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Comparative Approach to Analysis of Gene Essentiality

  • Protocol
Microbial Gene Essentiality: Protocols and Bioinformatics

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 416))

Abstract

A collection of chapters assembled in this volume provides an illustration of remarkable technological progress in genome-scale essentiality analysis in a variety of microbial species. In accord with other genomic techniques, one may anticipate that the volume of essentiality data will continue to grow at an accelerated pace as the technology becomes more robust and affordable. Despite substantial biological constraints associated with expansion to every new organism, the growing spectrum of techniques (illustrated in Part I of this book) has already allowed researchers to overcome the encountered problems for many diverse microbes. Moreover, the respective methods, once established in a given species, may be seamlessly expanded toward acquisition of massive data in a variety of experimental conditions. The rapid accumulation of genome-scale essentiality data, even if not matching the volume of sequencing or expression data, would soon create similar bioinformatics challenges. Indeed, such challenges are already apparent despite a relatively modest volume of currently available data.

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Notes

  1. 1.

    1

    Although only a minor fraction of the obtained data has been publicly disclosed, we foresee that most of it will soon become available for the research community, as previously happened with sequenced genomes.

  2. 2.

    For details, see SEED subsystem “FMN and FAD biosynthesis” at http://theseed.uchicago.edu/FIG/subsys.cgi?user=master:&ssa_name=FMN_and_FAD_biosynthesis...request=show_ssa.

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© 2008 Humana Press Inc., a part of Springer Science+Business Media, LLC

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Osterman, A.L., Gerdes, S.Y. (2008). Comparative Approach to Analysis of Gene Essentiality. In: Osterman, A.L., Gerdes, S.Y. (eds) Microbial Gene Essentiality: Protocols and Bioinformatics. Methods in Molecular Biology™, vol 416. Humana Press. https://doi.org/10.1007/978-1-59745-321-9_31

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  • DOI: https://doi.org/10.1007/978-1-59745-321-9_31

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-378-7

  • Online ISBN: 978-1-59745-321-9

  • eBook Packages: Springer Protocols

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