Skip to main content

RNA Structure Modules with Trinucleotide Repeat Motifs

  • Chapter
RNA Biochemistry and Biotechnology

Part of the book series: NATO Science Series ((ASHT,volume 70))

Abstract

A new mutational basis for human disease was discovered in the beginning of this decade. The genes responsible for fragile X syndrome, spinobulbar muscular atrophy and later the genes causing myotonic dystrophy and Huntington disease were shown to harbor unstable, expanding trinucleotide repeats. The dynamic nature of these mutations explained intriguing features of clinical symptoms observed in families inheriting these diseases. The increasing disease penetrance and expresivity in subsequent family generations could be correlated with the increasing number of trinucleotide repeats. Now, thirteen human hereditary neurological diseases are known to have their underlying cause in the trinucleotide repeat expansions [1] and their list is likely to grow.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Wells, R.D. and Warren, S.T. (1998) Genetic Instabilities and Hereditary Neurological Diseases, Academic Press, San Diego.

    Book  Google Scholar 

  2. Wang, J., Pegoraro, E., Menegazzo, E., Gennarelli, M., Hoop, R.C., Angelini, C., and Hoffman, E.P. (1995) Myotonic dystrophy: evidence for a possible dominant-negative RNA mutation, Hum. Mol. Genet. 4, 599–606.

    Article  PubMed  CAS  Google Scholar 

  3. Korade-Mimics, Z., Babitzke, P., and Hoffman, E.P. (1998) Myotonic dystrophy: molecular windows on a complex etiology, Nucleic Acids Res. 26, 1363–1368.

    Article  Google Scholar 

  4. Philips, A.V., Timchenko, L.T., and Cooper T.A. (1998) Disruption of splicing regulated by a CUG­binding protein in myotonic dystrophy. Science 280, 737–741.

    Article  PubMed  CAS  Google Scholar 

  5. Ohshima, K., Montermini, L., Wells, R.D. and Pandolfo, M. (1998) Inhibitory effects of expanded GAA.TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo. J Biol. Chem. 273, 14588–14595.

    Article  PubMed  CAS  Google Scholar 

  6. Feng, Y., Zhang, F., Lokey, L.K., Chastain, J.L., Lakkis, L., Eberhart, D., and Warren S.T. (1995) Translational suppression by trinucleotide repeat expansion at FMR1. Science 268, 731–734.

    Article  PubMed  CAS  Google Scholar 

  7. McLaughlin, B.A., Spencer, C., and Eberwine, J. (1996) CAG trinucleotide RNA repeats interact with RNA-binding proteins. Am. J. Hum. Genet. 59, 561–569.

    PubMed  CAS  Google Scholar 

  8. Lunkes, A. and Mandel, J.L. (1997) Polyglutamines, nuclear inclusions and neurodegeneration. Nat Med. 3, 1201–2.

    Article  PubMed  CAS  Google Scholar 

  9. Zuker, M. (1989) On finding all suboptimal foldings of an RNA molecule. Science 244, 48–52.

    Article  PubMed  CAS  Google Scholar 

  10. Timchenko, L.T., Timchenko, N.A., Caskey, C.T., and Roberts, R. (1996) Novel proteins with binding specificity for DNA CTG repeats and RNA CUG repeats: implications for myotonic dystrophy. Hum. Mol. Genet. 5, 115–121.

    Article  PubMed  CAS  Google Scholar 

  11. Timchenko, L.T., Miller, J.W., Timchenko, N.A., DeVore, D.R., Datar, K. V., Lin, L., Roberts, R., Caskey, C.T., and Swanson, M.S. (1996) Identification of a (CUG)n triplet repeat RNA-binding protein and its expression in myotonic dystrophy. Nucleic Acids Res. 15, 4407–4414.

    Article  Google Scholar 

  12. Bhagwati, S., Ghatpande, A., and Leung, B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem. Biophys. Res. Commun. 228, 55–62.

    Article  PubMed  CAS  Google Scholar 

  13. Pleiss, J.A., Derrick, M.L., and Uhlenbeck, O.C. (1998) T7 RNA polymerase produces 5’ end heterogeneity during in vitro transcription from certain templates. RNA 4, 1313–1317.

    Article  PubMed  CAS  Google Scholar 

  14. Krzyiosiak, W.J., Denman, R., Nurse, K., Hellmann, W., Boublik, M., Gehrke, C.W., Agris, P.F., and Ofengand, J. (1987) In vitro synthesis of 16S ribosomal RNA containing single base changes and assembly into a functional 30S ribosome. Biochemistry 26, 2353–2364.

    Article  Google Scholar 

  15. Michałowski, D., Wrzesinski, J., and Krzyiosiak, W.J. (1996) Cleavages induced by different metal ions in yeast tRNA(Phe) U59C60 mutants. Biochemistry 35, 10727–10734.

    Article  PubMed  Google Scholar 

  16. Napierala, M., Michałowski, D., and Krzyżosiak W.J. (1998) in preparation.

    Google Scholar 

  17. Knapp, G. (1989) Enzymatic approaches to probing of RNA secondary and tertiary structure. Methods Enzymol. 180, 192–212.

    Article  PubMed  CAS  Google Scholar 

  18. Jaeger, J.A., SantaLucia, J. Jr, Tinoco, I. Jr. (1993) Determination of RNA structure and thermodynamics. Annu. Rev. Biochem. 62, 255–287.

    Article  PubMed  CAS  Google Scholar 

  19. Ehresmann, C., Baudin, F., Mougel, M., Romby, P., Ebel, J.P., and Ehresmann, B. (1987) Probing the structure of RNAs in solution. Nucleic. Acids Res. 15, 9109–9128.

    Article  PubMed  CAS  Google Scholar 

  20. Krol, A. and Carbon, P. (1989) A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol. 180, 212–227

    Article  PubMed  CAS  Google Scholar 

  21. Brown, R.S., Hingerty, B.E., Dewan, J.C., and Klug, A. (1983) Pb(II)-catalysed cleavage of the sugar-phosphate backbone of yeast tRNAPhe--implications for lead toxicity and self-splicing RNA. Nature 303, 543–546.

    Article  PubMed  CAS  Google Scholar 

  22. Krzyżosiak, W.J., Marciniec, T., Wiewiorowski, M., Romby, P., Ebel, J.P., and Giege, R. (1988) Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe. Biochemistry 27, 5771–5777.

    Article  PubMed  Google Scholar 

  23. Ciesiołka, J., Michałowski, D., Wrzesinski, J., Krajewski, J., and Krzyżosiak, W.J. (1998). Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs. J. Mol. Biol. 275, 211–220.

    Article  PubMed  Google Scholar 

  24. Górnicki, P., Baudin, F., Romby, P., Wiewiórowski, M., Krzyżosiak, W., Ebel, J.P., Ehresmann, C., and Ehresmann, B. (1989) Use of lead(11) to probe the structure of large RNA’s. Conformation of the 3’ terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites. J. Biomol. Struct. Dyn. 6, 971–984.

    Article  PubMed  Google Scholar 

  25. Brown, R.S., Dewan, J.C., and Klug, A. (1985) Crystallographic and biochemical investigation of the lead(lI)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry 24, 4785–4801.

    Article  PubMed  CAS  Google Scholar 

  26. Napierala, M. and Krzyżosiak, W.J. (1997) CUG repeats present in myotonin kinase RNA form metastable “slippery” hairpins. J. Biol. Chem. 272, 31079–31085.

    Article  PubMed  CAS  Google Scholar 

  27. Napierala, M., and Krzyżosiak W.J. (1997) unpublished.

    Google Scholar 

  28. Mitas, M., Yu, A., Dill, J., Kamp, T.J., Chambers, E.J., and Haworth, I.S. (1995) Hairpin properties of single-stranded DNA containing a GC-rich triplet repeat: (CTG)15. Nucleic Acids Res. 23, 1050–1059.

    Article  PubMed  CAS  Google Scholar 

  29. Mariappan, S.V., Chen, X., Catasti, P., Bradbury, E.M., and Gupta, G. (1998) Structural Studies on the Unstable Triplet Repeats in R.D. Wells and S.T. Warren (eds.), Genetic Instabilities and Hereditary Neurological Diseases, Academic Press, San Diego, pp. 647–676.

    Google Scholar 

  30. Koch, K.S., Leffert, H.L. (1998) Giant hairpins formed by CUG repeats in myotonic dystrophy messenger RNAs might sterically block RNA export through nuclear pores. J. Theor. Biol. 192, 505–514.

    Article  PubMed  CAS  Google Scholar 

  31. Davis, B.M., McCurrach, M.E., Taneja, K.L., Singer, R.H., annd Housman, D.E. (1997) Expansion of a CUG trinucleotide repeat in the 3’ untranslated region of myotonic dystrophy protein kinase transcripts results in nuclear retention of transcripts. Proc. Natl. Acad. Sci. USA 94, 7388–7393.

    Article  PubMed  CAS  Google Scholar 

  32. Hamshere, M.G., Newman, E.E., Alwazzan, M., Athwal, B.S., and Brook JD (1997) Transcriptional abnormality in myotonic dystrophy affects DMPK but not neighboring genes. Proc. Natl. Acad. Sci. USA 94, 7394–7399.

    Article  PubMed  CAS  Google Scholar 

  33. Klesert, T.R., Otten, A.D., Bird, T.D., and Tapscott, S.J. (1997) Trinucleotide repeat expansion at the myotonic dystrophy locus reduces expression of DMAHP. Nat. Genet. 16, 402–406.

    Article  PubMed  CAS  Google Scholar 

  34. Thornton, C.A., Wymer, J.P., Simmons, Z., McClain, C., and Moxley, R.T. (1997) Expansion of the myotonic dystrophy CTG repeat reduces expression of the flanking DMAHP gene. Nat. Genet. 16, 407­-409.

    Article  PubMed  Google Scholar 

  35. Napierala, M., Drozdz, M., Michałowski, D., and Krzyżosiak W.J. (1998) in preparation.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1999 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Krzyzosiak, W.J., Napierala, M., Drozdz, M. (1999). RNA Structure Modules with Trinucleotide Repeat Motifs. In: Barciszewski, J., Clark, B.F.C. (eds) RNA Biochemistry and Biotechnology. NATO Science Series, vol 70. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-4485-8_22

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-4485-8_22

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-0-7923-5862-6

  • Online ISBN: 978-94-011-4485-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics