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Fungal Community for Novel Secondary Metabolites

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Recent Advancement in White Biotechnology Through Fungi

Part of the book series: Fungal Biology ((FUNGBIO))

Abstract

Natural products are important not only in the environment but also as useful compounds in various applications as in medicine or as phytopathogens. An enormous number of such compounds have been derived from fungal communities colonizing various habitats. Traditionally, the isolates of a fungal community have been explored as “biofactories” of novel bioactive substances, and they have not disappointed. Among the extracts and pure substances obtained from culture broths or fungal biomass, some have exerted antifungal and antibacterial activities ranging from moderate to powerful when tested on the pathogenic bacterial and fungal strains resistant to the antibiotics currently in use. Fungal communities that colonize the internal tissues of plants have been proven to produce a large number of structurally diverse novel secondary metabolites. Such as, the compound 3-O-methylfunicone isolated from Talaromyces sp., from mangrove environment, has shown antifungal, antitumor, and lipid-lowering properties. Petriella sp., an endophyte of the sponge Suberites domuncula produced a cyclic tetra peptide compound exhibited cytotoxicity against murine L5178Y lymphoma cells at an ED50 value of < 0.1 μg/ml. In this chapter, we reexamine the accumulated data on fungal communities isolated from plants and microbes that produce novel secondary metabolites with antimicrobial activity against plant and human pathogenic fungal and bacterial strains.

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References

  • Abreu AC, McBain AJ, Simoes M (2012) Plants as sources of new antimicrobials and resistance-modifying agents. Nat Prod Rep 29(9):1007–1021

    Article  CAS  PubMed  Google Scholar 

  • Alurappa R, Chowdappa S, Narayanaswamy R, Sinniah UR, Mohanty SK, Swamy MK (2018) Endophytic fungi and bioactive metabolites production: an update. In: Microbial Biotechnology. Springer, Singapore, pp 455–482

    Chapter  Google Scholar 

  • Arivudainambi UE, Anand TD, Shanmugaiah V, Karunakaran C, Rajendran A (2011) Novel bioactive metabolites producing endophytic fungus Colletotrichum gloeosporioides against multidrug-resistant Staphylococcus aureus. FEMS Immunol Med Microbiol 61(3):340–345

    Article  CAS  PubMed  Google Scholar 

  • Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3(10):3376

    Article  CAS  Google Scholar 

  • Barbieri DS, Tonial F, Lopez PV, Maia BHS, Santos GD, Ribas MO, Vicente VA (2014) Antiadherent activity of Schinus terebinthifolius and Croton urucurana extracts on in vitro biofilm formation of Candida albicans and Streptococcus mutans. Arch Oral Biol 59(9):887–896

    Article  PubMed  Google Scholar 

  • Bassman JH (2004) Ecosystem consequences of enhanced solar ultraviolet radiation: secondary plant metabolites as mediators of multiple trophic interactions in terrestrial plant communities. Photochem Photobiol 79(5):382–398

    Article  CAS  PubMed  Google Scholar 

  • Beck JJ (2012) Addressing the complexity and diversity of agricultural plant volatiles: a call for the integration of laboratory-and field-based analyses. J Agric Food Chem 60(5):1153–1157

    Article  CAS  PubMed  Google Scholar 

  • Bedi A, Adholeya A, Deshmukh SK (2018) Novel anticancer compounds from endophytic fungi. Curr Biotechnol 7(3):168–184

    Article  CAS  Google Scholar 

  • Benítez T, Rincón AM, Limón MC, Codon AC (2004) Biocontrol mechanisms of Trichoderma strains. Int Microbiol 7(4):249–260

    PubMed  Google Scholar 

  • Bérdy J (2005) Bioactive microbial metabolites. J Antibiot (Tokyo) 58(1):1

    Article  Google Scholar 

  • Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68(1):1–13

    Article  CAS  PubMed  Google Scholar 

  • Bezerra JD, Nascimento CC, Barbosa RDN, da Silva DC, Svedese VM, Silva-Nogueira EB, Souza-Motta CM (2015) Endophytic fungi from medicinal plant Bauhinia forficata: diversity and biotechnological potential. Braz J Microbiol 46(1):49–57

    Article  PubMed  PubMed Central  Google Scholar 

  • Bicchi C, Cordero C, Liberto E, Sgorbini B, Rubiolo P (2008) Headspace sampling of the volatile fraction of vegetable matrices. J Chromatogr 1184(1–2):220–233

    Article  CAS  Google Scholar 

  • Bills GF, Gloer JB, An Z (2013) Coprophilous fungi: antibiotic discovery and functions in an underexplored arena of microbial defensive mutualism. Curr Opin Microbiol 16(5):549–565

    Article  CAS  PubMed  Google Scholar 

  • Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Trethewey RN (2004) Potential of metabolomics as a functional genomics tool. Trends Plant Sci 9(9):418–425

    Article  CAS  PubMed  Google Scholar 

  • Bitas V, Kim HS, Bennett JW, Kang S (2013) Sniffing on microbes: diverse roles of microbial volatile organic compounds in plant health. Mol Plant Microbe Interact 26(8):835–843

    Article  CAS  PubMed  Google Scholar 

  • Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Plamann M (2004) Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol Rev 68(1):1–108

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brandt K, Mølgaard JP (2001) Organic agriculture: does it enhance or reduce the nutritional value of plant foods? J Sci Food Agric 81(9):924–931

    Article  CAS  Google Scholar 

  • Briard B, Heddergott C, Latgé JP (2016) Volatile compounds emitted by Pseudomonas aeruginosa stimulate growth of the fungal pathogen Aspergillus fumigatus. MBio 7(2):e00219–e00216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brown ED, Wright GD (2016) Antibacterial drug discovery in the resistance era. Nature 529(7586):336

    Article  CAS  PubMed  Google Scholar 

  • Cai L, Xu G, Shi C, Guo D, Wang X, Luo J (2015) Telodendrimer nanocarrier for co-delivery of paclitaxel and cisplatin: a synergistic combination nanotherapy for ovarian cancer treatment. Biomaterials 37:456–468

    Article  CAS  PubMed  Google Scholar 

  • Cardwell KF, Kling JG, Maziya-Dixon B, Bosque-Perez NA (2000) Interactions between Fusarium verticillioides, Aspergillus flavus, and insect infestation in four maize genotypes in lowland Africa. Phytopathology 90(3):276–284

    Article  CAS  PubMed  Google Scholar 

  • Carey JR, Suslick KS, Hulkower KI, Imlay JA, Imlay KR, Ingison CK, Wittrig AE (2011) Rapid identification of bacteria with a disposable colorimetric sensing array. J Am Chem Soc 133(19):7571–7576

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carvalho JM, Paixão LKOD, Dolabela MF, Marinho PSB, Marinho AMDR (2016) Phytosterols isolated from endophytic fungus Colletotrichum gloeosporioides (Melanconiaceae). Acta Amaz 46(1):69–72

    Article  Google Scholar 

  • Cellini A, Biondi E, Blasioli S, Rocchi L, Farneti B, Braschi I, Spinelli F (2016) Early detection of bacterial diseases in apple plants by analysis of volatile organic compounds profiles and use of electronic nose. Ann Appl Biol 168(3):409–420

    Article  CAS  Google Scholar 

  • Chabner BA, Roberts TG Jr (2005) Chemotherapy and the war on cancer. Nat Rev Cancer 5(1):65

    Article  CAS  PubMed  Google Scholar 

  • Chagas FO, de Cassia Pessotti R, Caraballo-Rodríguez AM, Pupo MT (2018) Chemical signaling involved in plant–microbe interactions. Chem Soc Rev 47(5):1652–1704

    Article  CAS  PubMed  Google Scholar 

  • Chaturvedi P (2015) Characterization of foliar endophytic fungi from Centella asiatica (L.) urban as a promising source of bioactive metabolites (Doctoral dissertation, GB Pant University of Agriculture and Technology, Pantnagar-263145)

    Google Scholar 

  • Chakravarty K, Gaur S (2018) Fungal endophytes as novel sources of anticancer compounds. In: Anticancer plants: natural products and biotechnological implements. Springer, Singapore, pp 1–18

    Google Scholar 

  • Chan EM, Mathies RA, Alivisatos AP (2003) Size-controlled growth of CdSe nanocrystals in microfluidic reactors. Nano Lett 3(2):199–201

    Article  CAS  Google Scholar 

  • Chandler D, Davidson G, Grant WP, Greaves J, Tatchell GM (2008) Microbial biopesticides for integrated crop management: an assessment of environmental and regulatory sustainability. Trends Food Sci Technol 19(5):275–283

    Article  CAS  Google Scholar 

  • Chandra P, Singh E (2016) Applications and mechanisms of plant growth-stimulating rhizobacteria. In: Plant–microbe interaction: an approach to sustainable agriculture. Springer, Singapore, pp 37–62

    Chapter  Google Scholar 

  • Chang Q, Wang W, Regev-Yochay G, Lipsitch M, Hanage WP (2015) Antibiotics in agriculture and the risk to human health: how worried should we be? Evol Appl 8(3):240–247

    Article  PubMed  Google Scholar 

  • Clay K (1988) Fungal endophytes of grasses: a defensive mutualism between plants and fungi. Ecology 69(1):10–16

    Article  Google Scholar 

  • Cohen P (2002) Protein kinases–the major drug targets of the twenty-first century? Nat Rev Drug Discov 1(4):309

    Article  CAS  PubMed  Google Scholar 

  • Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71(9):4951–4959

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Conrad KA, Rodriguez R, Salcedo EC, Rauceo JM (2018) The Candida albicans stress response gene Stomatin-Like Protein 3 is implicated in ROS-induced apoptotic-like death of yeast phase cells. PLoS One 13(2):e0192250

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cowan MM (1999) Plant products as antimicrobial agents. Clin Microbiol Rev 12(4):564–582

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cragg GM, Newman DJ (2013) Natural products: a continuing source of novel drug leads. Biochim Biophys Acta (BBA)-General Subject 1830(6):3670–3695

    Article  CAS  Google Scholar 

  • Dang L, Li G, Yang Z, Luo S, Zheng X, Zhang K (2010) Chemical constituents from the endophytic fungus Trichoderma ovalisporum isolated from Panax notoginseng. Ann Microbiol 60(2):317–320

    Article  CAS  Google Scholar 

  • Darabpour E, Ardakani MR, Motamedi H, Ronagh MT (2012) Isolation of a potent antibiotic producer bacterium, especially against MRSA, from northern region of the Persian Gulf. Bosn J Basic Med Sci 12(2):108

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • David F, Sandra P (2007) Stir bar sorptive extraction for trace analysis. J Chromatogr 1152(1–2):54–69

    Article  CAS  Google Scholar 

  • Dayan FE, Cantrell CL, Duke SO (2009) Natural products in crop protection. Bioorg Med Chem 17(12):4022–4034

    Article  CAS  PubMed  Google Scholar 

  • De Carvalho MP, Türck P, Abraham WR (2015) Secondary metabolites control the associated bacterial communities of saprophytic basidiomycotina fungi. Microbes Environ 30(2):196–198

    Article  PubMed  PubMed Central  Google Scholar 

  • De la Rosa-García SC, Fuentes AF, Gómez-Cornelio S, Zagada-Domínguez U, Quintana P (2018) Structural characterization of antifungal CaZn2 (OH)6 2H2O nanoparticles obtained via mechanochemical processing. J Mater Sci 53:13758–13768

    Article  CAS  Google Scholar 

  • De Siqueira VM, Conti R, de Araújo JM, Souza-Motta CM (2011) Endophytic fungi from the medicinal plant Lippia sidoides Cham and their antimicrobial activity. Symbiosis 53(2):89–95

    Article  CAS  Google Scholar 

  • De Vries FT, Shade A (2013) Controls on soil microbial community stability under climate change. Front Microbiol 4:265

    Article  PubMed  PubMed Central  Google Scholar 

  • Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Read ND (2005) The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434(7036):980

    Article  CAS  PubMed  Google Scholar 

  • Debbab A, Aly AH, Lin WH, Proksch P (2010) Bioactive compounds from marine bacteria and fungi. J Microbial Biotechnol 3(5):544–563

    Article  CAS  Google Scholar 

  • Deepika VB, Murali TS, Satyamoorthy K (2016) Modulation of genetic clusters for synthesis of bioactive molecules in fungal endophytes: a review. Microbiol Res 182:125–140

    Article  CAS  PubMed  Google Scholar 

  • Demain AL, Vandamme EJ, Collins J, Buchholz K (2017) History of industrial biotechnology. Indust Biotechnol Microorganism 1:1–84

    Google Scholar 

  • Deshmukh SK, Verekar SA, Bhave SV (2015) Endophytic fungi: a reservoir of antibacterials. Front Microbiol 5:715

    Article  PubMed  PubMed Central  Google Scholar 

  • Dettmer K, Aronov PA, Hammock BD (2007) Mass spectrometry-based metabolomics. Mass Spectrom Rev 26(1):51–78

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dhillon GS, Brar SK, Verma M, Tyagi RD (2011) Recent advances in citric acid bio-production and recovery. Food Bioproc Tech 4(4):505–529

    Article  CAS  Google Scholar 

  • Ding G, Wang H, Li L, Song B, Chen H, Zhang H, Zou Z (2014) Trichodermone, a spiro-cytochalasan with a tetracyclic nucleus (7/5/6/5) skeleton from the plant endophytic fungus Trichoderma gamsii. J Nat Prod 77(1):164–167

    Article  CAS  PubMed  Google Scholar 

  • Dissanayake RK, Ratnaweera PB, Williams DE, Wijayarathne CD, Wijesundera RL, Andersen RJ, de Silva ED (2016) Antimicrobial activities of endophytic fungi of the Sri Lankan aquatic plant Nymphaea nouchali and chaetoglobosin A and C, produced by the endophytic fungus Chaetomium globosum. Mycology 7(1):1–8

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dokuparthi SK, Manikanta P (2015) Phytochemical and pharmacological studies on Chrysanthemum coronarium L.: a review. J Drug Discov Ther 27:11–16

    Google Scholar 

  • Douwes J, Thorne P, Pearce N, Heederik D (2003) Bioaerosol health effects and exposure assessment: progress and prospects. Ann Occup Hyg 47(3):187–200

    CAS  PubMed  Google Scholar 

  • Ebrahim W, Kjer J, El Amrani M, Wray V, Lin W, Ebel R, Proksch P (2012) Pullularins E and F, two new peptides from the endophytic fungus Bionectria ochroleuca isolated from the mangrove plant Sonneratia caseolaris. Mar Drugs 10(5):1081–1091

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Effmert U, Kalderás J, Warnke R, Piechulla B (2012) Volatile mediated interactions between bacteria and fungi in the soil. J Chem Ecol 38(6):665–703

    Article  CAS  PubMed  Google Scholar 

  • Eisenstein BI (1990) The polymerase chain reaction: a new method of using molecular genetics for medical diagnosis. J Med 322(3):178–183

    CAS  Google Scholar 

  • El Sheikha AF, Levin RE, Xu J (2018) Molecular techniques in food biology: safety, biotechnology, authenticity and traceability. Wiley, New York, pp 241–254

    Book  Google Scholar 

  • Elavarasi A, Rathna GS, Kalaiselvam M (2012) Taxol producing mangrove endophytic fungi Fusarium oxysporum from Rhizophora annamalayana. Asian Pac J Trop Biomed 2(2):1081–1085

    Article  Google Scholar 

  • El-Hasan A, Buchenauer H (2009) Actions of 6-pentyl-alpha-pyrone in controlling seedling blight incited by Fusarium moniliforme and inducing defence responses in maize. J Phytopathol 157(11–12):697–707

    Article  CAS  Google Scholar 

  • Enespa, Chandra P (2017) Microbial volatiles as chemical weapons against pathogenic fungi. In: Volatiles and food security. Springer, Singapore, pp 227–254

    Chapter  Google Scholar 

  • Ens EJ, Bremner JB, French K, Korth J (2009) Identification of volatile compounds released by roots of an invasive plant, bitou bush (Chrysanthemoides monilifera spp. rotundata), and their inhibition of native seedling growth. Biol Invasions 11(2):275–287

    Article  Google Scholar 

  • Ezra D, Hess WM, Strobel GA (2004) New endophytic isolates of Muscodor albus, a volatile-antibiotic-producing fungus. Microbiology 150(12):4023–4031

    Article  CAS  PubMed  Google Scholar 

  • Farrar K, Bryant D, Cope-Selby N (2014) Understanding and engineering beneficial plant–microbe interactions: plant growth promotion in energy crops. Plant Biotechnol J 12(9):1193–1206

    Article  PubMed  PubMed Central  Google Scholar 

  • Fialho MB, Toffano L, Pedroso MP, Augusto F, Pascholati SF (2010) Volatile organic compounds produced by Saccharomyces cerevisiae inhibit the in vitro development of Guignardia citricarpa, the causal agent of citrus black spot. World J Microbiol Biotechnol 26(5):925–932

    Article  CAS  Google Scholar 

  • Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L (2000) Metabolite profiling for plant functional genomics. Nature Biotechnol 18(11):1157

    Article  CAS  Google Scholar 

  • Firáková S, Šturdíková M, Múčková M (2007) Bioactive secondary metabolites produced by microorganisms associated with plants. Biologia 62(3):251–257

    Article  CAS  Google Scholar 

  • Fraser PD, Pinto MES, Holloway DE, Bramley PM (2000) Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J 24(4):551–558

    Article  CAS  PubMed  Google Scholar 

  • Frey-Klett P, Burlinson P, Deveau A, Barret M, Tarkka M, Sarniguet A (2011) Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiol Mol Biol Rev 75(4):583–609

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fu XR, Sun ZC, Zhang MZ (2012) Experimental study of extract from Prunella vulgaris inducing B, T lymphoma cell apoptosis. Zhong Yao Cai= Zhongyaocai (J Chin Med Mat) 35(3):433–438

    Google Scholar 

  • Gao H, Li G, Lou HX (2018) Structural diversity and biological activities of novel secondary metabolites from endophytes. Molecules 23(3):646

    Article  CAS  PubMed Central  Google Scholar 

  • Gao J, Chen L, Yuan K, Huang H, Yan Z (2013) Ionic liquid pretreatment to enhance the anaerobic digestion of lignocellulosic biomass. Bioresour Technol 150:352–358

    Article  CAS  PubMed  Google Scholar 

  • Gao P, Xu G (2015) Mass-spectrometry-based microbial metabolomics: recent developments and applications. Anal Bioanal Chem 407(3):669–680

    Article  CAS  PubMed  Google Scholar 

  • Gao Z, Zhang B, Liu H, Han J, Zhang Y (2017) Identification of endophytic Bacillus velezensis ZSY-1 strain and antifungal activity of its volatile compounds against Alternaria solani and Botrytis cinerea. Biol Control 105:27–39

    Article  Google Scholar 

  • Gerke J, Braus GH (2014) Manipulation of fungal development as source of novel secondary metabolites for biotechnology. Appl Microbiol Biotechnol 98(20):8443–8845

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Giannoukos S, Marshall A, Taylor S, Smith J (2017) Molecular communication over gas stream channels using portable mass spectrometry. J Am Soc Mass Spectrom 28(11):2371–2383

    Article  CAS  PubMed  Google Scholar 

  • Gnansounou E, Alves CM, Raman JK (2017) Multiple applications of vetiver grass–a review. Int J Environ Sci 2:125–141

    Google Scholar 

  • Gómez-Rivera A, González-Cortazar M, Herrera-Ruíz M, Zamilpa A, Rodríguez-López V (2018) Sessein and isosessein with anti-inflammatory, antibacterial and antioxidant activity isolated from Salvia sessei Benth. J Ethnopharmacol 217:212–219

    Article  CAS  PubMed  Google Scholar 

  • Gopalakrishnan S, Pande S, Sharma M, Humayun P, Kiran BK, Sandeep D, Rupela O (2011) Evaluation of actinomycete isolates obtained from herbal vermicompost for the biological control of Fusarium wilt of chickpea. Crop Prot 30(8):1070–1078

    Article  CAS  Google Scholar 

  • Greve H, Mohamed IE, Pontius A, Kehraus S, Gross H, König GM (2010) Fungal metabolites: structural diversity as incentive for anticancer drug development. Phytochem Rev 9(4):537–545

    Article  CAS  Google Scholar 

  • Güllüce M, Sökmen M, Daferera D, Aǧar G, Özkan H, Kartal N, Şahin F (2003) In vitro antibacterial, antifungal, and antioxidant activities of the essential oil and methanol extracts of herbal parts and callus cultures of Satureja hortensis L. J Agric Food Chem 51(14):3958–3965

    Google Scholar 

  • Gunatilaka AL (2006) Natural products from plant-associated microorganisms: distribution, structural diversity, bioactivity, and implications of their occurrence. J Nat Prod 69(3):509–526

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gutiérrez HR, Perea-López N, Elías AL, Berkdemir A, Wang B, Lv R, Terrones M (2012) Extraordinary room-temperature photoluminescence in triangular WS2 monolayers. Nano Lett 13(8):3447–3454

    Article  CAS  PubMed  Google Scholar 

  • Hajslova J, Cajka T, Vaclavik L (2011) Challenging applications offered by direct analysis in real time (DART) in food-quality and safety analysis. Trends Analyt Chem 30(2):204–218

    Article  CAS  Google Scholar 

  • Hamelinck CN, Van Hooijdonk G, Faaij AP (2005) Ethanol from lignocellulosic biomass: techno-economic performance in short-, middle-and long-term. Biomass Bioenergy 28(4):384–410

    Article  CAS  Google Scholar 

  • Harvey AL (2008) Natural products in drug discovery. Drug Discov Today 13(19–20):894–901

    Article  CAS  PubMed  Google Scholar 

  • Harvey SG, Sams CE (2000) 401 effects of allyl isothiocyanate on mycelial growth from germinating sclerotia of Sclerotium rolfsii. Hortic Sci 35(3):462–462

    Google Scholar 

  • Heitefuss R (2011) Management of fungal plant pathogens. J Phytopathol 159(2):136–136

    Article  Google Scholar 

  • Herms DA, Mattson WJ (1992) The dilemma of plants: to grow or defend. Q Rev Biol 67(3):283–335

    Article  Google Scholar 

  • Hock OG, Cheng HC, Fang VLB, Yong WY, Shing WL (2018) Isolation and identification of potential fungal species for spent engine lubrication oil remediation in Peninsular Malaysia. Remediat J 28(3):91–95

    Article  Google Scholar 

  • Hu Q, Sommerfeld M, Jarvis E, Ghirardi M, Posewitz M, Seibert M, Darzins A (2008) Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. Plant J 54(4):621–639

    Article  CAS  PubMed  Google Scholar 

  • Hyde KD, Soytong K (2008) The fungal endophyte dilemma. Fungal Divers 33(163):173

    Google Scholar 

  • Ichikawa S (1971) Peristalsis. Nihon seirigaku zasshi. J Phys Soc Jpn 33(1):116–125

    CAS  Google Scholar 

  • Ip M, Lui SL, Poon VK, Lung I, Burd A (2006) Antimicrobial activities of silver dressings: an in vitro comparison. J Med Microbiol 55(1):59–63

    Article  CAS  PubMed  Google Scholar 

  • Jeleń HH, Grabarkiewicz-Szczȩsna J (2005) Volatile compounds of Aspergillus strains with different abilities to produce ochratoxin A. J Agric Food Chem 53(5):1678–1683

    Article  CAS  PubMed  Google Scholar 

  • Ji S, Xu W, Yang M, Yu K (2013) 3D convolutional neural networks for human action recognition. IEEE Trans Pattern Anal Mach Intell 35(1):221–231

    Article  PubMed  Google Scholar 

  • Jiménez-Romero C, Rodríguez AD, Nam S (2017) Plakortinic acids A and B: cytotoxic cycloperoxides with a bicyclo [4.2. 0] octene unit from sponges of the genera Plakortis and Xestospongia. Org Lett 19(6):1486–1489

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jurado M, López MJ, Suárez-Estrella F, Vargas-García MC, López-González JA, Moreno J (2014) Exploiting composting biodiversity: study of the persistent and biotechnologically relevant microorganisms from lignocellulose-based composting. Bioresour Technol 162:283–293

    Article  CAS  PubMed  Google Scholar 

  • Kai M, Crespo E, Cristescu SM, Harren FJ, Francke W, Piechulla B (2010) Serratia odorifera: analysis of volatile emission and biological impact of volatile compounds on Arabidopsis thaliana. Appl Microbiol Biotechnol 88(4):965–976

    Article  CAS  PubMed  Google Scholar 

  • Kanchiswamy CN, Malnoy M, Maffei ME (2015) Chemical diversity of microbial volatiles and their potential for plant growth and productivity. Front Plant Sci 6(151):1–23

    Google Scholar 

  • Karaman I, Şahin F, Güllüce M, Öǧütçü H, Şengül M, Adıgüzel A (2003) Antimicrobial activity of aqueous and methanol extracts of Juniperus oxycedrus L. J Ethnopharmacol 85(2-3):231–235

    Article  CAS  PubMed  Google Scholar 

  • Kaul S, Gupta S, Ahmed M, Dhar MK (2012) Endophytic fungi from medicinal plants: a treasure hunt for bioactive metabolites. Phytochem Rev 11(4):487–505

    Article  CAS  Google Scholar 

  • Kesting JR, Olsen L, Staerk D, Tejesvi MV, Kini KR, Prakash HS, Jaroszewski JW (2011) Production of unusual dispiro metabolites in Pestalotiopsis virgatula endophyte cultures: HPLC-SPE-NMR, electronic circular dichroism, and time-dependent density-functional computation study. J Nat Prod 74(10):2206–2215

    Article  CAS  PubMed  Google Scholar 

  • Kettering M, Valdivia C, Sterner O, Anke H, Thines E (2005) Heptemerones A–G, seven novel diterpenoids from Coprinus heptemerus: producing organism, fermentation, isolation and biological activities. J Antibiot (Tokyo) 58(6):390

    Article  CAS  Google Scholar 

  • Khan R, Shahzad S, Choudhary MI, Khan SA, Ahmad A (2010) Communities of endophytic fungi in medicinal plant Withania somnifera. Pak J Bot 42(2):1281–1287

    Google Scholar 

  • Kharwar RN, Verma VC, Kumar A, Gond SK, Harper JK, Hess WM, Strobel GA (2009) Javanicin, an antibacterial naphthaquinone from an endophytic fungus of neem, Chloridium sp. Curr Microbiol 58(3):233–238

    Article  CAS  PubMed  Google Scholar 

  • Khater HF (2012) Prospects of botanical biopesticides in insect pest management. Pharmacologia 3(12):641–656

    Article  Google Scholar 

  • Kjer J, Wray V, Edrada-Ebel R, Ebel R, Pretsch A, Lin W, Proksch P (2009) Xanalteric acids I and II and related phenolic compounds from an endophytic Alternaria sp. isolated from the mangrove plant Sonneratia alba. J Nat Prod 72(11):2053–2057

    Article  CAS  PubMed  Google Scholar 

  • Knight V, Sanglier JJ, DiTullio D, Braccili S, Bonner P, Waters J, Zhang L (2003) Diversifying microbial natural products for drug discovery. Appl Microbiol Biotechnol 62(5-6):446–458

    Article  CAS  PubMed  Google Scholar 

  • Koitabashi M (2005) New biocontrol method for parsley powdery mildew by the antifungal volatiles-producing fungus Kyu-W63. J Gen Plant Pathol 71(4):280–284

    Article  CAS  Google Scholar 

  • Kulbe H, Levinson NR, Balkwill F, Wilson JL (2004) The chemokine network in cancer: much more than directing cell movement. Int J Dev Biol 48(5-6):489–496

    Article  CAS  PubMed  Google Scholar 

  • Kumar S, Kaushik N (2012) Metabolites of endophytic fungi as novel source of biofungicide: a review. Phytochem Rev 11(4):507–522

    Article  CAS  Google Scholar 

  • Kusari S, Hertweck C, Spiteller M (2012) Chemical ecology of endophytic fungi: origins of secondary metabolites. Chem Biol 19(7):792–798

    Article  CAS  PubMed  Google Scholar 

  • Kusari S, Pandey SP, Spiteller M (2013) Untapped mutualistic paradigms linking host plant and endophytic fungal production of similar bioactive secondary metabolites. Phytochemistry 91:81–87

    Article  CAS  PubMed  Google Scholar 

  • Lange BM (2015) The evolution of plant secretory structures and emergence of terpenoid chemical diversity. Annu Rev Plant Biol 66:139–159

    Article  CAS  PubMed  Google Scholar 

  • Lavermicocca P, Valerio F, Evidente A, Lazzaroni S, Corsetti A, Gobbetti M (2000) Purification and characterization of novel antifungal compounds from the sourdough Lactobacillus plantarum strain 21B. Appl Environ Microbiol 66(9):4084–4090

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee SYJ (2015) Analysis of volatile organic compounds emitted by filamentous fungi and volatile-mediated plant growth. Doctoral dissertation. Rutgers University, Graduate School, New Brunswick

    Google Scholar 

  • Leelasuphakul W, Hemmanee P, Chuenchitt S (2008) Growth inhibitory properties of Bacillus subtilis strains and their metabolites against the green mold pathogen (Penicillium digitatum Sacc.) of citrus fruit. Postharvest Biol Technol 48(1):113–121

    Article  CAS  Google Scholar 

  • Leff JW, Fierer N (2008) Volatile organic compound (VOC) emissions from soil and litter samples. Soil Biol Biochem 40(7):1629–1636

    Article  CAS  Google Scholar 

  • Letai A, Coulombe PA, Fuchs E (1992) Do the ends justify the mean? Proline mutations at the ends of the keratin coiled-coil rod segment are more disruptive than internal mutations. J Cell Biol 116(5):1181–1195

    Article  CAS  PubMed  Google Scholar 

  • Leveau JH, Preston GM (2008) Bacterial mycophagy: definition and diagnosis of a unique bacterial–fungal interaction. New Phytol 177(4):859–876

    Article  PubMed  Google Scholar 

  • Li JWH, Vederas JC (2009) Drug discovery and natural products: end of an era or an endless frontier. Science 325(5937):161–165

    Article  CAS  PubMed  Google Scholar 

  • Li P, Lou J, Mou Y, Sun W, Shan T, Zhou L (2012) Effects of oligosaccharide elicitors from endophytic Fusarium oxysporum Dzf17 on diosgenin accumulation in Dioscorea zingiberensis seedling cultures. J Med Plant Res 6(38):5128–5134

    Article  CAS  Google Scholar 

  • Li X, Pan Z (2014) Dry-peeling of tomato by infrared radiative heating: part I. Model development. Food Biol Technol 7(7):1996–2004

    Google Scholar 

  • Li Y, Song YC, Liu JY, Ma YM, Tan RX (2005) Anti-Helicobacter pylori substances from endophytic fungal cultures. World J Microbiol Biotechnol 21(4):553–558

    Article  CAS  Google Scholar 

  • Lin S, Koh JJ, Aung TT, Lim F, Li J, Zou H, Tan DT (2017) Symmetrically substituted xanthone amphiphiles combat gram-positive bacterial resistance with enhanced membrane selectivity. J Med Chem 60(4):1362–1378

    Article  CAS  PubMed  Google Scholar 

  • Liu JY, Song YC, Zhang Z, Wang L, Guo ZJ, Zou WX, Tan RX (2004) Aspergillus fumigatus CY018, an endophytic fungus in Cynodon dactylon as a versatile producer of new and bioactive metabolites. J Biotechnol 114(3):279–287

    Article  CAS  PubMed  Google Scholar 

  • Liu K, Ding X, Deng B, Chen W (2009) Isolation and characterization of endophytic taxol-producing fungi from Taxus chinensis. J Ind Microbiol Biotechnol 36(9):1171

    Article  CAS  PubMed  Google Scholar 

  • Liu L, Niu S, Lu X, Chen X, Zhang H, Guo L, Che Y (2010) Unique metabolites of Pestalotiopsis fici suggest a biosynthetic hypothesis involving a Diels–Alder reaction and then mechanistic diversification. Chem Commun 46(3):460–462

    Article  CAS  Google Scholar 

  • Liu X, Dong M, Chen X, Jiang M, Lv X, Zhou J (2008) Antimicrobial activity of an endophytic Xylaria sp. YX-28 and identification of its antimicrobial compound 7-amino-4-methylcoumarin. Appl Microbiol Biotechnol 78(2):241–247

    Article  CAS  PubMed  Google Scholar 

  • López-González JA, Suárez-Estrella F, Vargas-García MC, López MJ, Jurado MM, Moreno J (2015) Dynamics of bacterial microbiota during lignocellulosic waste composting: studies upon its structure, functionality and biodiversity. Bioresour Technol 175:406–416

    Article  CAS  PubMed  Google Scholar 

  • Lorenz P, Eck J (2005) Metagenomics and industrial applications. Nat Rev Microbiol 3(6):510

    Article  CAS  PubMed  Google Scholar 

  • Lu H, Zou WX, Meng JC, Hu J, Tan RX (2000) New bioactive metabolites produced by Colletotrichum sp., an endophytic fungus in Artemisia annua. Plant Sci 151(1):67–73

    Article  CAS  Google Scholar 

  • Ma YM, Li Y, Liu JY, Song YC, Tan RX (2004) Anti-Helicobacter pylori metabolites from Rhizoctonia sp. Cy064, an endophytic fungus in Cynodon dactylon. Fitoterapia 75(5):451–456

    Article  CAS  PubMed  Google Scholar 

  • Macheleidt J, Mattern DJ, Fischer J, Netzker T, Weber J, Schroeckh V, Brakhage AA (2016) Regulation and role of fungal secondary metabolites. Annu Rev Genet 50:371–392

    Article  CAS  PubMed  Google Scholar 

  • Mapari SA, Thrane U, Meyer AS (2010) Fungal polyketide azaphilone pigments as future natural food colorants? Trends Biotechnol 28(6):300–307

    Article  CAS  PubMed  Google Scholar 

  • Martinez-Klimova E, Rodriguez-Pena K, Sánchez S (2017) Endophytes as sources of antibiotics. Biochem Pharmacol 134:1–17

    Article  CAS  PubMed  Google Scholar 

  • Mégraud F, Lehours P (2007) Helicobacter pylori detection and antimicrobial susceptibility testing. Clin Microbiol Rev 20(2):280–322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Meldrum C, Doyle MA, Tothill RW (2011) Next-generation sequencing for cancer diagnostics: a practical perspective. Clin Biochem Rev 32(4):177

    PubMed  PubMed Central  Google Scholar 

  • Meng LH, Li XM, Liu Y, Wang BG (2014) Penicibilaenes A and B, sesquiterpenes with a tricyclo [6.3. 1.01, 5] dodecane skeleton from the marine isolate of Penicillium bilaiae MA-267. Org Lett 16(23):6052–6055

    Article  CAS  PubMed  Google Scholar 

  • Milgram BC, Eskildsen K, Richter SM, Scheidt WR, Scheidt KA (2007) Microwave-assisted Piloty−Robinson synthesis of 3,4-disubstituted pyrroles. J Org Chem 72(10):3941–3944

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Miller KP, Wang L, Benicewicz BC, Decho AW (2015) Inorganic nanoparticles engineered to attack bacteria. Chem Soc Rev 44(21):7787–7807

    Article  CAS  PubMed  Google Scholar 

  • Molitor D, Liermann JC, Berkelmann-Löhnertz B, Buckel I, Opatz T, Thines E (2012) Phenguignardic acid and guignardic acid, phytotoxic secondary metabolites from Guignardia bidwellii. J Nat Prod 75(7):1265–1269

    Article  CAS  PubMed  Google Scholar 

  • Monggoot S, Popluechai S, Gentekaki E, Pripdeevech P (2017) Fungal endophytes: an alternative source for production of volatile compounds from agarwood oil of Aquilaria subintegra. Microb Ecol 74(1):54–61

    Article  CAS  PubMed  Google Scholar 

  • Morath SU, Hung R, Bennett JW (2012) Fungal volatile organic compounds: a review with emphasis on their biotechnological potential. Fungal Biol Rev 26(2-3):73–83

    Article  Google Scholar 

  • Moree WJ, Phelan VV, Wu CH, Bandeira N, Cornett DS, Duggan BM, Dorrestein PC (2012) Interkingdom metabolic transformations captured by microbial imaging mass spectrometry. Proc Natl Acad Sci U S A 109(34):13811–13816

    Article  PubMed  PubMed Central  Google Scholar 

  • Muharini R, Díaz A, Ebrahim W, Mándi A, Kurtán T, Rehberg N, Liu Z (2017) Antibacterial and cytotoxic phenolic metabolites from the fruits of Amorpha fruticosa. J Nat Prod 80(1):169–180

    Article  CAS  PubMed  Google Scholar 

  • Munaganti RK, Muvva V, Konda S, Naragani K, Mangamuri UK, Dorigondla KR, Akkewar D (2016) Antimicrobial profile of Arthrobacter kerguelensis VL-RK-09 isolated from mango orchards. Braz J Microbiol 47(4):1030–1038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Muniyan R, Gurunathan J (2016) Lauric acid and myristic acid from Allium sativum inhibit the growth of Mycobacterium tuberculosis H37Ra: in silico analysis reveals possible binding to protein kinase B. Pharm Biol 54(12):2814–2821

    Article  CAS  PubMed  Google Scholar 

  • Murooka Y, Yamshita M (2008) Traditional healthful fermented products of Japan. J Ind Microbiol Biotechnol 35(8):791

    Article  CAS  PubMed  Google Scholar 

  • Nandi CO, Ebiloma GU, Black JA, Nwodo NJ, Lemgruber L, Schmidt TJ, De Koning HP (2019) Potent Antitrypanosomal activities of 3-Aminosteroids against African Trypanosomes: investigation of cellular effects and of cross-resistance with existing drugs. Molecules 24(2):268

    Article  CAS  Google Scholar 

  • Naznin HA, Kiyohara D, Kimura M, Miyazawa M, Shimizu M, Hyakumachi M (2014) Systemic resistance induced by volatile organic compounds emitted by plant growth-promoting fungi in Arabidopsis thaliana. PLoS One 9(1):e86882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nisa H, Kamili AN, Nawchoo IA, Shafi S, Shameem N, Bandh SA (2015) Fungal endophytes as prolific source of phytochemicals and other bioactive natural products: a review. Microb Pathog 82:50–59

    Article  CAS  PubMed  Google Scholar 

  • Nishino S, Parada RY, Ichiyanagi T, Maekawa N, Shimomura N, Otani H (2013) 1-Phenyl-3-pentanone, a volatile compound from the edible mushroom Mycoleptodonoides aitchisonii active against some phytopathogenic fungi. J Phytopathol 161(7-8):515–521

    Article  CAS  Google Scholar 

  • Oerke EC (2006) Crop losses to pests. J Agric Sci 144(1):31–43

    Article  Google Scholar 

  • Oka K, Ishihara A, Sakaguchi N, Nishino S, Parada RY, Nakagiri A, Otani H (2015) Antifungal activity of volatile compounds produced by an edible mushroom Hypsizygus marmoreus against phytopathogenic fungi. J Phytopathol 163(11-12):987–996

    Article  CAS  Google Scholar 

  • Paladini F, Pollini M, Sannino A, Ambrosio L (2015) Metal-based antibacterial substrates for biomedical applications. Biomacromolecules 16(7):1873–1885

    Article  CAS  PubMed  Google Scholar 

  • Pan F, Su TJ, Cai SM, Wu W (2017) Fungal endophyte-derived Fritillaria unibracteata var. wabuensis: diversity, antioxidant capacities in vitro and relations to phenolic, flavonoid or saponin compounds. Sci Rep 7:42008

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Papagianni M (2004) Fungal morphology and metabolite production in submerged mycelial processes. Biotechnol Adv 22(3):189–259

    Article  CAS  PubMed  Google Scholar 

  • Perkowski J, Buśko M, Chmielewski J, Góral T, Tyrakowska B (2008) Content of trichodiene and analysis of fungal volatiles (electronic nose) in wheat and triticale grain naturally infected and inoculated with Fusarium culmorum. Int J Food Microbiol 126(1-2):127–134

    Article  CAS  PubMed  Google Scholar 

  • Pettit GR, Meng Y, Pettit RK, Herald DL, Cichacz ZA, Doubek DL, Richert L (2009) Antineoplastic agents. 556. Isolation and structure of Coprinastatin 1 from Coprinus cinereus. J Nat Prod 73(3):388–392

    Article  CAS  Google Scholar 

  • Proksch P, Putz A, Ortlepp S, Kjer J, Bayer M (2010) Bioactive natural products from marine sponges and fungal endophytes. Phytochem Rev 9(4):475–489

    Article  CAS  Google Scholar 

  • Pu X, Qu X, Chen F, Bao J, Zhang G, Luo Y (2013) Camptothecin-producing endophytic fungus Trichoderma atroviride LY357: isolation, identification, and fermentation conditions optimization for camptothecin production. Appl Microbiol Biotechnol 97(21):9365–9375

    Article  CAS  PubMed  Google Scholar 

  • Qin S, Xing K, Jiang JH, Xu LH, Li WJ (2011) Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria. Appl Microbiol Biotechnol 89(3):457–473

    Article  CAS  PubMed  Google Scholar 

  • Radić N, Štrukelj B (2012) Endophytic fungi. The treasure chest of antibacterial substances. Phytomedicine 19(14):1270–1284

    Article  PubMed  Google Scholar 

  • Radji M, Sumiati A, Rachmayani R, Elya B (2011) Isolation of fungal endophytes from Garcinia mangostana and their antibacterial activity. Afr J Biotechnol 10(1):103–107

    Google Scholar 

  • Ramasamy K, Lim SM, Bakar HA, Ismail N, Ismail MS, Ali MF, Cole AL (2010) Antimicrobial and cytotoxic activities of Malaysian endophytes. Phytother Res Int J Pharma Toxicol Eva Nat Prod Derivat 24(5):640–643

    Google Scholar 

  • Rana KL, Kour D, Sheikh I, Yadav N, Yadav AN, Kumar V, Singh BP, Dhaliwal HS, Saxena AK (2018a) Biodiversity of endophytic fungi from diverse niches and their biotechnological applications. In: Singh BP (ed) Advances in endophytic fungal research. Springer, Cham. https://doi.org/10.1007/978-3-030-03589-1_6

    Chapter  Google Scholar 

  • Rana KL, Kour D, Yadav AN (2018b) Endophytic microbiomes: biodiversity, ecological significance and biotechnological applications. Res J Biotechnol 14:1–30

    Google Scholar 

  • Rana KL, Kour D, Yadav AN, Kumar V, Dhaliwal HS (2016) Biotechnological applications of endophytic microbes associated with barley (Hordeum vulgare L.) growing in Indian Himalayan regions. In: Proceedings of 86th Annual Session of NASI & Symposium on “Science, Technology and Entrepreneurship for Human Welfare in The Himalayan Region”, p 80

    Google Scholar 

  • Reverberi M, Ricelli A, Zjalic S, Fabbri AA, Fanelli C (2010) Natural functions of mycotoxins and control of their biosynthesis in fungi. Appl Microbiol Biotechnol 87(3):899–911

    Article  CAS  PubMed  Google Scholar 

  • Ridgway K, Lalljie SP, Smith RM (2010) Analysis of food taints and off-flavours: a review. Food Addit Contam 27(2):146–168

    Article  CAS  Google Scholar 

  • Rios JL, Recio MC (2005) Medicinal plants and antimicrobial activity. J Ethnopharmacol 100(1-2):80–84

    Article  CAS  PubMed  Google Scholar 

  • Rohlfs M, Churchill AC (2011) Fungal secondary metabolites as modulators of interactions with insects and other arthropods. Fungal Genet Biol 48(1):23–34

    Article  CAS  PubMed  Google Scholar 

  • Rosa LH, Queiroz SC, Moraes RM, Wang X, Techen N, Pan Z, Wedge DE (2013) Coniochaeta ligniaria: antifungal activity of the cryptic endophytic fungus associated with autotrophic tissue cultures of the medicinal plant Smallanthus sonchifolius (Asteraceae). Symbiosis 60(3):133–142

    Article  Google Scholar 

  • Rukachaisirikul V, Trisuwan K, Sukpondma Y, Phongpaichit S (2008) A new benzoquinone derivative from the leaves of Garcinia parvifolia. Arch Pharm Res 31(1):17–20

    Article  CAS  PubMed  Google Scholar 

  • Saikkonen K, Faeth SH, Helander M, Sullivan TJ (1998) Fungal endophytes: a continuum of interactions with host plants. Annu Rev Ecol Syst 29(1):319–343

    Article  Google Scholar 

  • Sarrocco S (2016) Dung-inhabiting fungi: a potential reservoir of novel secondary metabolites for the control of plant pathogens. Pest Manag Sci 72(4):643–652

    Article  CAS  PubMed  Google Scholar 

  • Sasidharan S, Chen Y, Saravanan D, Sundram KM, Latha LY (2011) Extraction, isolation and characterization of bioactive compounds from plants’ extracts. Afr J Tradit Complement Altern Med 8(1):1–10

    CAS  PubMed  Google Scholar 

  • Savary S, Ficke A, Aubertot JN, Hollier C (2012) Crop losses due to diseases and their implications for global food production losses and food security. Food Sec 4:519–537

    Article  Google Scholar 

  • Saxena S, Meshram V, Kapoor N (2015) Muscodor tigerii sp. nov.: volatile antibiotic producing endophytic fungus from the Northeastern Himalayas. Ann Microbiol 65(1):47–57

    Article  CAS  Google Scholar 

  • Schardl CL, Leuchtmann A, Spiering MJ (2004) Symbioses of grasses with seedborne fungal endophytes. Annu Rev Plant Biol 55:315–340

    Article  CAS  PubMed  Google Scholar 

  • Scherlach K, Hertweck C (2009) Triggering cryptic natural product biosynthesis in microorganisms. Org Biomol Chem 7(9):1753–1760

    Article  CAS  PubMed  Google Scholar 

  • Schippers B, Bakker AW, Bakker PA (1987) Interactions of deleterious and beneficial rhizosphere microorganisms and the effect of cropping practices. Annu Rev Phytopathol 25(1):339–358

    Article  Google Scholar 

  • Schlingmann G, Taniguchi T, He H, Bigelis R, Yang HY, Koehn FE, Berova N (2007) Reassessing the structure of pyranonigrin. J Nat Prod 70(7):1180–1187

    Article  CAS  PubMed  Google Scholar 

  • Schoeman MW, Webber JF, Dickinson DJ (1999) The development of ideas in biological control applied to forest products. Int Biodeterior Biodegrad 43(3):109–123

    Article  Google Scholar 

  • Schulz B, Boyle C, Draeger S, Römmert AK, Krohn K (2002) Endophytic fungi: a source of novel biologically active secondary metabolites. Mycol Res 106(9):996–1004

    Article  CAS  Google Scholar 

  • Schulz B, Sucker J, Aust HJ, Krohn K, Ludewig K, Jones PG, Döring D (1995) Biologically active secondary metabolites of endophytic Pezicula species. Mycol Res 99(8):1007–1015

    Article  CAS  Google Scholar 

  • Scotter JM, Langford VS, Wilson PF, McEwan MJ, Chambers ST (2005) Real-time detection of common microbial volatile organic compounds from medically important fungi by selected ion flow tube-mass spectrometry (SIFT-MS). J Microbiol Methods 63(2):127–134

    Article  CAS  PubMed  Google Scholar 

  • Septama AW, Panichayupakaranant P (2015) Antibacterial assay-guided isolation of active compounds from Artocarpus heterophyllus heartwoods. Pharm Biol 53(11):1608–1613

    Article  CAS  PubMed  Google Scholar 

  • Somei M, Yamada F (2004) Simple indole alkaloids and those with a nonrearranged monoterpenoid unit. Nat Prod Rep 21(2):278–311

    Article  CAS  PubMed  Google Scholar 

  • Son H, Park S, Beuchat LR, Kim H, Ryu JH (2016) Inhibition of Staphylococcus aureus by antimicrobial biofilms formed by competitive exclusion microorganisms on stainless steel. Int J Food Microbiol 238:165–171

    Article  CAS  PubMed  Google Scholar 

  • Spina F, Cecchi G, Landinez-Torres A, Pecoraro L, Russo F, Wu B, Zotti M (2018) Fungi as a toolbox for sustainable bioremediation of pesticides in soil and water. Plant Biosyst 152(3):474–488

    Article  Google Scholar 

  • Stasulli NM, Shank EA (2016) Profiling the metabolic signals involved in chemical communication between microbes using imaging mass spectrometry. Microbiol Rev 40(6):807–813

    CAS  Google Scholar 

  • Stergiopoulos I, Collemare J, Mehrabi R, De Wit PJ (2013) Phytotoxic secondary metabolites and peptides produced by plant pathogenic Dothideomycetes fungi. Microbiol Rev 37(1):67–93

    CAS  Google Scholar 

  • Stevens DA, Kan VL, Judson MA, MorrisonVA DS, Denning DW, Pankey GA (2000) Practice guidelines for diseases caused by Aspergillus. Clin Infect Dis 30(4):696–709

    Article  CAS  PubMed  Google Scholar 

  • Stinson M, Ezra D, Hess WM, Sears J, Strobel G (2003) An endophytic Gliocladium sp. of Eucryphia cordifolia producing selective volatile antimicrobial compounds. Plant Sci 165(4):913–922

    Article  CAS  Google Scholar 

  • Strobel G, Daisy B (2003) Bioprospecting for microbial endophytes and their natural products. Microbiol Mol Biol Rev 67(4):491–502

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Strobel R, Pratsinis SE (2007) Flame aerosol synthesis of smart nanostructured materials. J Mater Chem 17(45):4743–4756

    Article  CAS  Google Scholar 

  • Strobel G, Daisy B, Castillo U (2005) The biological promise of microbial endophytes and their natural products. Plant Pathol J 4(2):161–176

    Article  Google Scholar 

  • Strobel G, Singh SK, Riyaz-Ul-Hassan S, Mitchell AM, Geary B, Sears J (2011) An endophytic/pathogenic Phoma sp. from creosote bush producing biologically active volatile compounds having fuel potential. FEMS Microbiol Lett 320(2):87–94

    Article  CAS  PubMed  Google Scholar 

  • Strobel GA (2014) Methods of discovery and techniques to study endophytic fungi producing fuel-related hydrocarbons. Nat Prod Rep 31(2):259–272

    Article  CAS  PubMed  Google Scholar 

  • Suman A, Yadav AN, Verma P (2016) Endophytic microbes in crops: diversity and beneficial impact for sustainable agriculture. In: Singh D, Abhilash P, Prabha R (eds) Microbial inoculants in sustainable agricultural productivity: research perspectives. Springer-Verlag, New Delhi, pp 117–143. https://doi.org/10.1007/978-81-322-2647-5_7

    Chapter  Google Scholar 

  • Takeda I, Umemura M, Koike H, Asai K, Machida M (2014) Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species. DNA Res 21(4):447–457

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tan RX, Zou WX (2001) Endophytes: a rich source of functional metabolites. Nat Prod Rep 18(4):448–459

    Article  CAS  PubMed  Google Scholar 

  • Tanaka A, Christensen MJ, Takemoto D, Park P, Scott B (2006) Reactive oxygen species play a role in regulating a fungus–perennial ryegrass mutualistic interaction. Plant Cell 18(4):1052–1066

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tenguria RK, Khan FN, Quereshi S (2011) Endophytes: -mines of pharmacological therapeutics. World J Sci Technol 1(5):127–149

    CAS  Google Scholar 

  • Thomson EL, Dennis JJ (2012) A Burkholderia cepacia complex non-ribosomal peptide-synthesized toxin is hemolytic and required for full virulence. Virulence 3(3):286–298

    Article  PubMed  PubMed Central  Google Scholar 

  • Turner NW, Subrahmanyam S, Piletsky SA (2009) Analytical methods for determination of mycotoxins: a review. Anal Chim Acta 632(2):168–180

    Article  CAS  PubMed  Google Scholar 

  • Ulloa-Benítez Á, Medina-Romero YM, Sánchez-Fernández RE, Lappe-Oliveras P, Roque-Flores G, Duarte Lisci G, Macías-Rubalcava ML (2016) Phytotoxic and antimicrobial activity of volatile and semi-volatile organic compounds from the endophyte Hypoxylon anthochroum strain Blaci isolated from Bursera lancifolia (Burseraceae). J Appl Microbiol 121(2):380–400

    Article  CAS  PubMed  Google Scholar 

  • Verginer M, Leitner E, Berg G (2010) Production of volatile metabolites by grape-associated microorganisms. J Agric Food Chem 58(14):8344–8350

    Article  CAS  PubMed  Google Scholar 

  • Vihinen P, Kähäri VM (2002) Matrix metalloproteinases in cancer: prognostic markers and therapeutic targets. Int J Cancer 99(2):157–166

    Article  CAS  PubMed  Google Scholar 

  • Weber D (2009) Endophytic fungi, occurrence and metabolites. In: Physiology and genetics. Springer, Berlin, Heidelberg, pp 153–195

    Chapter  Google Scholar 

  • Wheatley RE (2002) The consequences of volatile organic compound mediated bacterial and fungal interactions. Antonie Van Leeuwenhoek 81(1–4):357–364

    Article  CAS  PubMed  Google Scholar 

  • Xiao ZE, Huang H, Shao C, Xia X, Ma L, Huang X, She Z (2013) Asperterpenols A and B, new sesterterpenoids isolated from a mangrove endophytic fungus Aspergillus sp. 085242. Org Lett 15(10):2522–2525

    Article  CAS  PubMed  Google Scholar 

  • Xing YM, Chen J, Cui JL, Chen XM, Guo SX (2011) Antimicrobial activity and biodiversity of endophytic fungi in Dendrobium devonianum and Dendrobium thyrsiflorum from Vietman. Curr Microbiol 62(4):1218–1224

    Article  CAS  PubMed  Google Scholar 

  • Xiong ZQ, Yang YY, Zhao N, Wang Y (2013) Diversity of endophytic fungi and screening of fungal paclitaxel producer from Anglojap yew, Taxus × media. BMC Microbiol 13(1):71

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu J (2015) Bioactive natural products derived from mangrove-associated microbes. RSC Adv 5(2):841–892

    Article  CAS  Google Scholar 

  • Yadav AN (2018) Biodiversity and biotechnological applications of host-specific endophytic fungi for sustainable agriculture and allied sectors. Acta Sci Microbiol 1:01–05

    Google Scholar 

  • Yadav AN, Kumar R, Kumar S, Kumar V, Sugitha T, Singh B, Chauhan VS, Dhaliwal HS, Saxena AK (2017) Beneficial microbiomes: Biodiversity and potential biotechnological applications for sustainable agriculture and human health. J Appl Biol Biotechnol 5:1–13

    Article  Google Scholar 

  • Yadav AN, Verma P, Kumar V, Sangwan P, Mishra S, Panjiar N, Gupta VK, Saxena AK (2018) Biodiversity of the genus Penicillium in different habitats. In: Gupta VK, Rodriguez-Couto S (eds) New and future developments in microbial biotechnology and bioengineering: Penicillium system properties and applications. Elsevier, Amsterdam, pp 3–18. https://doi.org/10.1016/B978-0-444-63501-3.00001-6

    Chapter  Google Scholar 

  • Yan C, Barlow S, Wang Z, Yan H, Jen AKY, Marder SR, Zhan X (2018) Non-fullerene acceptors for organic solar cells. Nat Rev Mater 3:18003

    Article  CAS  Google Scholar 

  • Yang X, Li L (2011) miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants. Bioinformatics 27(18):2614–2615

    Article  CAS  PubMed  Google Scholar 

  • Yılmaz M, Türk AÖ, Tay T, Kıvanç M (2004) The antimicrobial activity of extracts of the lichen Cladonia foliacea and its usnic acid, atranorin, and fumarprotocetraric acid constituents. Z Naturforsch C 59(3–4):249–254

    Article  PubMed  Google Scholar 

  • Zaiyou J, Li M, Xiqiao H (2017) An endophytic fungus efficiently producing paclitaxel isolated from Taxus wallichiana var. mairei. Medicine (Baltim) 96(27):1–4

    Article  CAS  Google Scholar 

  • Zhang DD, Guo XJ, Wang YJ, Gao TG, Zhu BC (2017) Novel screening strategy reveals a potent Bacillus antagonist capable of mitigating wheat take-all disease caused by Gaeumannomyces graminis var. tritici. Lett Appl Microbiol 65(6):512–519

    Article  CAS  PubMed  Google Scholar 

  • Zhang P, Li XM, Wang JN, Li X, Wang BG (2015) New butenolide derivatives from the marine-derived fungus Paecilomyces variotii with DPPH radical scavenging activity. Phytochem Lett 11:85–88

    Article  CAS  Google Scholar 

  • Zhao J, Shan T, Mou Y, Zhou L (2011) Plant-derived bioactive compounds produced by endophytic fungi. Mini Rev Med Chem 11(2):159–168

    Article  CAS  PubMed  Google Scholar 

  • Zhao J, Lin W, Ma X, Lu Q, Ma X, Bian G, Jiang L (2010) The protein kinase Hal5p is the high-copy suppressor of lithium-sensitive mutations of genes involved in the sporulation and meiosis as well as the ergosterol biosynthesis in Saccharomyces cerevisiae. Genomics 95(5):290–298

    Article  CAS  PubMed  Google Scholar 

  • Zheng YK, Miao CP, Chen HH, Huang FF, Xia YM, Chen YW, Zhao LX (2017) Endophytic fungi harbored in Panax notoginseng: diversity and potential as biological control agents against host plant pathogens of root-rot disease. J Ginseng Res 41(3):353–360

    Article  PubMed  Google Scholar 

  • Zhou J, Xu J (2018) Chemistry and biodiversity of Rhizophora-derived endophytic fungi. In: Mangrove ecosystem ecology and function. IntechOpen, London, UK

    Google Scholar 

  • Zhu M, Zhang X, Feng H, Che Q, Zhu T, Gu Q, Li D (2016) Campyridones A–D, pyridone alkaloids from a mangrove endophytic fungus Campylocarpon sp. HDN13-307. Tetrahedron 72(37):5679–5683

    Article  CAS  Google Scholar 

  • Zou X, Niu S, Ren J, Li E, Liu X, Che Y (2011) Verrucamides A–D, antibacterial cyclopeptides from Myrothecium verrucaria. J Nat Prod 74(5):1111–1116

    Article  CAS  PubMed  Google Scholar 

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Enespa, Chandra, P. (2019). Fungal Community for Novel Secondary Metabolites. In: Yadav, A., Singh, S., Mishra, S., Gupta, A. (eds) Recent Advancement in White Biotechnology Through Fungi. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-030-14846-1_9

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