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Assessing Phosphorylation of STAT Transcription Factors in Mouse Innate Lymphoid Cells

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Innate Lymphoid Cells

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2121))

Abstract

Innate lymphoid cells (ILCs) ensure protection against pathogens by quickly reacting to the alterations of the cytokine milieu taking place upon infection. More than 50 cytokines and growth factors activate the Janus kinases (JAKs), leading to phosphorylation of members of the signal transducer and activator of transcription (STAT) family. Activation of STATs induces specific transcriptional programs which are associated with distinct cellular outcomes. Thus, an efficient measurement of rapid STAT phosphorylation enables not only to dissect the spectrum of cytokine sensitivity among ILC subsets but also to pinpoint specific transcriptional programs and cellular functions initiated after activation. Using this method, we have previously dissected the downstream events of Interleukin (IL)-23 and IL-12 signaling in ILCs, shedding light on the differential usage of STATs among ILC subsets. Here, we provide an optimized and detailed protocol describing how to analyze phosphorylation of STAT transcription factors in murine NK and ILC subsets isolated from different tissues.

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References

  1. Spits H, Artis D, Colonna M et al (2013) Innate lymphoid cells—a proposal for uniform nomenclature. Nat Rev Immunol 13:145–149. https://doi.org/10.1038/nri3365

    Article  CAS  PubMed  Google Scholar 

  2. Vivier E, Artis D, Colonna M et al (2018) Innate lymphoid cells: 10 years on. Cell 174:1054–1066. https://doi.org/10.1016/j.cell.2018.07.017

    Article  CAS  PubMed  Google Scholar 

  3. Sun JC, Lanier LL (2011) NK cell development, homeostasis and function: parallels with CD8+ T cells. Nat Rev Immunol 11:645–657. https://doi.org/10.1038/nri3044

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Cortez VS, Colonna M (2016) Diversity and function of group 1 innate lymphoid cells. Immunol Lett 179:19–24. https://doi.org/10.1016/j.imlet.2016.07.005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Vosshenrich CAJ, Di Santo JP (2013) Developmental programming of natural killer and innate lymphoid cells. Curr Opin Immunol 25:130–138. https://doi.org/10.1016/j.coi.2013.02.002

    Article  CAS  PubMed  Google Scholar 

  6. Vivier E, Raulet DH, Moretta A et al (2011) Innate or adaptive immunity? The example of natural killer cells. Science 331:44–49. https://doi.org/10.1126/science.1198687

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. McKenzie ANJ (2014) Type-2 innate lymphoid cells in asthma and allergy. Ann Am Thorac Soc 11(Suppl 5):S263–S270. https://doi.org/10.1513/AnnalsATS.201403-097AW

    Article  PubMed  PubMed Central  Google Scholar 

  8. Kabata H, Moro K, Koyasu S (2018) The group 2 innate lymphoid cell (ILC2) regulatory network and its underlying mechanisms. Immunol Rev 286:37–52. https://doi.org/10.1111/imr.12706

    Article  CAS  PubMed  Google Scholar 

  9. Cherrier M, Eberl G (2012) The development of LTi cells. Curr Opin Immunol 24:178–183. https://doi.org/10.1016/j.coi.2012.02.003

    Article  CAS  PubMed  Google Scholar 

  10. Withers DR, Hepworth MR (2017) Group 3 innate lymphoid cells: communications hubs of the intestinal immune system. Front Immunol 8:1298. https://doi.org/10.3389/fimmu.2017.01298

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. von Moltke J, Locksley RM (2014) I-L-C-2 it: type 2 immunity and group 2 innate lymphoid cells in homeostasis. Curr Opin Immunol 31:58–65. https://doi.org/10.1016/j.coi.2014.09.009

    Article  CAS  Google Scholar 

  12. Sciumè G, Shih H-Y, Mikami Y et al (2017) Epigenomic views of innate lymphoid cells. Front Immunol 8:1579. https://doi.org/10.3389/fimmu.2017.01579

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Klose CSN, Diefenbach A (2014) Transcription factors controlling innate lymphoid cell fate decisions. Curr Top Microbiol Immunol 381:215–255. https://doi.org/10.1007/82_2014_381

    Article  CAS  PubMed  Google Scholar 

  14. De Obaldia ME, Bhandoola A (2015) Transcriptional regulation of innate and adaptive lymphocyte lineages. Annu Rev Immunol 33:607–642. https://doi.org/10.1146/annurev-immunol-032414-112032

    Article  CAS  PubMed  Google Scholar 

  15. Levy DE, Darnell JE (2002) Stats: transcriptional control and biological impact. Nat Rev Mol Cell Biol 3:651–662. https://doi.org/10.1038/nrm909

    Article  CAS  PubMed  Google Scholar 

  16. Villarino AV, Kanno Y, O’Shea JJ (2017) Mechanisms and consequences of Jak-STAT signaling in the immune system. Nat Immunol 18:374–384. https://doi.org/10.1038/ni.3691

    Article  CAS  PubMed  Google Scholar 

  17. Kovanen PE, Leonard WJ (2004) Cytokines and immunodeficiency diseases: critical roles of the gamma(c)-dependent cytokines interleukins 2, 4, 7, 9, 15, and 21, and their signaling pathways. Immunol Rev 202:67–83. https://doi.org/10.1111/j.0105-2896.2004.00203.x

    Article  CAS  PubMed  Google Scholar 

  18. Stabile H, Scarno G, Fionda C et al (2018) JAK/STAT signaling in regulation of innate lymphoid cells: the gods before the guardians. Immunol Rev 286:148–159. https://doi.org/10.1111/imr.12705

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Huntington ND (2014) The unconventional expression of IL-15 and its role in NK cell homeostasis. Immunol Cell Biol 92:210–213. https://doi.org/10.1038/icb.2014.1

    Article  CAS  PubMed  Google Scholar 

  20. Gotthardt D, Sexl V (2016) STATs in NK-cells: the good, the bad, and the ugly. Front Immunol 7:694. https://doi.org/10.3389/fimmu.2016.00694

    Article  CAS  PubMed  Google Scholar 

  21. Krutzik PO, Nolan GP (2003) Intracellular phospho-protein staining techniques for flow cytometry: monitoring single cell signaling events. Cytometry A 55:61–70. https://doi.org/10.1002/cyto.a.10072

    Article  CAS  PubMed  Google Scholar 

  22. Miyagi T, Lee S-H, Biron CA (2010) Intracellular staining for analysis of the expression and phosphorylation of signal transducers and activators of transcription (STATs) in NK cells. Methods Mol Biol 612:159–175. https://doi.org/10.1007/978-1-60761-362-6_11

    Article  CAS  PubMed  Google Scholar 

  23. Villarino AV, Sciumè G, Davis FP et al (2017) Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells. J Exp Med 214:2999–3014. https://doi.org/10.1084/jem.20150907

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Mikami Y, Scarno G, Zitti B et al (2018) NCR+ ILC3 maintain larger STAT4 reservoir via T-BET to regulate type 1 features upon IL-23 stimulation in mice. Eur J Immunol 48:1174. https://doi.org/10.1002/eji.201847480

    Article  CAS  PubMed  Google Scholar 

  25. Takahashi H, Kanno T, Nakayamada S et al (2012) TGF-β and retinoic acid induce the microRNA miR-10a, which targets Bcl-6 and constrains the plasticity of helper T cells. Nat Immunol 13:587–595. https://doi.org/10.1038/ni.2286

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Moro K, Ealey KN, Kabata H et al (2015) Isolation and analysis of group 2 innate lymphoid cells in mice. Nat Protoc 10:792–806. https://doi.org/10.1038/nprot.2015.047

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

G.S. is supported by the Italian Association for Cancer Research (AIRC), MFAG 2018 (Project Code: 21311); and Institut Pasteur (France), Transversal Research Program; PTR-113-17.

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Correspondence to Giuseppe Sciumè .

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Scarno, G., Pietropaolo, G., Di Censo, C., Peruzzi, G., Sciumè, G. (2020). Assessing Phosphorylation of STAT Transcription Factors in Mouse Innate Lymphoid Cells. In: Amarnath, S. (eds) Innate Lymphoid Cells . Methods in Molecular Biology, vol 2121. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0338-3_6

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  • DOI: https://doi.org/10.1007/978-1-0716-0338-3_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0337-6

  • Online ISBN: 978-1-0716-0338-3

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