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Carbon Sequestration and the Significance of Soil Fungi in the Process

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Fungi and their Role in Sustainable Development: Current Perspectives

Abstract

With the advent of industrial revolution, the release of carbon dioxide in the air has increased its concentration in the atmosphere to alarming levels. The value that was approximately 277 ppm in the beginning has crossed the 400 ppm mark in the recent times. The increase in the level of CO2 can be controlled by two pronged approach: first the causes for the rise in the CO2 be identified and managed, and second, the factors which can act as sink to reduce the increase in the CO2 concentration in atmosphere be identified and used in proper manner. Terrestrial component has proven to be acting as a sink to carbon and has in the past kept the concentration of CO2 in check by sequestering it in various forms in the soil. Soil fungi are found to be the main regulatory component in the process, by accumulating carbon in their biomass and by producing recalcitrant decomposition products that have very long residence time in the soil, ranging from years to centuries.

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References

  • Adu JK, Oades JM (1978) Utilization of organic materials in soil aggregates by bacteria and fungi. Soil Biol Biochem 10:117–122

    Article  CAS  Google Scholar 

  • Acosta-Martınez V, Zobeck TM, Gill TE, Kennedy AC (2003) Enzyme activities and microbial community structure in semiarid agricultural soils. Biol Fertil Soils 38:216–227

    Article  CAS  Google Scholar 

  • Allison SD (2012) A trait-based approach for modelling microbial litter decomposition. Ecol Lett 15:1058–1070

    Article  CAS  PubMed  Google Scholar 

  • Allison VJ, Miller RM, Jastrow JD, Matamala R, Zak DR (2005) Changes in soil microbial community structure in a tallgrass prairie chronosequence. Soil Sci Soc Am J 69:1412–1421

    Article  CAS  Google Scholar 

  • Ander P, Eriksson K-E (1977) Selective degradation of wood components by white-rot fungi. Physiol Plant 41:239–248

    Article  CAS  Google Scholar 

  • Bailey VL, Smith JL, Bolton H Jr (2002) Fungal-to-bacterial ratios in soils investigated for enhanced C sequestration. Soil Biol Biochem 34:997–1007

    Article  CAS  Google Scholar 

  • Batjes NH (1996) Total carbon and nitrogen in the soils of the world. Eur J Soil Sci 47:151–163

    Article  CAS  Google Scholar 

  • Beare MH, Parmelee RW, Hendrix PF, Cheng W, Coleman DC, Grossley DA Jr (1992) Microbial and faunal interactions and effects on litter nitrogen and decomposition in agroecosystems. Ecol Monogr 62:569–591

    Article  Google Scholar 

  • Berg B, McClaugherty C (2008) Plant litter. Decomposition, humus formation, carbon sequestration. Springer, Berlin

    Google Scholar 

  • Bousquet P, Peylin P, Ciais P, Quere CL, Friedlingstein P, Tans PP (2000) Regional changes in carbon di oxide fluxes of land and oceans since 1980. Science 290:1342–1346

    Article  CAS  PubMed  Google Scholar 

  • Bushby HVA, Marshall KC (1977) Water status of rhizobia in relation to their susceptibility to desiccation and to their protection by montmorillonite. J Gen Microbiol 99:19–27

    Article  Google Scholar 

  • Chefetz B, Tarchitzky J, Deshmukh AP, Hatcher PG, Chen Y (2002) Structural characterization of soil organic matter and humic acids in particle-size fractions of an agricultural soil. Soil Sci Soc Am J 66:129–141

    Article  CAS  Google Scholar 

  • Chotte JL, Ladd JN, Amato M (1998) Sites of microbial assimilation, and turnover of soluble and particulate 14C-labelled substrates decomposing in a clay soil. Soil Biol Biochem 30:205–218

    Article  CAS  Google Scholar 

  • Crawford RL (1981) Lignin biodegradation and transformation. Wiley, New York

    Google Scholar 

  • Dlugokencky E, Tans P (2016) Trends in atmospheric carbon dioxide, National Oceanic & Atmospheric Administration, Earth System Research Laboratory (NOAA/ESRL), available at: http://www.esrl.noaa.gov/gmd/ccgg/trends/global.html. Last accessed 28 Oct 2016

  • Drijber RA, Doran JW, Parkhurst AM, Lyon DJ (2000) Changes in soil microbial community structure with tillage under long-term wheat-fallow management. Soil Biol Biochem 32:1419–1430

    Article  CAS  Google Scholar 

  • Eriksson K-E, Blanchette RA, Ander P (1990) Microbial and enzymatic degradation of wood and wood components. Springer, Berlin

    Book  Google Scholar 

  • Eswaran H, Van Den Berg E, Reich P (1993) Organic carbon in soils of the world. Soil Sci Soc Am J 57:192–194

    Article  Google Scholar 

  • Feng Y, Motta AC, Reeves DW, Burmester CH, van Santen E, Osborne JA (2003) Soil microbial communities under conventional-till and no-till continuous cotton systems. Soil Biol Biochem 35:1693–1703

    Article  CAS  Google Scholar 

  • Freeman C, Ostle N, Kang H (2001) An enzymic “latch” on a global carbon store – a shortage of oxygen locks up carbon in peatlands by restraining a single enzyme. Nature 409:149

    Article  CAS  PubMed  Google Scholar 

  • Frey SD, Elliott ET, Paustian K (1999) Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients. Soil Biol Biochem 31:573–585

    Article  CAS  Google Scholar 

  • Frey SD, Gupta V, Elliott ET, Paustian K (2001) Protozoan grazing affects estimates of carbon utilization efficiency of the soil microbial community. Soil Biol Biochem 33:1759–1768

    Article  CAS  Google Scholar 

  • George TS, Richardson AE, Simpson RJ (2005) Behaviour of plant-derived extracellular phytase upon addition to soil. Soil Biol Biochem 37:977–988

    Article  CAS  Google Scholar 

  • Gonzalez-Gaya B, Fernandez-Pinos MC, Morales L, Mejanelle L, Abad E, Pina B, Duarte CM, Jimenez B, Dachs J (2016) High atmosphere-ocean exchange of semivolatile aromatic hydrocarbons. Nat Geosci 9:438–442

    Article  CAS  Google Scholar 

  • Guggenberger G, Frey SD, Six J, Paustian K, Elliott ET (1999) Bacterial and fungal cell-wall residues in conventional and no-tillage agroecosystems. Soil Sci Soc Am J 63:1188–1198

    Article  CAS  Google Scholar 

  • Gupta VVSR, Roper MM, Kirkegaard JA, Angus JF (1994) Changes in microbial biomass and organic matter levels during the first year of modified tillage and stubble management practices on a red Earth. Aust J Soil Res 32:1339–1354

    Article  Google Scholar 

  • Hassink J, Lebbink G, Van Veen JA (1991) Microbial biomass and activity of a reclaimed-polder soil under a conventional and a reduced-input farming system. Soil Biol Biochem 23:507–514

    Article  Google Scholar 

  • Haynes RJ, Beare MH (1997) Influence of six crop species on aggregate stability and some labile organic matter fractions. Soil Biol Biochem 29:1647–1653

    Article  CAS  Google Scholar 

  • Highley TL (1988) Cellulolytic activity of brown-rot and white-rot fungi on solid media. Holzforschung-Int J Biol Chem Phys Technol Wood 42:211–216

    CAS  Google Scholar 

  • Holland EA, Coleman DC (1987) Litter placement effects on microbial and organic matter dynamics in an agroecosystem. Ecology 68:425–433

    Article  Google Scholar 

  • Houghton RA (2000) A new estimate of global sources and sinks of carbon from land use change. Eos 81:S281

    Google Scholar 

  • Jastrow JD, Amonette JE, Bailey VL (2007) Mechanisms controlling soil carbon turnover and their potential application for enhancing carbon sequestration. Clim Chang 80:5–23

    Article  CAS  Google Scholar 

  • Jenny H (1980) The soil resource: origin and behavior. Springer, New York

    Book  Google Scholar 

  • Joos F, Spahni R (2008) Rates of change in natural and anthropogenic radiative forcing over the past 20,000 years. Proc Natl Acad Sci 105:1425–1430

    Article  CAS  PubMed  Google Scholar 

  • Lal R (2008) Sequestration of atmospheric CO2 in global carbon pools. Energy Environ Sci 1:86–100

    Article  CAS  Google Scholar 

  • Le Quéré C, Andrew RM, Canadell JG, Sitch S, Korsbakken JI, Peters GP, Manning AC, Boden TA, Tans PP, Houghton RA, Keeling RF, Alin S, Andrews OD, Anthoni P, Barbero L, Bopp L, Chevallier F, Chini LP, Ciais P, Currie K, Delire C, Doney SC, Friedlingstein P, Gkritzalis T, Harris I, Hauck J, Haverd V, Hoppema M, Goldewijk KK, Jain AK, Kato E, Körtzinger A, Landschützer P, Lefèvre N, Lenton A, Lienert S, Lombardozzi D, Melton JR, Metzl N, Millero F, Monteiro PMS, Munro DR, Nabel JEMS, Nakaoka S, Brien KO, Olsen A, Omar AM, Ono T, Perrot D, Poulter B, Rödenbeck C, Salisbury J, Schuster U, Schwinger J, Séférian R, Skjelvan I, Stocker BD, Sutton AJ, Takahashi T, Tien H, Tilbrook B, Laan-Luijkx V, Werf V, Viovy N, Walker AP, Wiltshire AJ, Zaehle S (2016) Global carbon budget 2016. Earth Syst Sci Data 8:605–649

    Article  Google Scholar 

  • Leake J, Johnson D, Donnelly D, Muckle G, Boddy L, Read D (2004) Networks of power and influence: the role of mycorrhizal mycelium in controlling plant communities and agroecosystem functioning. Can J Bot 82:1016–1045

    Article  Google Scholar 

  • Luo Y, White LW, Canadell JG, DeLucia EH, Ellsworth DS, Finzi A, Lichter J, Schlesinger WH (2003) Sustainability of terrestrial carbon sequestration: a case study in Duke Forest with inversion approach. Glob Biogeochem Cycles 17:1021

    Article  CAS  Google Scholar 

  • Lupwayi NZ, Rice WA, Clayton GW (1999) Soil microbial biomass and carbon dioxide flux under wheat as influenced by tillage and crop rotation. Can J Soil Sci 79:273–280

    Article  Google Scholar 

  • Martin JP, Haider K (1979) Biodegradation of 14C-labeled model and cornstalk lignins, phenols, model phenolase humic polymers, and fungal melanins as influenced by a readily available carbon source and soil. Appl Environ Microbiol 38:283–289

    PubMed  PubMed Central  CAS  Google Scholar 

  • Martin JP, Haider K (1986) Influence of mineral colloids on turnover rates of soil organic carbon. In: Huang PM, Shnitzer M (eds) Interactions of soil minerals with natural organics and microbes, SSSA Special Pub No. 17. SSSA, Madison, pp 283–304

    Google Scholar 

  • Martin JP, Filip Z, Haider K (1976) Effect of montmorillonite and humate on growth and metabolic activity of some actinomycetes. Soil Biol Biochem 8:409–413

    Article  CAS  Google Scholar 

  • ten Have R, Teunissen PJ (2001) Oxidative mechanisms involved in lignin degradation by white-rot fungi. Chem Rev 101:3397–3414

    Article  CAS  PubMed  Google Scholar 

  • Nakas JP, Klein DA (1979) Decomposition of microbial cell components in a semi-arid grassland soil. Appl Environ Microbiol 38:454–460

    PubMed  PubMed Central  CAS  Google Scholar 

  • Nilsson T, Daniel G (1989) Chemistry and microscopy of wood decay by some higher ascomycetes. Holzforschung-Int J Biol Chem Phys Technol Wood 43:11–18

    CAS  Google Scholar 

  • Ogle SM, Breidt FJ, Eve M, Paustian K (2003) Uncertainty in estimating land use and management impacts on soil organic carbon storage for US agricultural lands between 1982–1997. Glob Chang Biol 9:1521–1542

    Article  Google Scholar 

  • Parniske M (2008) Arbuscular mycorrhiza: the mother of plant root endosymbioses. Nat Rev Microbiol 6:763–775

    Article  CAS  PubMed  Google Scholar 

  • Parton WJ, Schimel DS, Cole CV, Ojima DS (1987) Analysis of factors controlling soil organic matter levels in Great Plains grasslands. Soil Sci Soc Am J 51:1173–1179

    Article  CAS  Google Scholar 

  • Payne WJ (1970) Energy yields and growth of heterotrophs. Ann Rev Microbiol 24:17–52

    Article  CAS  Google Scholar 

  • Peterson GA, Halvorson AD, Havlin JL, Jones OR, Lyon DJ, Tanaka DL (1998) Reduced tillage and increasing cropping intensity in the Great Plains conserves soil C. Soil Tillage Res 47:207–218

    Article  Google Scholar 

  • Perveen N, Barot S, Alvarez G, Klumpp K, Martin R, Rapaport A, Herfurth D, Louault F, Fontaine S (2014) Priming effect and microbial diversity in ecosystem functioning and response to global change: a modeling approach using the SYMPHONY model. Glob Chang Biol 20:1174–1190

    Article  PubMed  Google Scholar 

  • Prentice IC, Farqygar GD, Fasham JR, Goulden ML, Heimann M, Jaramillo VJ, Kheshgi HS, Quere CL, Scholes RJ, Wallace DWR (2001) The carbon cycle and atmospheric carbon di oxide. In: Houghton JT, Ding Y, Griggs DJ, Noguer M, van der Linden PJ, Dai X, Maskell K, Johnson CA (eds) Climate change 2001: the scientific basis (contribution of working group I to the third assessment report of the intergovernmental panel on climate change). Cambridge University Press, Cambridge

    Google Scholar 

  • Regnier P, Friedlingstein P, Ciais P, Mackenzie FT, Gruber N, Janssens IA, Laruelle GG, Lauerwald R, Luyssaert S, Andersson AJ, Arndt S, Arnosti C, Borges AV, Dale AW, Gallego-Sala A, Goddéris Y, Goossens N, Hartmann J, Heinze C, Ilyina T, Joos F, La Rowe DE, Leifeld J, Meysman FJR, Munhoven G, Raymond PA, Spahni R, Suntharalingam P, Thullner M (2013) Anthropogenic perturbation of the carbon fluxes from land to ocean. Nat Geosci 6:597–607

    Article  CAS  Google Scholar 

  • Rillig MC, Wright SF, Nichols KA, Schmidt WF, Torn MS (2001) Large contribution of arbuscular mycorrhizal fungi to soil carbon pools in tropical forest soils. Plant Soil 233:167–177

    Article  CAS  Google Scholar 

  • Rutherford PM, Juma NG (1992) Influence of soil texture on protozoa-induced mineralization of bacterial carbon and nitrogen. Can J Soil Sci 72:183–200

    Article  CAS  Google Scholar 

  • Schimel JP, Weintraub MN (2003) The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model. Soil Biol Biochem 35:549–563

    Article  CAS  Google Scholar 

  • Schimel DS, House JI, Hibbard KA, Bousquet P, Ciais P, Peylin P, Braswell BH, Apps MJ, Baker D, Bondeau A, Canadell J, Chukina G, Cramer W, Denning AS, Field CB, Friedlingstein P, Goodale C, Heimann M, Houghton RA, Melillo JM, Moore B III, Murdiyarso D, Noble I, Pacala SW, Prentice IC, Raupach MR, Rayner PJ, Scholes RJ, Steffen WL, Wirth C (2001) Recent patterns and mechanisms of carbon exchange by terrestrial ecosystems. Nature 414:169–172

    Article  CAS  Google Scholar 

  • Schnurer J, Clarholm M, Rosswall T (1985) Microbial biomass and activity in an agricultural soil with different organic matter contents. Soil Biol Biochem 17:611–618

    Article  Google Scholar 

  • Scripps: The Keeling Curve (2013) Available at: http://keelingcurve.ucsd.edu/. Last accessed 7 Nov 2013

  • Shen S, Tu S-I, Taylor RW (2002) Interactions of enzymes with clays and applications in bioremediation. In: Soil mineralogy with environmental applications. Soil Science Society of America, Madison, pp 795–817

    Google Scholar 

  • Simpson RT, Frey SD, Six J, Thiet RK (2004) Preferential accumulation of microbial carbon in aggregate structures of no tillage soils. Soil Sci Soc Am J 68:1249–1255

    Article  CAS  Google Scholar 

  • Six J, Conant RT, Paul EA, Paustian K (2002) Stabilization mechanisms of soil organic matter: implications for C-saturation of soils. Plant Soil 241:155–176

    Article  CAS  Google Scholar 

  • Six J, Frey SD, Thiet RK, Batten KM (2006) Bacterial and fungal contributions to carbon sequestration in agroecosystems. Soil Sci Soc Am J 70:555–569

    Article  CAS  Google Scholar 

  • Smith SE, Read DJ (2008) Mycorrhizal symbiosis. Academic, London

    Google Scholar 

  • Suberkropp K, Weyers H (1996) Application of fungal and bacterial production methodologies to decomposing leaves in streams. Appl Environ Microbiol 62:1610–1615

    PubMed  PubMed Central  CAS  Google Scholar 

  • Swanston C, Homann PS, Caldwell BA, Myrold DD, Ganio L, Sollins P (2004) Long-term effects of elevated nitrogen on forest soil organic matter stability. Biogeochemistry 70:229–252

    Article  Google Scholar 

  • Sylvia DM, Fuhrmann JJ, Hartel PG, Zuberer DA (2005) Principles and applications of soil microbiology, 2nd edn. Pearson Education, Upper Saddle River

    Google Scholar 

  • Stotzky G, Rem LT (1966) Influence of clay minerals on microorganisms. I. Montmorillonite and kaolinite on bacteria. Can J Microbiol 12:547–563

    Article  CAS  PubMed  Google Scholar 

  • van Veen AJ, Ladd JN, Amato M (1985) Turnover of carbon and nitrogen through the microbial biomass in a sandy loam and a clay soil incubated with 14C(U) glucose and 15N(NH4)2SO4 under different moisture regimes. Soil Biol Biochem 17:747–756

    Article  Google Scholar 

  • Vetter YA, Deming JW, Jumars PA, Krieger-Brockett BB (1998) A predictive model of bacterial foraging by means of freely released extracellular enzymes. Microb Ecol 36:75–92

    Article  CAS  PubMed  Google Scholar 

  • Wardle DA (1995) Impacts of disturbance on detritus food webs in agro-ecosystems of contrasting tillage and weed management practices. Adv Ecol Res 26:107–185

    Google Scholar 

  • Waring BG, Averill C, Hawkes CV (2013) Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models. Ecol Lett 16:887–894

    Article  PubMed  Google Scholar 

  • Wright SF, Upadhyaya A (1996) Extraction of an abundant and unusual protein from soil and comparison with hyphal protein of arbuscular mycorrhizal fungi. Soil Sci 161:575–586

    Article  CAS  Google Scholar 

  • Wright SF, Upadhyaya A (1998) A survey of soils for aggregate stability and glomalin, a glycoprotein produced by hyphae of arbuscular mycorrhizal fungi. Plant Soil 198:97–107

    Article  CAS  Google Scholar 

  • Zhu Y-G, Miller RM (2003) Carbon cycling by arbuscular mycorrhizal fungi in soil–plant systems. Trends Plant Sci 8:407–409

    Article  CAS  PubMed  Google Scholar 

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The authors gratefully acknowledge the financial assistance received from UGC-CAS.

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Mehar, S.K., Sundaramoorthy, S. (2018). Carbon Sequestration and the Significance of Soil Fungi in the Process. In: Gehlot, P., Singh, J. (eds) Fungi and their Role in Sustainable Development: Current Perspectives. Springer, Singapore. https://doi.org/10.1007/978-981-13-0393-7_26

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