Chen DS (1995) Large hepatitis delta antigen in packaging and replication inhibition: Role of the carboxyl-terminal 19 amino acids and aminoterminal sequences. J Virol 69:5332–5336

    PubMed  CAS  Google Scholar 

  • Lee CH, Chang SC, Chen CJ, Chang MF (1998) The nucleolin binding activity of hepatitis delta antigen is associated with nucleolus targeting. J Biol Chem. 273, 7650–7656

    Article  PubMed  CAS  Google Scholar 

  • Li YJ, Macnaughton TB, Gao L, Lai MMC (2006) RNA-templated replication of hepatitis delta virus genomic and antigenomic RNA associate with different nuclear bodies. J Virol (in press)

    Google Scholar 

  • Li YJ, Stallcup MR, Lai MM (2004) Hepatitis delta virus antigen is methylated at rginine residues, and methylation regulates subcellular localization and RNA replication. J Virol 78:13325–13334

    Article  PubMed  CAS  Google Scholar 

  • Lin J-H, Chang M-F, Baker SC Govindarajan S, Lai MMC (1990) Characterization of hepatitis delta antigen: specific binding to hepatitis delta virus RNA. J Virol 64:4051–4058

    PubMed  CAS  Google Scholar 

  • Lazinski DW, Taylor JM (1993) Relating structure to function in the hepatitis delta virus antigen. J Virol 67:2672–2680

    PubMed  CAS  Google Scholar 

  • Lazinski DW, Taylor JM (1994) Expression of hepatitis delta virus RNA deletions: cis and trans requirements for self-cleavage, ligation, and RNA packaging. J Virol 68:2879–2888

    PubMed  CAS  Google Scholar 

  • Lolle SJ, Victor JL, Young JM, Pruitt RE (2005) Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis. Nature 434:505–509

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Gowans EJ, Jilbert AR, Burrell CJ (1990) Hepatitis delta virus RNA, protein synthesis and associated cytoxicity in a stably transfected cell line. Virology 177:692–698

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Gowans EJ, Mcnamara SP, and Burrell CJ (1991) Hepatitis δ antigen is necessary for access of hepatitis virus RNA to the cell transcriptional machinery but is not part of the transcriptional complex. Virology 1184:387–390

    PubMed  CAS  Google Scholar 

  • Macnaughton TB, Wang YJ, Lai MM (1993a) Replication of hepatitis delta virus RNA: effect of mutations of the autocatalytic cleavage sites. J Virol 67:2228–2234

    PubMed  CAS  Google Scholar 

  • Macnaughton TB, Beard MR, Chao M, Gowans EJ, Lai MM (1993b) Endogenous promoters can direct the transcription of hepatitis delta virus RNA from a recircularized cDNA template. Virology 196:629–636

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Lai MMC (2002a) Genomic but not antigenomic hepatitis delta virus RNA is preferentially exported from the nucleus immediately after synthesis and processing. J Virol 76:3928–3935

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Lai MMC (2002b) Large hepatitis delta antigen is not a suppressor of hepatitis delta virus RNA synthesis once RNA replication is established. J Virol. 76:9910–9919

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Shi ST, Modahl LE, Lai MM (2002) Rolling circle replication of hepatitis delta virus RNA is carried out by two different cellular RNA polymerases. J Virol 76:3920–3927

    Article  PubMed  CAS  Google Scholar 

  • Macnaughton TB, Li YI, Doughty AL, Lai MM (2003) Hepatitis delta virus RNA encoding the large delta antigen cannot sustain replication due to rapid accumulation of mutations associated with RNA editing. J Virol 77:12048–12056

    Article  PubMed  CAS  Google Scholar 

  • Modahl LE, Lai MMC (1998) Transcription of hepatitis delta antigen mRNA continues throughout hepatitis delta virus (HDV) replication: A new model of HDV RNA transcription and replication. J Virol 72:5449–5456

    PubMed  CAS  Google Scholar 

  • Modahl LE, Lai MM (2000) The large delta antigen of hepatitis delta virus potently inhibits genomic but not antigenomic RNA synthesis: a mechanism enabling initiation of viral replication. J Virol 74:7375–7380

    Article  PubMed  CAS  Google Scholar 

  • Modahl LE, Macnaughton TB, Zhu N, Johnson DL, Lai MM (2000) RNA-Dependent replication and transcription of hepatitis delta virus RNA involve distinct cellular RNA polymerases. Mol Cell Biol 20:6030–6039

    Article  PubMed  CAS  Google Scholar 

  • Mu J-J, Wu H-L, Chiang B-L, Chang R-P, Chen D-S, Chen P-J (1999) Characterization of the phosphorylated forms and the phosphorylated residues of hepatitis delta virus delta antigens. J Virol 73:10540–10545

    PubMed  CAS  Google Scholar 

  • Mu J-J, Chen DS, Chen P-J (2001) The conserved serine 177 in the delta antigen of hepatitis delta virus is one putative phosphorylation site and is required for efficient viral RNA replication. J Virol 75:9087–9095

    Article  PubMed  CAS  Google Scholar 

  • Mu J-J, Tsay YG, Juan LJ, Fu TF, Huang WH, Chen D-S, Chen P-J (2004) The small delta antigen of hepatitis delta virus is an acetylated protein and acetylation of lysine 72 may influence its cellular localization and viral RNA synthesis. Virology 319:60–70

    Article  PubMed  CAS  Google Scholar 

  • Nie X, Chang J, Taylor JM (2004) Alternative processing of hepatitis delta virus antigenomic RNA transcripts. J Virol 78:4517–4524

    Article  PubMed  CAS  Google Scholar 

  • O’Malley B, Lazinski DW (2005) Roles of carboxyl-terminal and farnesylated residues in the functions of the large hepatitis delta antigen. J Virol 79:1142–1153

    Article  PubMed  CAS  Google Scholar 

  • Otto JC, Casey PJ (1996) The hepatitis delta virus large antigen is farnesylated both in vitro and in animal cells. J Biol Chem 271:4569–4572

    Article  PubMed  CAS  Google Scholar 

  • Pearson H (2005) Cress overturns textbook genetics. News@Nature 21 Mar

    Google Scholar 

  • Reid CE, Lazinski DW (2000) A host-specific function is required for ligation of a wide variety of ribozyme-processed RNAs. Proc Natl Acad Sci USA 97:424–429

    Article  PubMed  CAS  Google Scholar 

  • Rizzetto M, Canese MG, Arico S, Crivelli O, Bonino F, Trepo CG, Verme G (1977) Immunofluorescence detection of a new antigen-antibody system (δ/anti-δ) associated to the hepatitis B virus in the liver and serum of HBsAg carriers. Gut 18:997–1003

    PubMed  CAS  Google Scholar 

  • Ryu W-S, Netter HJ, Bayer M, Taylor J (1993) Ribonucleoprotein complexes of hepatitis delta virus. J Virol 67:3281–3287

    PubMed  CAS  Google Scholar 

  • Sato S, Cornillez-Ty C, Lazinski DW (2004) By inhibiting replication, the large hepatitis delta antigen can indirectly regulate amber/W editing and its own expression. J Virol 78:8120–8134

    Article  PubMed  CAS  Google Scholar 

  • Sharmeen L, Kuo MY-P, Taylor J (1989) Self-ligating RNA sequences on the antigenome of human hepatitis delta virus. J Virol 63:1428–1430

    PubMed  CAS  Google Scholar 

  • Sheu G-T, Lai MMC (2000) Recombinant hepatitis delta antigen from E. coli promotes hepatitis delta virus RNA replication only from the genomic strand but not the antigenomic strand. Virology 278:578–586

    Article  PubMed  CAS  Google Scholar 

  • Sureau C, Guerra B, Lanford RE (1993) Role of the large hepatitis B virus envelope protein in infectivity of the hepatitis delta virion. J Virol 67:366–372

    PubMed  CAS  Google Scholar 

  • Tavanez JP, Cunha C, Silva MC, David E, Monjardino J, Carmo-Fonseca M (2002) Hepatitis delta virus ribonucleoproteins shuttle between the nucleus and the cytoplasm. RNA 8:637–646

    Article  PubMed  CAS  Google Scholar 

  • Volloch V, Schweitzer B, Rits S (1996) Antisense globin RNA inmouse erythoid tissues: Structure, origin, and possible function. Proc Natl Acad Sci USA 93:2476–2481

    Article  PubMed  CAS  Google Scholar 

  • Wei Y, Ganem D (1998) Activation of heterologous gene expression by the large isoform of hepatitis delta antigen. J Virol 72:2089–2096

    PubMed  CAS  Google Scholar 

  • Wang K-S, Choo Q-L, Weiner AJ, Ou J-H, Najerian RC, Thayer RM, Mullenbach GT, Denniston KJ, Gerin JL, Houghton M (1986). Structure, sequence and expression of the hepatitis (δ viral genome. Nature 323:508–514 Authors’ correction (1987). Nature 328:456

    Article  PubMed  CAS  Google Scholar 

  • Wang HW, Chen PJ, Lee CZ, Wu HL, Chen DS (1994) Packaging of hepatitis delta virus RNA via the RNA-binding domain of hepatitis delta antigens: different roles for the small and large delta antigens. J Virol 68:6363–6371

    PubMed  CAS  Google Scholar 

  • Wang HW, Wu HL, Chen DS, Chen PJ (1997) Identification of the functional regions required for hepatitis D virus replication and transcription by linker-scanning mutagenesis of viral genome. Virology 239:119–131

    Article  PubMed  CAS  Google Scholar 

  • Wang TC, Chao M (2005) RNA recombination of hepatitis delta virus in natural mixed-genotype infection and transfected cultured cells. J Virol 79:2221–2229

    Article  PubMed  CAS  Google Scholar 

  • West S, Gromak N, Proudfoot NJ (2004) Human 5′→3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites. Nature 432:522–525

    Article  PubMed  CAS  Google Scholar 

  • Wong SK, Lazinski DW (2002) Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1. Proc Natl Acad Sci USA 99:15118–15123

    Article  PubMed  CAS  Google Scholar 

  • Xia Y-P, Lai MMC (1992) Oligomerization of hepatitis delta antigen is required for both the trans-activating and trans-dominant inhibitory activities of the delta antigen. J Virol 66:6641–6648

    PubMed  CAS  Google Scholar 

  • Xia Y-P, Yeh C-T, Ou J-H, Lai MMC (1992). Characterization of nuclear targeting signal of hepatitis delta antigen: nuclear transport as a protein complex. J Virol 66:914–921

    PubMed  CAS  Google Scholar 

  • Yamaguchi Y, Filipovska J, Yano K, Furuya A, Inukai N, Narita T, Wada T, Sugimoto S, Konarska MM, Handa H (2001) Stimulation of RNA polymerase II elongation by hepatitis delta antigen. Science 293:124–127

    Article  PubMed  CAS  Google Scholar 

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Macnaughton, T.B., Lai, M.M.C. (2006). HDV RNA Replication: Ancient Relic or Primer?. In: Casey, J.L. (eds) Hepatitis Delta Virus. Current Topics in Microbiology and Immunology, vol 307. Springer, Berlin, Heidelberg . https://doi.org/10.1007/3-540-29802-9_2

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