Abstract
The Malaysian Parasite Database is set up to collect, digitize, collate, integrate and analyse available literatures on Malaysian parasites to be shared and disseminated through an integrated database system for the generation of knowledge. We adopted the data warehouse approach which is convenient and meets the purpose for the Malaysian Parasite Database. The data includes information on parasite specimens collected besides their taxonomy, biology, ecology, hosts and DNA which will be regularly updated. These data ,which will be regularly updated are initially obtained from literatures and researchers collections which are then digitized and added into the database. We plan to integrate this database with other parasite host databases in order to provide a detailed and comprehensive information on indigenous parasites. This database is envisaged to be dynamic with regular incorporation of new analytical methods and novel use. In this paper, we present the infrastructure of the Malaysian Parasite Database and using a data warehouse approach which uses wrappers for a structured data extraction from related public databases and a structured vocabulary for data integration. The current and future implementations of the proposed infrastructure will be hosted on a cloud environment.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Koonin, E.V., Galperin, M.Y.: Prokaryotic genomes: the emerging paradigm of genome-based microbiology. Current Opinions in Genetic Development 7, 757–763 (1997)
Sarinder, K.K.S., Majid, M.A., Lim, L.H.S., Ibrahim, H., Merican, A.F.: Integrated Biological Database Initiative (IBDI). In: Proceedings of International Conference on Biogeography and Biodiversity Wallace in Sarawak – 150 Years Later, Kuching, Malaysia (2005)
Merican, A.F., Othman, R., Ismail, N., Cheah, K.P., Mok, L., Yin, Y.K.C., Kaur, S.: Development of Malaysian Indigenous Microorganisms Online Database System. Asia Pacific Journal of Molecular Biology and Biotechnology 10(1), 69–72
Guan, S.L., Kirton, L.G.: Biological Collections at the Forest Research Institute Malaysia. In: 22nd Pacific Science Congress, Kuala Lumpur (2011)
Napis, S., Salleh, K.M., Itam, K., Latiff, A.: Biodiversity Databases for Malaysian Flora and Fauna: An Update. In: Proceedings of Internet Workshop, National Institute of Informatics, Tokyo, Japan and High Quality Internet Study Group of Information Processing Society of Japan, IPSJ (2001)
Kamruzzaman, A.Z.M., Selamat, H., Wahid, M.T.: Conceptual Design of Biodiversity Data Model (BiDaM) using Object Relational and Event Based Approach. In: Proceedings of the Postgraduate Annual Research Seminar 2005, pp. 77–81 (2005)
Sprague, J., Bayraktaroglu, L., Clements, D., Conlin, T., Fashena, D., Frazer, K., Haendel, M., Howe, D.G., Mani, P., Ramachandran, S., et al.: The Zebrafish Information Network: the zebrafish model organism database about project success: an exploratory study. Nucleic Acids Research 34, 581–585 (2006)
Zouberakis, M., Chandras, C., Swertz, M., Smedley, D., Gruenberger, M., Bard, J., Schughart, K., Rosenthal, N., Hancock, J.M., Schofield, P.N., Kollias, G., Aidinis, V.: Database, vol. 2010 (2010)
Murthy, U., Fox, E.A., Chen, Y., Hallerman, E., da Silva Torres, R., Ramos, E.J., Falcão, T.R.C.: Superimposed Image Description and Retrieval for Fish Species Identification. In: Agosti, M., Borbinha, J., Kapidakis, S., Papatheodorou, C., Tsakonas, G. (eds.) ECDL 2009. LNCS, vol. 5714, pp. 285–296. Springer, Heidelberg (2009)
Kozievitch, N.P., da Silva Torres, R., Andrade, F., Murthy, U., Fox, E., Hallerman, E.: A teaching tool for parasitology: Enhancing learning with annotation and image retrieval. In: Lalmas, M., Jose, J., Rauber, A., Sebastiani, F., Frommholz, I. (eds.) ECDL 2010. LNCS, vol. 6273, pp. 466–469. Springer, Heidelberg (2010)
Lim, L.H.S.: Diversity of monogeneans in Southeast Asia. International Journal for Parasitology 28(10), 1495–1515 (1998)
Lim, L.H.S.: Parasites as indicators of present and past ecology of the environment. In: Tuen, A.A., Das, I. (eds.) Proceedings of the Wallace in Sarawak - 150 Years Later. An International Conference on Biogeography and Biodiversity, pp. 223–224 (2005)
Tisdall, J.D.: Mastering Perl for bioinformatics. O’Reilly, Sebastopol (2003)
Williams, N.: Bioinformatics: How to Get Databases Talking the Same Language. Science 275, 301–302 (1997)
Etzold, T., Argos, P.: SRS: An Indexing and Retrieval Tool for Flat File Data Libraries. Computer Application of Biosciences 9, 49–57 (1993)
Rebhan, M., Chalifa-Caspi, V., Prilusky, J., Lancet, D.: GeneCards: encyclopedia for Genes, Proteins, and Diseases. Weizmann Institute of Science, Bioinformatics Unit and Genome Center, Rehovot, Israel (1997)
Fujibuchi, W., Goto, S., Migimatsu, H., Uchiyama, I., Ogiwara, A., Akiyama, Y., Kanehisa, M.: DBGET/LinkDB: an Integrated Database Retrieval System. In: Pacific Symposium of Biocomputing. PSB Electronic Proceedings, Hawaii (1998)
Haas, L., Schwarz, P., Kodali, P., Kotlar, E., Rice, J., Swope, W.: DiscoveryLink: A system for integrated access to life sciences data sources. IBM Systems Journal 40, 489–511 (2001)
Davidson, S., Crabtree, J., Brunk, B., Schug, J., Tannen, V., Overton, C., Stoeckert, C.: K2/Kleisli and GUS: Experiments in Integrated Access to Genomic Data Sources. IBM Systems Journal 40, 512–531 (2001)
Buneman, P., Davidson, S., Hart, K., Overton, C., Wong, L.: A Data Transformation System for Biological Data Sources. In: 21st International Conference on Very Large Data Bases (VLDB 1995). Morgan Kaufmann, Zurich (1995)
Lu, W., Jackson, J., Ekanayake, J., Barga, R.S., Araujo, N.: Performing Large Science Experiments on Azure: Pitfalls and Solutions. In: Proc. CloudCom, pp. 209–217 (2010)
Karp, P.D.: A strategy for database interoperation. Journal of Computational Biology 2, 573–583 (1996)
Ritter, O.: The integrated genomic database. In: Suhai, S. (ed.) Computational Methods in Genome Research. Plenum, New York (1994)
Ben-natan, R.: CORBA. McGraw Hill, New York (1995)
Achard, F., Barillot, E.: Ubiquitous distributed objects with CORBA. In: Pacific Symposium on Biocomputing, pp. 39–50 (1997)
Stein, L.D., Cartinhour, S., Thierry-mieg, D., Thierry-mieg, J.: JADE: An approach for interconnecting bioinformatics databases. Gene 209, 39–43 (1998)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Dhillon, S.K., Shuhaimi, NI., Hong, S.L.L., Sidhu, A.S. (2013). Malaysian Parasite Database Infrastructure. In: Sidhu, A., Dhillon, S. (eds) Advances in Biomedical Infrastructure 2013. Studies in Computational Intelligence, vol 477. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-37137-0_10
Download citation
DOI: https://doi.org/10.1007/978-3-642-37137-0_10
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-37136-3
Online ISBN: 978-3-642-37137-0
eBook Packages: EngineeringEngineering (R0)