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References
9.1 Further Reading
M.R., Wormald, and R.A. Dwek, Glycoproteins: Glycan presentation and protein-fold stability, Structure 7, R155–R160 (1999).
H. Takahashi, T. Nakanishi, K. Kami, Y. Arata and I. Shimada, A novel NMR method for determining the interfaces of large–protein complexes, Nature Structural Biology 7, 220–223 (2000).
T.I. Igumenova, A.E. McDermott, K. Zim, R.W. Martin, E.K. Paulson, and A.J. Wand, Assignments of carbon resonances for microcrystalline ubiquitin, J. Am. Chem. Soc. 126, 6720–6727 (2004).
J. Israelachvili, Differences between non-specific and bio-specific, and between equilibrium and non-equilibrium interactions in biological systems, Quar. Rev. Biophysics 38, 331–337 (2005).
G. Paillard and R. Lavery, Analysing protein-DNA recognition mechanisms, Structure 12, 113–122 (2004).
9.2 RNA Structure
R.W. Holley, J. Apgar, G.A. Everett, J.T. Madison, M. Marquisee, S.H. Merrill, J.R. Penswick and A. Zamir, Structure of a ribonucleic acid, Science 147, 1462–5 (1965).
P.J. Lukavsky and J.D. Puglisi, RNAPack: an integrated NMR approach to RNA structure determination, Methods 25(3), 316–32 (2001).
K. Bondensgaard, E.T. Mollova and A. Pardi, The global conformation of the hammerhead ribozyme determined using residual dipolar couplings, Biochemistry 41, 11532–11542 (2002).
V. Ramakrishnan, Ribosome structure and the mechanism of Translation, Cell 108, 557–572 (2002).
B. Furtig, C. Richter, J. Wohnert and H. Schwalbe, NMR spectroscopy of RNA, Chembiochem 4, 936–962 (2003).
M.P. Latham, D.J. Brown, S.A. McCallum and A. Pardi, NMR methods for studying the structure and dynamics of RNA, Chembiochem 6, 1492–1505 (2005).
P.J. Lukavsky and J.D. Puglisi, Structure determination of large biological RNAs, Methods Enzymol. 394, 399–416 (2005).
H.F. Noller, RNA structure: reading the ribosome, Science 309, 1508–1514 (2005).
9.3 Protein-Nucleic Acid Interactions
J.L. Battiste, H. Mao, N.S. Rao, R. Tan, D.R. Muhandiram, L.E. Kay, A.D. Frankel and J.R. Williamson, Helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex, Science 273, 1547–1551 (1996).
K. Huang, J.M. Louis, L. Donaldson, F.L. Lim, A.D. Sharrocks and G.M. Clore, Solution structure of the MEF2A-DNA complex: structural basis for the modulation of DNA bending and specificity by MADS-box transcription factors, EMBO J. 19, 2615–2628 (2000).
M. Allen, L. Varani and G. Varani, Nuclear magnetic resonance methods to study structure and dynamics of RNA-protein complexes, Methods Enzymol. 339, 357–376 (2001).
Zhihong Liu, Ingrid Luyten, M.J. Bottomley, A.C. Messias, S.H. Molango, R. Sprangers, K. Zanier, A. Kramer, M. Sattler,Structural Basis for Recognition of the Intron Branch Site RNA by Splicing Factor 1, Science 294, 1098 (2001).
D.T. Braddock, J.M. Louis, J.L. Baber, D. Levens and G.M. Clore, structure and dynamics of KH domains from FBP bound to single-stranded DNA, Nature 415, 1051–1056 (2002).
G. Varani, Y. Chen and T.C. Leeper, NMR studies of protein-nucleic acid interactions, Methods Mol. Biol. 278, 289–312 (2004).
A.M.J. Bonvin, R. Boelens and R. Kaptein, NMR analysis of protein interactions, Curr. Opinion Chem. Biol. 9, 501–508 (2005).
V. Calabro, M.D. Daugherty, and A.D. Frankel, A single intermolecular contact mediates intramolecular stabilization of both RNA and Protein, PNAS 102, 6849–6854 (2005).
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M.V. Rodnina, M. Beringer and W. Wintermeyer, Mechanism of peptide bond formation on the ribosome, Q. Rev. Biophysics 39, 203–225 (2006).
9.4 Books
W. Saenger, Principles of Nucleic Acid Structure, Springer Verlag, Heidelberg, 315 (1984).
T.M. Jovin, K. Rippe, N.B. Ramsing, R. Klement, W. Elhorst, and M. Vojtiskova, Structure and Methods, Vol. 3: DNA and RNA (R.H. Sarma and M.H. Sarma, eds.), Adenine Press, Schenectady, New York, 155 (1990).
V.A. Bloomfield, D. Crothers, I. Tinoco and J. Hearst, Nucleic Acids: Structures, Properties and Functions, University Science Books (2000).
D.L. Nelson and M.M. Cox, Lehninger Principles of Biochemistry, 3rd ed., W.H. Freeman & Company (2000).
B. Lewin, Genes, 7th edition, Oxford University Press (2000).
L. Stryer, J.M. Berg and J.L. Tymoczko, Biochemistry, 5th edition W.H.Freeman & Co Ltd. (2002).
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Chary, K., Govil, G. (2008). Biomolecular Interactions And Supramolecular Assemblies. In: Chary, K., Govil, G. (eds) NMR in Biological Systems. Focus on Structural Biology, vol 6. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6680-1_10
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