Skip to main content

Case Studies of Ecological Integrative Information Systems: The Luquillo and Sevilleta Information Management Systems

  • Conference paper
Metadata and Semantic Research (MTSR 2010)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 108))

Included in the following conference series:

Abstract

The thirty-year-old United States Long Term Ecological Research Network has developed extensive metadata to document their scientific data. Standard and interoperable metadata is a core component of the data-driven analytical solutions developed by this research network Content management systems offer an affordable solution for rapid deployment of metadata centered information management systems. We developed a customized integrative metadata management system based on the Drupal content management system technology. Building on knowledge and experience with the Sevilleta and Luquillo Long Term Ecological Research sites, we successfully deployed the first two medium-scale customized prototypes. In this paper, we describe the vision behind our Drupal based information management instances, and list the features offered through these Drupal based systems. We also outline the plans to expand the information services offered through these metadata centered management systems. We will conclude with the growing list of participants deploying similar instances.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Michener, W.K.: Meta-information concepts for ecological data management. Ecological Informatics 1(1), 3–7 (2005)

    Article  Google Scholar 

  2. Sepic, R., Kase, K.: The national biological information infrastructure as an E-government tool Government. Information Quarterly 19(4), 407–424 (2002)

    Google Scholar 

  3. The National Biological Information Infrastructure site, http://nbii.gov

  4. San Gil, I., Hutchison, V., Frame, M., Palanisamy, G.: Metadata Activities in Biology. J. of Library Metadata (2010) (accepted)

    Google Scholar 

  5. Aguilar, R., Pan, J., Gries, C., San Gil, I., Palanisamy, G.: A flexible online metadata editing and management system. Ecological Informatics 5(1), 26–31 (2009)

    Article  Google Scholar 

  6. The Arizona Hydrological Information System, http://chubasco.hwr.arizona.edu/ahis-drupal/

  7. The Oak Ridge National Laboratory Mercury Consortium, http://mercury.ornl.gov/

  8. The Drupal Content Management System, http://drupal.org

  9. The Long Term Ecological Research Network, http://lternet.edu

  10. Hobbie, J.E.: Scientific Accomplishments of the Long Term Ecological Research Program: An Introduction. BioScience 53(1), 17–20 (2003)

    Article  Google Scholar 

  11. San Gil, I., Baker, K., Campbell, J., Denny, E.G., Vanderbilt, K., Riordan, B., Koskela, R., Downing, J., Grabner, S., Melendez, E., Walsh, J.M., Kortz, M., Conner, J., Yarmey, L., Kaplan, N., Boose, E.R., Powell, L., Gries, C., Schroeder, R., Ackerman, T., Ramsey, K., Benson, B., Chipman, J., Laundre, J., Garritt, H., Henshaw, D., Collins, B., Gardner, C., Bohm, S., O’Brien, M., Gao, J., Sheldon, W., Lyon, S., Bahauddin, D., Servilla, M., Costa, D., Brunt, J.: The Long Term Ecological Network metadata standardisation implementation process: A progress report. International Journal of Metadata, Semantics and Ontologies 4(3), 141–153 (2009)

    Article  Google Scholar 

  12. Harmon, M.: Motion to adopt EML at the Coordinating Committee (2003), http://intranet.lternet.edu/archives/documents/reports/Minutes/lter_cc/Spring2003CCmtng/Spring_03_CC.htm

  13. Orbeon, a framework for XForms, http://orbeon.org

  14. Tomcat, An apache servlet container, http://tomcat.apache.org

  15. Rugge, D.J.: Creating FGDC and NBII metadata using metavist 2005. Technical Report (2005), http://ncrs.fs.fed.us/pubs/gtr/gtr_nc255.pdf

  16. Morpho, a standalone editor that outputs Ecological Metadata Language compliant XML, http://knb.ecoinformatics.org/software/morpho/

  17. The Organization for Biological Field Stations portal , http://obfs.org/

  18. ISO 19115. A international geographic information metadata standard, http://www.iso.org/iso/iso_catalogue/catalogue_tc/catalogue_detail.htm?csnumber=26020&commid=54904

  19. ISO 19137. Another ISO standard to cover geographic metadata, this is the XML implementation, http://www.iso.org/iso/catalogue_detail.htm?csnumber=32555&commid=54904

  20. The US National Phenology Network, http://usanpn.org

  21. The ecology group at Sierra Nevada, creators of Linaria, http://iecolab.es/

  22. The University of Michigan Biological Field Station using Drupal (2010), Resource at, http://umbs.lsa.umich.edu/research/

  23. The wind energy data and information gateway (WENDY), http://windenergy.ornl.gov/

  24. Encyclopedia of Life, http://eol.org

  25. LifeDesks Drupal Modules, by the encyclopedia of life http://www.lifedesks.org/modules/

  26. Wiersma, G.S.: Building Online Content and Community with Drupal. Collaborative Librarianship 1(4), 169 (2009)

    Google Scholar 

  27. Apache web server, http://apache.org

  28. Microsoft’s Internet Information Server, http://iis.net

  29. The Pre HTML Processor language, http://php.net

  30. The JavaScript, https://developer.mozilla.org/en/firefox_3.6_for_developers#JavaScript

  31. Mysql now, http://mysql.com

  32. PostGreSQL, http://postgresql.org

  33. Buytaert, D.: State of Drupal. Keynote presentation at DrupalCon 2010, San Francisco, CA (2010), http://www.archive.org/details/Css3TheFutureIsNow

  34. The Drupal themes, http://drupal.org/project/Themes

  35. The extensible markup language, http://w3.org/XML

  36. The Perl language, http://perl.org

  37. The XML stylesheet transformation language, http://w3.org/Style/XSL/

  38. The guidelines for EML use are, http://knb.ecoinformatics.org/software/eml/eml-2.0.1/index.html

  39. The Biological Data Profile, http://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/biometadata/biodatap.pdf

  40. Velleman, P.F., Wilkinson, L.: Nominal, ordinal, interval, and ratio typologies are misleading. American Statistician, 65–72 (1993)

    Google Scholar 

  41. The Luquillo Experimental Forest LTER, http://luq.lternet.edu

  42. The Sevilleta LTER portal, http://sev.lternet.edu

  43. Melendez, E.: Developing a Drupal website-IMS for Luquillo LTER while learning Drupal. Databits. Spring Issue (2010), http://databits.lternet.edu/spring-2010/developing-drupal-website-ims-luquillo-lter-while-learning-drupal

  44. PostNuke Content management system

    Google Scholar 

  45. San Gil, I., Baker, K.: The Ecological Metadata Language Milestones, Community Work Force, and Change. Databits, 4–7 (Fall 2007)

    Google Scholar 

  46. The Plum Island Ecosystem, http://ecosystems.mbl.edu/pie/

  47. The Arctic LTER, http://ecosystems.mbl.edu/arc/

  48. The Marine Biology Laboratory at Woods Hole, Massachusetts, http://mbl.edu

  49. The University of Michigan Biological Station, http://umbs.lsa.umich.edu/research/

  50. The North Temperate Lakes Drupal developments, http://lter.dnsalias.net/site/

  51. The DIMS, http://intranet.lternet.edu/im/project/dims

  52. One of the instances of a cloud based editor, http://nbii.lternet.edu

  53. Lytras, M.D., Sicilia, M.A.: Where is the value in metadata? International Journal of Metadata, Semantics and Ontologies 2(4), 235–241 (2007)

    Article  Google Scholar 

  54. NBII Thesaurus tool and web client accessible, http://thesaurus.nbii.gov

  55. The Taxonomic web services, http://www.itis.gov/web_service.html

  56. The University of Tennessee College of Communication and Information user experience laboratory, http://www.cci.utk.edu/

  57. Servilla, M.S., Brunt, J.W., San Gil, I., Costa, D.: Pasta: A Network-level Architecture Design for Generating Synthetic Data Products in the LTER Network. Databits – Fall (2006)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

San Gil, I., White, M., Melendez, E., Vanderbilt, K. (2010). Case Studies of Ecological Integrative Information Systems: The Luquillo and Sevilleta Information Management Systems. In: Sánchez-Alonso, S., Athanasiadis, I.N. (eds) Metadata and Semantic Research. MTSR 2010. Communications in Computer and Information Science, vol 108. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16552-8_3

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-16552-8_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-16551-1

  • Online ISBN: 978-3-642-16552-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics