Skip to main content

Resistance Breeding Through RNA Silencing of Host Factors Involved in Virus Replication

  • Protocol
  • First Online:
Antiviral Resistance in Plants

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2028))

Abstract

RNA silencing is a sequence-specific suppression of gene expression conserved in eukaryotes including fungi, plants, and animals. Based on this mechanism, crop improvements have been made to confer pathogen resistance and abiotic stress tolerance. Here we have applied this technique to produce virus resistant tomato plants using host genes involved in viral replication. Tomato homologs of Arabidopsis TOM1 involved in tobamovirus replication has been isolated and used to construct the plasmids that carried inverted repeats of the genes for induction of RNA silencing. Tomato plants were transformed by the plasmids via Agrobacterium, and tested for virus resistance. Actually, the T2 and T3 plants showed resistance to tomato mosaic virus. Here we describe the method to construct RNA silencing-inducing plasmids, to transform tomato plants and to check the introduction of transgenes and virus resistance.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Nagy PD (2008) Yeast as a model host to explore plant virus-host interactions. Annu Rev Phytopathol 46:217–242

    Article  CAS  PubMed  Google Scholar 

  2. Hashimoto M, Neriy Y, Yamaji Y, Namba S (2016) Recessive resistance to plant viruses: potential resistance genes beyond translation initiation factors. Front Microbiol 7:1695. https://doi.org/10.3389/fmicb.2016.01695

    Article  PubMed  PubMed Central  Google Scholar 

  3. Yamanaka T, Ohta T, Takahashi M, Meshi T, Schmidt R, Dean C, Naito S, Ishikawa M (2000) TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein. Proc Natl Acad Sci U S A 97:10107–10112. https://doi.org/10.1073/pnas.170295097

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Ishibashi K, Ishikawa M (2016) Replication of tobamovirus RNA. Annu Rev Phytopathol 54:55–78. https://doi.org/10.1146/annurev-phyto-080615-100217

    Article  CAS  PubMed  Google Scholar 

  5. Yamanaka T, Imai T, Satoh R, Kawashima A, Takahashi M, Tomita K, Kubota K, Meshi T, Naito S, Ishikawa M (2002) Complete inhibition of tobamovirus multiplication by simultaneous mutations in two homologous host genes. J Virol 76:2491–2497

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Asano M, Satoh R, Mochizuki A, Tsuda S, Yamanaka T, Nishiguchi M, Hirai K, Meshi T, Naito S, Ishikawa M (2005) Tobamovirus-resistant tobacco generated by RNA interference directed against host genes. FEBS Lett 579:4479–4484

    Article  CAS  PubMed  Google Scholar 

  7. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806–811

    Article  CAS  PubMed  Google Scholar 

  8. Kennerdell JR, Carthew RW (1998) Use of dsRNA-mediated genetic interference to demonstrate that frizzled and frizzled 2 act in the wingless pathway. Cell 95(7):1017–1026

    Article  CAS  PubMed  Google Scholar 

  9. Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363–366

    Article  CAS  PubMed  Google Scholar 

  10. Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404:293–296

    Article  CAS  PubMed  Google Scholar 

  11. Baulcombe DC (2004) RNA silencing in plants. Nature 431:356–363

    Article  CAS  PubMed  Google Scholar 

  12. Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950–952

    Article  CAS  PubMed  Google Scholar 

  13. Voinnet O (2001) RNA silencing as a plant immune system against viruses. Trends Genet 17:449–459

    Article  CAS  PubMed  Google Scholar 

  14. Waterhouse PM, Wang MB, Lough T (2001) Gene silencing as an adaptive defence against viruses. Nature 411:834–842

    Article  CAS  PubMed  Google Scholar 

  15. Ali ME, Ishii Y, Taniguchi J, Waliullah S, Kobayashi K, Yaeno T, Yamaoka N, Nishiguchi M (2018) Conferring virus resistance in tomato by RNA silencing of each of three tomato homologs of TOM1 from Arabidopsis. Arch Virol 163:1357–1362. https://doi.org/10.1007/s00705-018-3747-4

    Article  CAS  PubMed  Google Scholar 

  16. Ohno T, Aoyagi M, Yamanashi Y, Saito H, Ikawa S, Meshi T, Okada Y (1984) Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and comparison with the common strain genome. J Biochem 96:1915–1923

    Article  CAS  PubMed  Google Scholar 

  17. Koenig R (1981) Indirect ELISA methods for the broad specificity detection of plant viruses. J Gen Virol 55:53–62

    Article  Google Scholar 

Download references

Acknowledgments

We are grateful to Dr. H. Nyunoya for the advice on tomato transformation. This work was supported by the Program for Promotion of Basic and Applied Research in Bio-oriented Industry (BRAIN) and the Ministry of Education, Culture, Sports and Technology of Japan with the Grant-in-Aid for Scientific Research for Scientific Research (C), No. 24580065 to MN.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Masamichi Nishiguchi .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Nishiguchi, M., Ali, E.M., Chen, H., Ishikawa, M., Kobayashi, K. (2019). Resistance Breeding Through RNA Silencing of Host Factors Involved in Virus Replication. In: Kobayashi, K., Nishiguchi, M. (eds) Antiviral Resistance in Plants. Methods in Molecular Biology, vol 2028. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9635-3_14

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-9635-3_14

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9634-6

  • Online ISBN: 978-1-4939-9635-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics