Skip to main content

Automatic Registration of Deformable Organs in Medical Volume Data by Exhaustive Search

  • Conference paper
  • First Online:
Innovation in Medicine and Healthcare 2015

Part of the book series: Smart Innovation, Systems and Technologies ((SIST,volume 45))

  • 1343 Accesses

Abstract

This paper proposes a novel framework for fully automatic localization of deformable organs in medical volume data, which can obtain not only the position but also simultaneously the orientation and deformation of the organ to be searched, without the need to segment the organ first. The problem is defined as one of minimizing the sum of squared distances between the organ model’s surface points and their closest surface points extracted from the input volume data. The geometric alignment, or so-called registration, of three-dimensional models by least square minimization always has the problem of initial states. We argue that the only way to solve this problem is by the exhaustive search. However, the exhaustive search takes much computational cost. In order to reduce the computational cost, we make efforts in the following three ways: (1) a uniform sampling over 3D rotation group; (2) Pyramidal search for all parameters; (3) Construction of a distance function for efficiently finding closest points. We have finished experiments for searching the six parameters for position and orientation, and the results show that the proposed framework can achieve correct localization of organs in the input data even with very large amounts of noise. We are currently expanding the system to localize organs with large deformation by adding and searching parameters representing scaling and deformation.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Adams, R., Bischof, L.: Seeded region growing. IEEE Trans. on Pattern Anal. Mach. Intell. 16(6), 641–647 (1994)

    Article  Google Scholar 

  2. Chen, Y.W., Tsubokawa, K., Foruzan, A.H.: Liver Segmentation from Low Contrast Open MR Scans Using K-Means Clustering and Graph-Cuts, Lecture Notes in Computer Science LNCS6064, pp.162–169. Springer, Berlin (2010)

    Google Scholar 

  3. Chen, Y.-T., Tseng, D.-C.: Medical Image Segmentation Based on the Bayesian Level Set Method, Medical Imaging and Informatics. Lecture Notes in Computer Science, vol. 4987, pp. 24–34 (2008)

    Google Scholar 

  4. Foruzan, A.H., Chen, Y.W., et al.: Segmentation of liver in low-contrast images using K-means clustering and geodesic active contour algorithms. IEICE Trans. E96-D, 798–807 (2013)

    Google Scholar 

  5. Boykov, Y.: Graph cuts and efficient N-D image segmentation. Int. J. Comput. Vision 70(2), 109–131 (2006)

    Article  Google Scholar 

  6. Rikxoort, van Y.A.E., Ginneken, van B.: Automatic segmentation of the liver in computed tomography scans with voxel classification and atlas matching. In: MICCAI Workshop 3-D Segmentat. Clinic: A Grand Challenge, pp. 101–108 (2007)

    Google Scholar 

  7. Park, H., Bland, P.H., Meyer, C.R.: Construction of an abdominal probabilistic atlas and its application in segmentation. IEEE Trans. Med. Imaging 22, 483–492 (2003)

    Article  Google Scholar 

  8. Zhou, X., Kitagawa, T., Hara, T., Fujita, H., Zhang, X., Yokoyama, R., et al.: Constructing a probabilistic model for automated liver region segmentation using non-contrast X-Ray torso CT images. In: IEEE International Conference on International Conference for Medical Image Computing and Computer-Assisted Intervention, MICCAI 2006, pp. 856–863 (2006)

    Google Scholar 

  9. Linguraru, M.G., Sandberg, J.K., Li, Z., Shah, F., Summers, R.M.: Automated segmentation and quantification of liver and spleen from CT images using normalized probabilistic atlases and enhancement estimation. Int. J. Med. Phys. 37(2), 771–783 (2010)

    Google Scholar 

  10. Li, C.Y., Wang, X.Y., Eberl, S., Fulham, M., Yin, Y., Feng, D.G.: Fully automated liver segmentation for low—and high-contrast ct volumes based on probabilistic atlases In: IEEE International Conference on Image Processing, ICIP 2010, pp. 1522–1736 (2010)

    Google Scholar 

  11. Canny, J.: A computational approach to edge detection. IEEE Trans. Pattern Anal. Mach. Intell. 8, 679–714 (1986)

    Article  Google Scholar 

  12. Ziarati, A.: A multilevel evolutionary algorithm for optimizing numerical functions. IJIEC 2, 419–430 (2010)

    Google Scholar 

  13. Yershova, A., Jain, S., LaValle, S.M., Julie C. Mitchell: Generating uniform incremental grids on SO(3) using Hopf fibration, In Int. J. Robot. Res. IJRR (2009)

    Google Scholar 

  14. Górski, K.M., Hivon, E., Banday, A. J., Wandelt, B. D., Hansen, F. K., Reinecke,M, Bartelmann,M. ∶ HEALPix: a framework for high-resolution discretization and fast analysis of data distributed on the sphere. arXiv: astro-ph/0409513, 622, 759–771 (2005)

  15. 3DSlicer.: http://www.slicer.org/

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Shota Niga .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing Switzerland

About this paper

Cite this paper

Isobe, M., Niga, S., Ito, K., Han, XH., Chen, YW., Xu, G. (2016). Automatic Registration of Deformable Organs in Medical Volume Data by Exhaustive Search. In: Chen, YW., Torro, C., Tanaka, S., Howlett, R., C. Jain, L. (eds) Innovation in Medicine and Healthcare 2015. Smart Innovation, Systems and Technologies, vol 45. Springer, Cham. https://doi.org/10.1007/978-3-319-23024-5_28

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-23024-5_28

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-23023-8

  • Online ISBN: 978-3-319-23024-5

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics