Volume 12, supplement issue 1, December 2011
Beyond the Genome 2011
132 articles in this issue
-
-
Characterizing triple-negative breast cancer tumors
Authors
- Sam Aparicio
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I2
-
Are clinical genomes already becoming semi-routine for patient care?
Authors
- Mark Boguski
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I3
-
Interrogating the architecture of cancer genomes
Authors
- Peter Campbell
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I4
-
Genome-forward oncology: how do we get there?
Authors
- Matthew Ellis
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I5
-
NIAID genomics programs and global health
Authors
- Maria Y Giovanni
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I6
-
Microbial reference genomes for human metagenomics
Authors
- Sarah K Highlander
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I7
-
Exome sequencing as a tool to discover genes for heart attack risk and blood lipids
Authors
- Sekar Kathiresan
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I8
-
Next-generation clinical sequencing in a children’s hospital
Authors
- Stephen Kingsmore
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I9
-
A glimpse at tumor genome evolution
Authors
- Elaine R Mardis
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I10
-
Progress in understanding the human microbiome
Authors
- Karen Nelson
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I11
-
Comparative genomic analysis of mouse and human mammary tumors
Authors
- Charles M Perou
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I12
-
Reconstructing microbial communities
Authors
- Mihai Pop
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I13
-
Next-generation human genetics
Authors
- Jay Shendure
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I14
-
Metatranscriptomics of the human gut microbiome
Authors
- Thomas Sichertz Pontén
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I15
-
De novo mutations in mental retardation
Authors
- Joris A Veltman
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I16
-
Comparative analysis of the vaginal microbiome in health and disease
Authors (first, second and last of 13)
- Bryan A White
- Andres M Gomez
- Brenda A Wilson
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I17
-
The Joint Center for Structural Genomics: exploration of the human gut microbiome
Authors
- Ian Wilson
- Content type: Invited speaker presentation
- Published: 19 September 2011
- Article: I18
-
RNA-Seq methods for imperfect samples: development, evaluation and applications
Authors (first, second and last of 12)
- Xian Adiconis
- Lin Fan
- Joshua Z Levin
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P1
-
Viral diversity in children with diarrhea in Gambia
Authors
- Irina Astrovskaya
- Bo Liu
- Mihai Pop
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P2
-
COSMIC: the catalogue of somatic mutations in cancer
Authors (first, second and last of 14)
- Nidhi Bindal
- Simon A Forbes
- Andrew P Futreal
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P3
-
A novel functional variant in 8q24 is associated with regulation of prostate stem cell antigen (PSCA) gene expression and bladder cancer risk
Authors (first, second and last of 22)
- Yi-Ping Fu
- Indu Kohaar
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P4
-
Evaluating short-read sequence data from the highly redundant, novel transcriptome of Polarella glacialis
Authors (first, second and last of 4)
- Theodore R Gibbons
- Gregory T Concepcion
- Charles F Delwiche
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P5
-
A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation
Authors
- Jingwei Jiang
- Jun Li
- Frederick C Leung
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P6
-
Functional exploration of CCNE1 splicing forms as a possible link to bladder cancer susceptibility
Authors (first, second and last of 5)
- Indu Kohaar
- Alexandra Scott-Johnson
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P7
-
ScaffViz: visualizing metagenome assemblies
Authors
- Sergey Koren
- Todd Treangen
- Mihai Pop
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P8
-
Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics
Authors
- David M Kristensen
- Arcady R Mushegian
- Eugene V Koonin
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P9
-
Genetic basis of common human disease: insight into the role of nonsynonymous SNPs from genome-wide association studies
Authors
- Lipika R Pal
- John Moult
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P10
-
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
Authors (first, second and last of 5)
- Bo Liu
- Theodore Gibbons
- Mihai Pop
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P11
-
The mechanisms and possible significance of upregulation of stomatin expression by hypoxia and/or glucocorticoids
Authors (first, second and last of 9)
- Ji-Cheng Chen
- Hao-Yu Cai
- Jian Lu
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P12
-
Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency
Authors (first, second and last of 27)
- Alan F Rope
- Kai Wang
- Gholson J Lyon
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P13
-
Evolutionary and functional relationships revealed by the dha regulon predicted by genomic context analysis
Authors (first, second and last of 4)
- Marinalva Martins-Pinheiro
- Wanessa Cristina Lima
- Carlos FM Menck
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P14
-
Prostate stem cell antigen (PSCA) and risk of bladder cancer: linking genotypes to functional mechanisms
Authors (first, second and last of 6)
- Adam Mumy
- Indu Kohaar
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P15
-
Metabolic pathways are affected differently in Saccharomyces cerevisiae thiol peroxidase mutants during redox stress with hydrogen peroxide
Authors (first, second and last of 4)
- Amy L Olex
- Brian M Westwood
- Jacquelyn S Fetrow
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P16
-
Metastats: an improved statistical method for analysis of metagenomic data
Authors
- Joseph N Paulson
- Mihai Pop
- Hector Corrada Bravo
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P17
-
Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling
Authors (first, second and last of 7)
- Patricia Porter-Gill
- Yi-Ping Fu
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P18
-
An unusual suspect: an uncommon human-specific synonymous coding variant within the UGT1A6 gene explains a GWAS signal and protects against bladder cancer
Authors (first, second and last of 38)
- Wei Tang
- Yi-Ping Fu
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P19
-
A comprehensive census of horizontal gene transfers from prokaryotes to unikonts
Authors (first, second and last of 4)
- Pere Puigbò
- Sergei Mekhedov
- Eugene V Koonin
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P20
-
A genetic survival network for glioblastoma multiforme
Authors
- Andy Lin
- Desmond J Smith
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P21
-
Building a protein interaction (PIN) database for autism candidate genes
Authors
- Catherine Croft Swanwick
- Sharmila Banerjee-Basu
- Content type: Poster Presentation
- Published: 19 September 2011
- Article: P22
-
Whole transcriptome sequencing of normal and tumor bladder tissue samples
Authors
- Wei Tang
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P23
-
Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets
Authors
- McAnthony Tarway
- Wei Tang
- Ludmila Prokunina-Olsson
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P24
-
MetAMOS: a metagenomic assembly and analysis pipeline for AMOS
Authors (first, second and last of 6)
- Todd J Treangen
- Sergey Koren
- Mihai Pop
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P25
-
The mutation spectrum in Indian patients with Gaucher disease
Authors (first, second and last of 6)
- Vartika Bisariya
- Pramod K Mistry
- Madhulika Kabra
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P26
-
Boundary distinction interpretation of microarray data via discrete correlate summation
Authors (first, second and last of 5)
- Brian M Westwood
- Amy L Olex
- Jacquelyn S Fetrow
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P27
-
A computational approach to identify transposable element insertions in cancer cells
Authors
- Israel T Silva
- Daniel G Pinheiro
- Wilson A Silva Jr
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P28
-
Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility
Authors
- Chen-Hsin Yu
- John Moult
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P29
-
Phylogenomics of prokaryotic ribosomal proteins
Authors (first, second and last of 4)
- Natalya Yutin
- Kira S Makarova
- Eugene V Koonin
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P30
-
Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?
Authors
- Justin M Zook
- Marc Salit
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P31
-
Deciphering the reproductive protein-protein interaction network in Anopheles gambiae with Drosophila melanogaster as a framework
Authors (first, second and last of 4)
- Daniel Achinko
- Paul Mireji
- Dan Masig
- Content type: Poster presentation
- Published: 19 September 2011
- Article: P32