Skip to main content

Procedures for constructing ds-cDNA clone banks

  • Chapter
Plant Molecular Biology Manual

Abstract

The construction of the first plant ds-cDNA clones used the abundant mRNAs which encode bean seed storage proteins of Phaseolus vulgaris and Glycine max as starting materials [11, 32, 33]. These mRNAs comprise about 30–40% of the total poly(A)+ RNA in developing cotyledons, and with just a few purification steps can be enriched to a purity of greater than 95% [33]. Construction and isolation of cDNA clones representing these bean storage protein mRNAs was relatively straightforward and did not require a high degree of efficiency in either construction, transformation, or screening procedures. In most cases, identification of the correct clone involved little more than checking the inserts from a few colonies by restriction enzyme digestion, followed by blot hybridization with 32P-labeled single-stranded (ss) cDNA [33].

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Alexander DC, McKnight TD, Williams BG (1984) A simplified and efficient vector-primer cDNA cloning system. Gene 31:79–89.

    Article  PubMed  CAS  Google Scholar 

  2. Appleyard RK (1954) Segregation of new lysogenic types during growth of a double lysogenic strain derived from Escherichia coli K12. Genetics 39:440–452.

    PubMed  CAS  Google Scholar 

  3. Berent SL, Mahmoudi M, Torczynski RM, Bragg PW, Bollon AP (1985) Comparison of oligonucleotide and long DNA fragments as probes in DNA and RNA dot, Southern, Northern, colony and plaque hybridizations. BioTechniques (1985): 208–220.

    Google Scholar 

  4. Birnboim H, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant Plasmid DNA. Nucleic Acids Res 7:1513–1523.

    Article  PubMed  CAS  Google Scholar 

  5. Blattner FR, Blechl AE, Denniston-Thompson K, Faber HE, Richards JE, Slightom JL, Tucker PW, Smithies O (1978) Cloning human fetal γ globin and mouse α-type globin DNA: Preparation and screening of shotgun collections. Science 202:1279–1284.

    Article  PubMed  CAS  Google Scholar 

  6. Blattner FR, Williams BG, Blechl AE, Denniston-Thompson K, Faber HE, Furlong L-A, Grunwald DJ, Kiefer DO, Moore DD, Schumm JW, Sheldon EL, Smithies O (1977) Charon phages: safer derivatives of bacteriophage lambda for DNA cloning. Science 196:161–169.

    Article  PubMed  CAS  Google Scholar 

  7. Bolivar F, Rodriguez RL, Greene PJ, Betlach MC, Heynecker HL, Boyer HW, Crosa JH, Falkow S (1977) Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene 2:95–113.

    Article  PubMed  CAS  Google Scholar 

  8. Boyer HW, Roulland-Dussoix D (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41:459–472.

    Article  PubMed  CAS  Google Scholar 

  9. D’Alessio JM, Noon MC, Ley III HL, Gerard GF (1987) One-tube double-stranded cDNA synthesis using cloned M-MLV reverse transcriptase. BRL Focus 9:1–4.

    Google Scholar 

  10. Efstratiadis A, Kafatos FC, Maxam AM, Maniatis T (1976) Enzymatic in vitro synthesis of globin genes. Cell 7:279–288.

    Article  PubMed  CAS  Google Scholar 

  11. Goldberg RB, Hoschek G, Ditta GS, Breidenbach RW (1981) Developmental regulation of cloned superabundant embryo mRNAs in soybean. Develop Biol 83:218–231.

    Article  PubMed  CAS  Google Scholar 

  12. Grunstein M, Hogness DS (1975) Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci USA 72:3961–3965.

    Article  PubMed  CAS  Google Scholar 

  13. Gubler U, Hoffman BJ (1983) A simple and very efficient method for generating cDNA libraries. Gene 25:263–269.

    Article  PubMed  CAS  Google Scholar 

  14. Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166:557–580.

    Article  PubMed  CAS  Google Scholar 

  15. Hanahan D, Meselson M (1986) Plasmid screening at high colony density. Gene 10:63–67.

    Article  Google Scholar 

  16. Helfman DM, Feramisco JR, Fiddes JC, Thomas GP, Hughes SH (1984) Immunological screening of cDNA expression libraries. BRL Focus 6:1–5.

    Google Scholar 

  17. Hohn B (1979) In vitro packaging of λ and cosmid DNA. Methods Enzymol 68:299–309.

    Article  PubMed  CAS  Google Scholar 

  18. Huynh TV, Young RA, Davis R (1985) Constructing and screening cDNA libraries in λg10 and λgt11. In: Glover DM (ed) DNA Cloning, Vol. I, A Practical Approach, pp. 49–78. Washington, DC: IPL Press.

    Google Scholar 

  19. Kamalay JC, Goldberg RB (1980) Regulation of structural gene expression in tobacco. Cell 19:935–946.

    Article  PubMed  CAS  Google Scholar 

  20. Kroeker WD, Kowalski D (1978) Gene-sized pieces produced by digestion of linear duplex DNA with mung bean nuclease. Biochemistry (1978): 3236–3243.

    Google Scholar 

  21. Land H, Grez M, Hauser H, Lindenmaier W, Schultz G (1981) 5’-Terminal sequences of eucaryotic mRNA can be cloned with high efficiency. Nucleic Acids Res 9:2251–2266.

    Article  PubMed  Google Scholar 

  22. Maxam AM, Gilbert W (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol 65:499–560.

    Article  PubMed  CAS  Google Scholar 

  23. Maniatis R, Fritsch EF, Sambrook J (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.

    Google Scholar 

  24. Messing J (1983) New M13 vectors for cloning. Methods Enzymol 101:20–79.

    Article  PubMed  CAS  Google Scholar 

  25. Murray MG, Hoffman LM, Jarvis NP (1983) Improved yield of full length phaseolin cDNA clones by controlling premature anticomplementary DNA synthesis. Plant Molec Biol 2:75–83.

    Article  CAS  Google Scholar 

  26. Okayama H, Berg P (1982) High-efficiency cloning of full-length cDNA. Mol Cell Biol 2:161–170.

    PubMed  CAS  Google Scholar 

  27. Peacock SL, Mclver CM, Monahan JJ (1981) Transformation of E. coli using homopolymer-linked plasmid chimeras. Biochim Biophys Acta 655:243–250.

    PubMed  CAS  Google Scholar 

  28. Polites HG, Marotti KR (1986) A step-wise protocol for cDNA synthesis. BioTechniques 4:514–520.

    CAS  Google Scholar 

  29. Rosenberg SM, Stahl MM, Kobayashi I, Stahl FW (1985) Improved in vitro packaging of coliphage lambda DNA: a one-strain system free from endogenous phage. Gene 38:165–175.

    Article  PubMed  CAS  Google Scholar 

  30. Rougeon F, Mach B (1976) Stepwise biosynthesis in vitro of globin genes from globin mRNA by DNA polymerase of avian myeloblastosis virus. Proc Natl Acad Sci USA 73:3418–3422.

    Article  PubMed  CAS  Google Scholar 

  31. Roychoudhury R, Jay E, Wu R (1976) Terminal labeling and addition of homopolymer tracts to duplex DNA fragments by terminal deoxynucleotidyl transferase. Nucleic Acids Res 3:101–116.

    PubMed  CAS  Google Scholar 

  32. Schuler MA, Ladin BF, Pollaco JC, Freyer G, Beachy RN (1982) Structural sequences are conserved in the genes coding for the α, α′ and β-subunits of the soybean 7S seed storage protein. Nucleic Acids Res 10:8245–8261.

    Article  PubMed  CAS  Google Scholar 

  33. Sun SM, Slightom JL, Hall TC (1981) Intervening sequences in a plant gene-comparison of the partial sequence of cDNA and genomic DNA of french bean phaseolin. Nature 289:37–41.

    Article  CAS  Google Scholar 

  34. Villa-Komaroff L, Efstratiadis A, Broome S, Lomedico P, Tizard R, Naber SP, Chick WL, Gilbert W (1978) A bacterial clone synthesizing proinsulin. Proc Natl Acad Sci USA 75:3727–3731.

    Article  PubMed  CAS  Google Scholar 

  35. Wensink PC, Finnegan DJ, Donelson JE, Hogness DS (1974) A system for mapping DNA sequences in the chromosomes of Drosophila melanogaster. Cell 3:315–325.

    Article  PubMed  CAS  Google Scholar 

  36. Woods D (1984) Oligonucleotide screening of cDNA libraries. BRL Focus 6:1–3.

    Google Scholar 

  37. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119.

    Article  PubMed  CAS  Google Scholar 

  38. Young RA, Davis RW (1983) Efficient isolation of genes by using antibody probes. Proc Natl Acad Sci USA 80:1194–1198.

    Article  PubMed  CAS  Google Scholar 

  39. Young RA, Davis RW (1983) Yeast RNA polymerase II genes: isolation with antibody probes. Science 222:778–782.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1989 Kluwer Academic Publishers, Dordrecht

About this chapter

Cite this chapter

Slightom, J.L., Quemada, H.D. (1989). Procedures for constructing ds-cDNA clone banks. In: Gelvin, S.B., Schilperoort, R.A., Verma, D.P.S. (eds) Plant Molecular Biology Manual. Springer, Dordrecht. https://doi.org/10.1007/978-94-009-0951-9_7

Download citation

  • DOI: https://doi.org/10.1007/978-94-009-0951-9_7

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-6918-2

  • Online ISBN: 978-94-009-0951-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics