Skip to main content

A Real-Time PCR Approach Based on SPF10 Primers and the INNO-LiPA HPV Genotyping Extra Assay for the Detection and Typing of Human Papillomavirus

  • Protocol
  • First Online:
Cervical Cancer

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1249))

Abstract

A highly sensitive SPF10 real-time PCR was developed to achieve simultaneous amplification and detection of the human papillomavirus (HPV) target. That way, LiPA analysis of the HPV-negative samples can be avoided, reducing workload and cost. Here, we describe in detail a SYBR Green I-based real-time PCR assay based on SPF10 primers using the LightCycler® 480 system to generate and detect HPV amplicons, which are compatible with the LiPA assay.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Arbyn M, Castellsagué X, de Sanjosé S, Bruni L, Saraiya M, Bray F, Ferlay J (2011) Worldwide burden of cervical cancer in 2008. Ann Oncol 22:2675–2686

    Article  PubMed  CAS  Google Scholar 

  2. Bosch FX, Lorincz A, Muñoz N, Meijer CJ, Shah KV (2002) The causal relation between human papillomavirus and cervical cancer. J Clin Pathol 55:244–265

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  3. Boulet GA, Horvath CA, Berghmans S, Bogers J (2008) Human papillomavirus in cervical cancer screening: important role as biomarker. Cancer Epidemiol Biomarkers Prev 17:810–817

    Article  PubMed  CAS  Google Scholar 

  4. Kleter B, van Doorn LJ, ter Schegget J, Schrauwen L, van Krimpen K, Burger M, ter Harmsel B, Quint W (1998) Novel short-fragment PCR assay for highly sensitive broad-spectrum detection of anogenital human papillomaviruses. Am J Pathol 153:1731–1739

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  5. Kleter B, van Doorn LJ, Schrauwen L, Molijn A, Sastrowijoto S, ter Schegget J, Lindeman J, ter Harmsel B, Burger M, Quint W (1999) Development and clinical evaluation of a highly sensitive PCR-reverse hybridization line probe assay for detection and identification of anogenital human papillomavirus. J Clin Microbiol 37:2508–2517

    PubMed  CAS  PubMed Central  Google Scholar 

  6. Galan-Sanchez F, Hernández-Menendez M, De Los Rios Hernandez MA, Rodriguez-Iglesias M (2011) Performance of the New INNO-LiPA HPV extra to genotype human papillomavirus in cervical cell specimens. Acta Cytol 55:341–343

    Article  PubMed  CAS  Google Scholar 

  7. Martró E, Valencia MJ, Tarrats A, Castellà E, Llatjós M, Franquesa S, Matas L, Ausina V (2012) Comparison between two human papillomavirus genotyping assays targeting the L1 or E6/E7 region in cervical cancer biopsies. Enferm Infecc Microbiol Clin 30:225–229

    Article  PubMed  Google Scholar 

  8. Castellsagué X, Iftner T, Roura E, Vidart JA, Kjaer SK, Bosch FX, Muñoz N, Palacios S, San Martin Rodriguez M, Serradell L, Torcel-Pagnon L, Cortes J, CLEOPATRE Spain Study Group (2012) Prevalence and genotype distribution of human papillomavirus infection of the cervix in Spain: the CLEOPATRE study. J Med Virol 84:947–956

    Article  PubMed  Google Scholar 

  9. Kovanda A, Juvan U, Sterbenc A, Kocjan BJ, Seme K, Jancar N, Vrtacnik-Bokal E, Poljak M (2009) Pre-vaccination distribution of human papillomavirus (HPV) genotypes in women with cervical intraepithelial neoplasia grade 3 (CIN 3) lesions in Slovenia. Acta Dermatovenerol Alp Panonica Adriat 18:47–52

    CAS  Google Scholar 

  10. Micalessi MI, Boulet GA, Vorsters A, De Wit K, Jannes G, Mijs W, Ieven M, Van Damme P, Bogers JJ (2013) A real-time PCR approach based on SPF10 primers and the INNO-LiPA HPV Genotyping Extra assay for the detection and typing of human papillomavirus. J Virol Methods 187:166–171

    Article  PubMed  CAS  Google Scholar 

  11. Clavel C, Masure M, Bory JP, Putaud I, Mangeonjean C, Lorenzato M, Nazeyrollas P, Gabriel R, Quereux C, Birembaut P (2001) Human papillomavirus testing in primary screening for the detection of high-grade cervical lesions: a study of 7932 women. Br J Cancer 84:1616–1623

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  12. Ratnam S, Franco EL, Ferenczy A (2000) Human papillomavirus testing for primary screening of cervical cancer precursors. Cancer Epidemiol Biomarkers Prev 9:945–951

    PubMed  CAS  Google Scholar 

  13. Riethmuller D, Gay C, Bertrand X, Bettinger D, Schaal JP, Carbillet JP, Lassabe C, Arveux P, Seilles E, Mougin C (1999) Genital human papillomavirus infection among women recruited for routine cervical cancer screening or for colposcopy determined by Hybrid Capture II and polymerase chain reaction. Diagn Mol Pathol 8:157–164

    Article  PubMed  CAS  Google Scholar 

  14. Schneider A, Hoyer H, Lotz B, Leistritza S, Kühne-Heid R, Nindl I, Müller B, Haerting J, Dürst M (2000) Screening for high-grade cervical intra-epithelial neoplasia and cancer by testing for high-risk HPV, routine cytology or colposcopy. Int J Cancer 89:529–534

    Article  PubMed  CAS  Google Scholar 

  15. Karsai A, Müller S, Platz S, Hauser MT (2002) Evaluation of a homemade SYBR green I reaction mixture for real-time PCR quantification of gene expression. Biotechniques 32:790–792, 794–796

    Google Scholar 

  16. Morrison TB, Weis JJ, Wittwer CT (1998) Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques 24:954–958, 960, 962

    PubMed  CAS  Google Scholar 

  17. Gibson UE, Heid CA, Williams PM (1996) A novel method for real time quantitative RT-PCR. Genome Res 6:995–1001

    Article  PubMed  CAS  Google Scholar 

  18. Heid CA, Stevens J, Livak KJ, Williams PM (1996) Real time quantitative PCR. Genome Res 6:986–994

    Article  PubMed  CAS  Google Scholar 

  19. Ririe KM, Rasmussen RP, Wittwer CT (1997) Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem 245:154–160

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgement

This work was financially supported by the Industrial Research Fund of the University of Antwerp (IOF/SBO 3501/3494) and Innogenetics NV. We would like to thank D. De Rijck for his assistance with the figures.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M. Isabel Micalessi .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this protocol

Cite this protocol

Micalessi, M.I., Boulet, G.A., Bogers, J. (2015). A Real-Time PCR Approach Based on SPF10 Primers and the INNO-LiPA HPV Genotyping Extra Assay for the Detection and Typing of Human Papillomavirus. In: Keppler, D., Lin, A. (eds) Cervical Cancer. Methods in Molecular Biology, vol 1249. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2013-6_2

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-2013-6_2

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2012-9

  • Online ISBN: 978-1-4939-2013-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics