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Methodology to Study NF-κB/RelA Ubiquitination In Vivo

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NF-kappa B

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1280))

Abstract

Nuclear factor-kappa B (NF-κB) is a family of transcription factors that regulate immune responses, cell proliferation, differentiation, and survival. Activity of the NF-κΒ pathway on a cellular level is tightly controlled through various mechanisms, one of which is the ubiquitin-dependent degradation of chromatin-bound NF-κB subunits. In general, the ubiquitination of NF-κB regulates the duration of gene transcription activated in response to inflammatory signals. In this article, we present protocols to examine the in vivo ubiquitination status of RelA, a critical protein of the NF-κB family.

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References

  1. Karin M, Greten FR (2005) NF-κB: linking inflammation and immunity to cancer development and progression. Nat Rev Immunol 5(10):749–759

    Article  CAS  PubMed  Google Scholar 

  2. Hayden MS, Ghosh S (2008) Shared principles in NF-κB signaling. Cell 132(3):344–362

    Article  CAS  PubMed  Google Scholar 

  3. Karin M (2006) Nuclear factor-κB in cancer development and progression. Nature 441(7092):431–436

    Article  CAS  PubMed  Google Scholar 

  4. Nelson DE, Ihekwaba AE, Elliott M, Johnson JR, Gibney CA, Foreman BE, Nelson G, See V, Horton CA, Spiller DG, Edwards SW, McDowell HP, Unitt JF, Sullivan E, Grimley R, Benson N, Broomhead D, Kell DB, White MR (2004) Oscillations in NF-κB signaling control the dynamics of gene expression. Science 306(5696):704–708

    Article  CAS  PubMed  Google Scholar 

  5. Mao X, Gluck N, Li D, Maine GN, Li H, Zaidi IW, Repaka A, Mayo MW, Burstein E (2009) GCN5 is a required cofactor for a ubiquitin ligase that targets NF-κB/RelA. Genes Dev 23(7):849–861

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  6. Li H, Wittwer T, Weber A, Schneider H, Moreno R, Maine GN, Kracht M, Schmitz ML, Burstein E (2012) Regulation of NF-κB activity by competition between RelA acetylation and ubiquitination. Oncogene 31(5):611–623

    PubMed Central  CAS  PubMed  Google Scholar 

  7. Li H, Chan L, Bartuzi P, Melton SD, Weber A, Ben-Shlomo S, Varol C, Raetz M, Mao X, Starokadomskyy P, van Sommeren S, Mokadem M, Schneider H, Weisberg R, Westra HJ, Esko T, Metspalu A, Kumar V, Faubion WA, Yarovinsky F, Hofker M, Wijmenga C, Kracht M, Franke L, Aguirre V, Weersma RK, Gluck N, van de Sluis B, Burstein E (2014) Copper metabolism domain-containing 1 represses genes that promote inflammation and protects mice from colitis and colitis-associated cancer. Gastroenterology 147(1):184–195.e3

    Article  CAS  PubMed  Google Scholar 

  8. Maine GN, Gluck N, Zaidi IW, Burstein E (2009) Bimolecular affinity purification (BAP): tandem affinity purification using two protein baits. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot5318

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Correspondence to Ezra Burstein .

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Li, H., Starokadomskyy, P., Burstein, E. (2015). Methodology to Study NF-κB/RelA Ubiquitination In Vivo. In: May, M. (eds) NF-kappa B. Methods in Molecular Biology, vol 1280. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2422-6_22

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  • DOI: https://doi.org/10.1007/978-1-4939-2422-6_22

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2421-9

  • Online ISBN: 978-1-4939-2422-6

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