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Defense and Counterdefense in the RNAi-Based Antiviral Immune System in Insects

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Antiviral RNAi

Part of the book series: Methods in Molecular Biology ((MIMB,volume 721))

Abstract

RNA interference (RNAi) is an important pathway to combat virus infections in insects and plants. Hallmarks of antiviral RNAi in these organisms are: (1) an increase in virus replication after inactivation of major actors in the RNAi pathway, (2) production of virus-derived small interfering RNAs (v-siRNAs), and (3) suppression of RNAi by dedicated viral proteins. In this chapter, we will review the mechanism of RNAi in insects, its function as an antiviral immune system, viral small RNA profiles, and viral counterdefense strategies. We will also consider alternative, inducible antiviral immune responses.

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References

  1. Voinnet, O. (2005) Induction and ­suppression of RNA silencing: insights from viral infections, Nat Rev Genet 6, 206–20.

    Article  PubMed  CAS  Google Scholar 

  2. Van Rij, R. P. and Berezikov, E. (2009) Small RNAs and the control of transposons and viruses in Drosophila, Trends Microbiol 17, 139–78.

    Article  Google Scholar 

  3. Weber, F., Wagner, V., Rasmussen, S. B., Hartmann, R., and Paludan, S. R. (2006) Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses, J Virol 80, 5059–64.

    Article  PubMed  CAS  Google Scholar 

  4. Kawamata, T. and Tomari, Y. (2010) Making RISC, Trends Biochem Sci. 35, 368–76.

    CAS  Google Scholar 

  5. Carthew, R. W. and Sontheimer, E. J. (2009) Origins and mechanisms of miRNAs and ­siRNAs, Cell 136, 642–55.

    Article  PubMed  CAS  Google Scholar 

  6. Bernstein, E., Caudy, A. A., Hammond, S. M., and Hannon, G. J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference, Nature 409, 363–6.

    Article  PubMed  CAS  Google Scholar 

  7. Macrae, I. J., Zhou, K., and Doudna, J. A. (2007) Structural determinants of RNA recognition and cleavage by Dicer, Nat Struct Mol Biol 14, 934–40.

    Article  PubMed  CAS  Google Scholar 

  8. Elbashir, S. M., Martinez, J., Patkaniowska, A., Lendeckel, W., and Tuschl, T. (2001) Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate, EMBO J 20, 6877–88.

    Article  PubMed  CAS  Google Scholar 

  9. Elbashir, S. M., Lendeckel, W., and Tuschl, T. (2001) RNA interference is mediated by 21- and 22-nucleotide RNAs, Genes Dev 15, 188–200.

    Article  PubMed  CAS  Google Scholar 

  10. Zhang, H., Kolb, F. A., Jaskiewicz, L., Westhof, E., and Filipowicz, W. (2004) Single processing center models for human Dicer and bacterial RNase III, Cell 118, 57–68.

    Article  PubMed  CAS  Google Scholar 

  11. Macrae, I. J., Zhou, K., Li, F., Repic, A., Brooks, A. N., Cande, W. Z., Adams, P. D., and Doudna, J. A. (2006) Structural basis for double-stranded RNA processing by Dicer, Science 311, 195–8.

    Article  PubMed  CAS  Google Scholar 

  12. Liu, Q., Rand, T. A., Kalidas, S., Du, F., Kim, H. E., Smith, D. P., and Wang, X. (2003) R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway, Science 301, 1921–5.

    Article  PubMed  CAS  Google Scholar 

  13. Zhang, H., Kolb, F. A., Brondani, V., Billy, E., and Filipowicz, W. (2002) Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP, EMBO J 21, 5875–85.

    Article  PubMed  CAS  Google Scholar 

  14. Marques, J. T., Kim, K., Wu, P. H., Alleyne, T. M., Jafari, N., and Carthew, R. W. (2010) Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila, Nat Struct Mol Biol 17, 24–30

    Article  PubMed  CAS  Google Scholar 

  15. Sabin, L. R., Zhou, R., Gruber, J. J., Lukinova, N., Bambina, S., Berman, A., Lau, C. K., Thompson, C. B., and Cherry, S. (2009) Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in Drosophila, Cell 138, 340–51.

    Article  PubMed  CAS  Google Scholar 

  16. Tomari, Y., Matranga, C., Haley, B., Martinez, N., and Zamore, P. D. (2004) A protein sensor for siRNA asymmetry, Science 306, 1377–80.

    Article  PubMed  CAS  Google Scholar 

  17. Lingel, A., Simon, B., Izaurralde, E., and Sattler, M. (2003) Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain, Nature 426, 465–9.

    Article  PubMed  CAS  Google Scholar 

  18. Lingel, A., Simon, B., Izaurralde, E., and Sattler, M. (2004) Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain, Nat Struct Mol Biol 11, 576–7.

    Article  PubMed  CAS  Google Scholar 

  19. Ma, J. B., Ye, K., and Patel, D. J. (2004) Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain, Nature 429, 318–322.

    Article  PubMed  CAS  Google Scholar 

  20. Boland, A., Tritschler, F., Heimstadt, S., Izaurralde, E., and Weichenrieder, O. (2010) Crystal structure and ligand binding of the MID domain of a eukaryotic Argonaute protein, EMBO Rep 11, 522–7.

    Article  PubMed  CAS  Google Scholar 

  21. Wang, Y., Sheng, G., Juranek, S., Tuschl, T., and Patel, D. J. (2008) Structure of the guide-strand-containing argonaute silencing complex, Nature 456, 209–13.

    Article  PubMed  CAS  Google Scholar 

  22. Matranga, C., Tomari, Y., Shin, C., Bartel, D. P., and Zamore, P. D. (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes, Cell 123, 607–20.

    Article  PubMed  CAS  Google Scholar 

  23. Rand, T. A., Petersen, S., Du, F., and Wang, X. (2005) Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation, Cell 123, 621–9.

    Article  PubMed  CAS  Google Scholar 

  24. Miyoshi, K., Tsukumo, H., Nagami, T., Siomi, H., and Siomi, M. C. (2005) Slicer function of Drosophila Argonautes and its involvement in RISC formation, Genes Dev 19, 2837–48.

    Article  PubMed  CAS  Google Scholar 

  25. Liu, Y., Ye, X., Jiang, F., Liang, C., Chen, D., Peng, J., Kinch, L. N., Grishin, N. V., and Liu, Q. (2009) C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation, Science 325, 750–3.

    Article  PubMed  CAS  Google Scholar 

  26. Horwich, M. D., Li, C., Matranga, C., Vagin, V., Farley, G., Wang, P., and Zamore, P. D. (2007) The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC, Curr Biol 17, 1265–72.

    Article  PubMed  CAS  Google Scholar 

  27. Okamura, K., Ishizuka, A., Siomi, H., and Siomi, M. C. (2004) Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways, Genes Dev 18, 1655–66.

    Article  PubMed  CAS  Google Scholar 

  28. Rand, T. A., Ginalski, K., Grishin, N. V., and Wang, X. (2004) Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity, Proc Natl Acad Sci USA 101, 14385–9.

    Article  PubMed  CAS  Google Scholar 

  29. Iwasaki, S., Kawamata, T., and Tomari, Y. (2009) Drosophila argonaute1 and argonaute2 employ distinct mechanisms for translational repression, Mol Cell 34, 58–67.

    CAS  Google Scholar 

  30. Fabian, M. R., Sonenberg, N., and Filipowicz, W. (2010) Regulation of mRNA translation and stability by microRNAs, Annu Rev Biochem 79, 351–79.

    Article  PubMed  CAS  Google Scholar 

  31. Ghildiyal, M., Xu, J., Seitz, H., Weng, Z., and Zamore, P. D. (2010) Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway, RNA 16, 43–56.

    Article  PubMed  CAS  Google Scholar 

  32. Okamura, K., Liu, N., and Lai, E. C. (2009) Distinct mechanisms for microRNA strand selection by Drosophila Argonautes, Mol Cell 36, 431–44.

    Article  PubMed  CAS  Google Scholar 

  33. Czech, B., Zhou, R., Erlich, Y., Brennecke, J., Binari, R., Villalta, C., Gordon, A., Perrimon, N., and Hannon, G. J. (2009) Hierarchical rules for Argonaute loading in Drosophila, Mol Cell 36, 445–56.

    Article  PubMed  CAS  Google Scholar 

  34. Thomson, T. and Lin, H. (2009) The biogenesis and function of PIWI proteins and ­piRNAs: progress and prospect, Annu Rev Cell Dev Biol 25, 355–76.

    Article  PubMed  CAS  Google Scholar 

  35. Van Rij, R. P., Saleh, M. C., Berry, B., Foo, C., Houk, A., Antoniewski, C., and Andino, R. (2006) The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster, Genes Dev 20, 2985–95.

    Article  PubMed  Google Scholar 

  36. Wang, X. H., Aliyari, R., Li, W. X., Li, H. W., Kim, K., Carthew, R., Atkinson, P., and Ding, S. W. (2006) RNA interference directs innate immunity against viruses in adult Drosophila, Science 312, 452–4.

    Article  PubMed  CAS  Google Scholar 

  37. Galiana-Arnoux, D., Dostert, C., Schneemann, A., Hoffmann, J. A., and Imler, J. L. (2006) Essential function in vivo for Dicer-2 in host defense against RNA viruses in Drosophila, Nat Immunol 7, 590–7.

    Article  PubMed  CAS  Google Scholar 

  38. Zambon, R. A., Vakharia, V. N., and Wu, L. P. (2006) RNAi is an antiviral immune response against a dsRNA virus in Drosophila melanogaster, Cell Microbiol 8, 880–9.

    Article  PubMed  CAS  Google Scholar 

  39. Campbell, C. L., Keene, K. M., Brackney, D. E., Olson, K. E., Blair, C. D., Wilusz, J., and Foy, B. D. (2008) Aedes aegypti uses RNA interference in defense against Sindbis virus infection, BMC Microbiol 8, 47.

    Article  PubMed  Google Scholar 

  40. Sanchez-Vargas, I., Scott, J. C., Poole-Smith, B. K., Franz, A. W., Barbosa-Solomieu, V., Wilusz, J., Olson, K. E., and Blair, C. D. (2009) Dengue virus type 2 infections of Aedes aegypti are modulated by the mosquito’s RNA interference pathway, PLoS Pathog 5, e1000299.

    Article  PubMed  Google Scholar 

  41. Keene, K. M., Foy, B. D., Sanchez-Vargas, I., Beaty, B. J., Blair, C. D., and Olson, K. E. (2004) From the cover: RNA interference acts as a natural antiviral response to O’nyong-nyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae, Proc Natl Acad Sci U S A 101, 17240–5.

    Article  PubMed  CAS  Google Scholar 

  42. Sanchez-Vargas, I., Travanty, E. A., Keene, K. M., Franz, A. W., Beaty, B. J., Blair, C. D., and Olson, K. E. (2004) RNA interference, arthropod-borne viruses, and mosquitoes, Virus Res 102, 65–74.

    Article  PubMed  CAS  Google Scholar 

  43. Brackney, D. E., Beane, J. E., and Ebel, G. D. (2009) RNAi targeting of West Nile virus in mosquito midguts promotes virus diversification, PLoS Pathog 5, e1000502.

    Article  PubMed  Google Scholar 

  44. Aliyari, R., Wu, Q., Li, H. W., Wang, X. H., Li, F., Green, L. D., Han, C. S., Li, W. X., and Ding, S. W. (2008) Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila, Cell Host Microbe 4, 387–97.

    Article  PubMed  CAS  Google Scholar 

  45. Flynt, A., Liu, N., Martin, R., and Lai, E. C. (2009) Dicing of viral replication intermediates during silencing of latent Drosophila viruses, Proc Natl Acad Sci U S A 106, 5270–5.

    Article  PubMed  CAS  Google Scholar 

  46. Myles, K. M., Wiley, M. R., Morazzani, E. M., and Adelman, Z. N. (2008) Alphavirus-derived small RNAs modulate pathogenesis in disease vector mosquitoes, Proc Natl Acad Sci U S A 105, 19938–43.

    Article  PubMed  CAS  Google Scholar 

  47. Wu, Q., Luo, Y., Lu, R., Lau, N., Lai, E. C., Li, W. X., and Ding, S. W. (2010) Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs, Proc Natl Acad Sci U S A 107, 1606–11.

    Article  PubMed  CAS  Google Scholar 

  48. Li, H. W., Li, W. X., and Ding, S. W. (2002) Induction and suppression of RNA silencing by an animal virus, Science 296, 1319–21.

    Article  PubMed  CAS  Google Scholar 

  49. Nayak, A., Berry, B., Tassetto, M., Kunitomi, M., Acevedo, A., Deng, C., Krutchinsky, A., Gross, J., Antoniewski, C., and Andino, R. (2010) Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila, Nat Struct Mol Biol 17, 547–54.

    Article  PubMed  CAS  Google Scholar 

  50. Voinnet, O. (2005) Non-cell autonomous RNA silencing, FEBS Lett 579, 5858–71.

    Article  PubMed  CAS  Google Scholar 

  51. Dunoyer, P., Schott, G., Himber, C., Meyer, D., Takeda, A., Carrington, J. C., and Voinnet, O. (2010) Small RNA duplexes function as mobile silencing signals between plant cells, Science 328, 912–16.

    Article  PubMed  CAS  Google Scholar 

  52. Saleh, M. C., Tassetto, M., Van Rij, R. P., Goic, B., Gausson, V., Berry, B., Jacquier, C., Antoniewski, C., and Andino, R. (2009) Antiviral immunity in Drosophila requires systemic RNA interference spread, Nature 458, 346–50.

    Article  PubMed  CAS  Google Scholar 

  53. Lipardi, C. and Paterson, B. M. (2009) Identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression, Proc Natl Acad Sci U S A 106, 15645–50.

    Article  PubMed  CAS  Google Scholar 

  54. Czech, B., Malone, C. D., Zhou, R., Stark, A., Schlingeheyde, C., Dus, M., Perrimon, N., Kellis, M., Wohlschlegel, J. A., Sachidanandam, R., Hannon, G. J., and Brennecke, J. (2008) An endogenous small interfering RNA pathway in Drosophila, Nature 453, 798–802.

    Article  PubMed  CAS  Google Scholar 

  55. Kopek, B. G., Perkins, G., Miller, D. J., Ellisman, M. H., and Ahlquist, P. (2007) Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle, PLoS Biol 5, e220.

    Article  PubMed  Google Scholar 

  56. Szittya, G., Moxon, S., Pantaleo, V., Toth, G., Rusholme Pilcher, R. L., Moulton, V., Burgyan, J., and Dalmay, T. (2010) Structural and functional analysis of viral siRNAs, PLoS. Pathog. 6, e1000838.

    Article  PubMed  Google Scholar 

  57. Ahlquist, P. (2006) Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA viruses, Nat Rev Microbiol 4, 371–82.

    Article  PubMed  CAS  Google Scholar 

  58. Hemmes, H., Lakatos, L., Goldbach, R., Burgyan, J., and Prins, M. (2007) The NS3 protein of Rice hoja blanca tenuivirus suppresses RNA silencing in plant and insect hosts by efficiently binding both siRNAs and miRNAs, RNA 13, 1079–89.

    Article  PubMed  CAS  Google Scholar 

  59. Merai, Z., Kerenyi, Z., Kertesz, S., Magna, M., Lakatos, L., and Silhavy, D. (2006) Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing, J Virol 80, 5747–56.

    Article  PubMed  CAS  Google Scholar 

  60. Silhavy, D., Molnar, A., Lucioli, A., Szittya, G., Hornyik, C., Tavazza, M., and Burgyan, J. (2002) A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs, EMBO J 21, 3070–80.

    Article  PubMed  CAS  Google Scholar 

  61. Lakatos, L., Szittya, G., Silhavy, D., and Burgyan, J. (2004) Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses, EMBO J 23, 876–84.

    Article  PubMed  CAS  Google Scholar 

  62. Havelda, Z., Hornyik, C., Crescenzi, A., and Burgyan, J. (2003) In situ characterization of Cymbidium Ringspot Tombusvirus infection-induced posttranscriptional gene silencing in Nicotiana benthamiana, J Virol 77, 6082–6.

    Article  CAS  Google Scholar 

  63. Baumberger, N., Tsai, C. H., Lie, M., Havecker, E., and Baulcombe, D. C. (2007) The polerovirus silencing suppressor p0 targets argonaute proteins for degradation, Curr Biol 17, 1609–14.

    Article  PubMed  CAS  Google Scholar 

  64. Bortolamiol, D., Pazhouhandeh, M., Marrocco, K., Genschik, P., and Ziegler-Graff, V. (2007) The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing, Curr Biol 17, 1615–21.

    CAS  Google Scholar 

  65. Csorba, T., Lozsa, R., Hutvagner, G., and Burgyan, J. (2010) Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1, Plant J 62, 463–72.

    Article  PubMed  CAS  Google Scholar 

  66. Ho, M. S., Tsai, P. I., and Chien, C. T. (2006) F-box proteins: the key to protein degradation, J Biomed Sci 13, 181–91.

    Article  PubMed  CAS  Google Scholar 

  67. Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, D. J., and Chua, N. H. (2006) Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense, Genes Dev 20, 3255–68.

    Article  PubMed  CAS  Google Scholar 

  68. Gonzalez, I., Martinez, L., Rakitina, D. V., Lewsey, M. G., Atencio, F. A., Llave, C., Kalinina, N. O., Carr, J. P., Palukaitis, P., and Canto, T. (2010) Cucumber mosaic virus 2b protein subcellular targets and interactions: their significance to RNA silencing suppressor activity, Mol Plant Microbe Interact 23, 294–303.

    Article  PubMed  CAS  Google Scholar 

  69. Goto, K., Kobori, T., Kosaka, Y., Natsuaki, T., and Masuta, C. (2007) Characterization of silencing suppressor 2b of cucumber mosaic virus based on examination of its small RNA-binding abilities, Plant Cell Physiol 48, 1050–60.

    Article  PubMed  CAS  Google Scholar 

  70. El-Shami, M., Pontier, D., Lahmy, S., Braun, L., Picart, C., Vega, D., Hakimi, M. A., Jacobsen, S. E., Cooke, R., and Lagrange, T. (2007) Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components, Genes Dev 21, 2539–44.

    Article  PubMed  CAS  Google Scholar 

  71. Azevedo, J., Garcia, D., Pontier, D., Ohnesorge, S., Yu, A., Garcia, S., Braun, L., Bergdoll, M., Hakimi, M. A., Lagrange, T., and Voinnet, O. (2010) Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein, Genes Dev 24, 904–15.

    Article  PubMed  CAS  Google Scholar 

  72. Chao, J. A., Lee, J. H., Chapados, B. R., Debler, E. W., Schneemann, A., and Williamson, J. R. (2005) Dual modes of RNA-silencing suppression by Flock House virus protein B2, Nat Struct Mol Biol 12, 952–7.

    PubMed  CAS  Google Scholar 

  73. Bonning, B. C. and Miller, W. A. (2010) Dicistroviruses, Annu Rev Entomol 55, 129–150.

    Article  PubMed  CAS  Google Scholar 

  74. Manousis, T. and Moore, N. F. (1987) Cricket paralysis virus, a potential control agent for the Olive Fruit Fly, Dacus oleae Gmel, Appl Environ Microbiol 53, 142–8.

    PubMed  CAS  Google Scholar 

  75. Attarzadeh-Yazdi, G., Fragkoudis, R., Chi, Y., Siu, R. W., Ulper, L., Barry, G., Rodriguez-Andres, J., Nash, A. A., Bouloy, M., Merits, A., Fazakerley, J. K., and Kohl, A. (2009) Cell-to-cell spread of the RNA interference response suppresses Semliki Forest virus (SFV) infection of mosquito cell cultures and cannot be antagonized by SFV, J Virol 83, 5735–48.

    Article  PubMed  CAS  Google Scholar 

  76. Cirimotich, C. M., Scott, J. C., Phillips, A. T., Geiss, B. J., and Olson, K. E. (2009) Suppression of RNA interference increases alphavirus replication and virus-associated mortality in Aedes aegypti mosquitoes, BMC Microbiol 9, 49.

    Article  PubMed  Google Scholar 

  77. Blakqori, G., Delhaye, S., Habjan, M., Blair, C. D., Sanchez-Vargas, I., Olson, K. E., Attarzadeh-Yazdi, G., Fragkoudis, R., Kohl, A., Kalinke, U., Weiss, S., Michiels, T., Staeheli, P., and Weber, F. (2007) La Crosse bunyavirus nonstructural protein NSs serves to suppress the type I interferon system of mammalian hosts, J Virol 81, 4991–9.

    Article  PubMed  CAS  Google Scholar 

  78. Li, H. W. and Ding, S. W. (2005) Antiviral silencing in animals, FEBS Lett 579, 5965–73.

    Article  PubMed  CAS  Google Scholar 

  79. Ghildiyal, M. and Zamore, P. D. (2009) Small silencing RNAs: an expanding universe, Nat Rev Genet 10, 94–108.

    Article  PubMed  CAS  Google Scholar 

  80. Lau, N. C., Robine, N., Martin, R., Chung, W. J., Niki, Y., Berezikov, E., and Lai, E. C. (2009) Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line, Genome Res 19, 1776–85.

    Article  PubMed  CAS  Google Scholar 

  81. van Mierlo, J. T., van Cleef, K. W. R., and Van Rij, R. P. (2010) Small silencing RNAs: piecing together a viral genome, Cell Host Microbe 7, 87–9.

    Article  Google Scholar 

  82. Hussain, M., Taft, R. J., and Asgari, S. (2008) An insect virus-encoded microRNA regulates viral replication, J Virol 82, 9164–70.

    Article  PubMed  CAS  Google Scholar 

  83. Hussain, M. and Asgari, S. (2010) Functional analysis of a cellular microRNA in insect host-ascovirus interaction, J Virol 84, 612–20.

    Article  CAS  Google Scholar 

  84. Zambon, R. A., Nandakumar, M., Vakharia, V. N., and Wu, L. P. (2005) The Toll pathway is important for an antiviral response in Drosophila, Proc Natl Acad Sci U S A 102, 7257–62.

    Article  PubMed  CAS  Google Scholar 

  85. Xi, Z., Ramirez, J. L., and Dimopoulos, G. (2008) The Aedes aegypti toll pathway controls dengue virus infection, PLoS Pathog 4, e1000098.

    Article  PubMed  Google Scholar 

  86. Costa, A., Jan, E., Sarnow, P., and Schneider, D. (2009) The Imd pathway is involved in antiviral immune responses in Drosophila, PLoS One 4, e7436.

    Article  PubMed  Google Scholar 

  87. Dostert, C., Jouanguy, E., Irving, P., Troxler, L., Galiana-Arnoux, D., Hetru, C., Hoffmann, J. A., and Imler, J. L. (2005) The Jak-STAT signaling pathway is required but not sufficient for the antiviral response of Drosophila, Nat Immunol 6, 946–53.

    Article  PubMed  CAS  Google Scholar 

  88. Deddouche, S., Matt, N., Budd, A., Mueller, S., Kemp, C., Galiana-Arnoux, D., Dostert, C., Antoniewski, C., Hoffmann, J. A., and Imler, J. L. (2008) The DExD/H-box helicase Dicer-2 mediates the induction of antiviral activity in Drosophila, Nat Immunol 9, 1425–32.

    Article  PubMed  CAS  Google Scholar 

  89. Singh, G., Popli, S., Hari, Y., Malhotra, P., Mukherjee, S., and Bhatnagar, R. K. (2009) Suppression of RNA silencing by Flock house virus B2 protein is mediated through its interaction with the PAZ domain of Dicer, FASEB J 23, 1845–57.

    Article  PubMed  CAS  Google Scholar 

  90. Ratcliff, F., Harrison, B. D., and Baulcombe, D. C. (1997) A similarity between viral defense and gene silencing in plants, Science 276, 1558–60.

    Article  PubMed  CAS  Google Scholar 

  91. Hamilton, A. J. and Baulcombe, D. C. (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants, Science 286, 950–2.

    Article  PubMed  CAS  Google Scholar 

  92. Merai, Z., Kerenyi, Z., Molnar, A., Barta, E., Valoczi, A., Bisztray, G., Havelda, Z., Burgyan, J., and Silhavy, D. (2005) Aureusvirus P14 is an efficient RNA silencing suppressor that binds double-stranded RNAs without size specificity, J Virol 79, 7217–26.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This work was financially supported by a fellowship from the Nijmegen Center for Molecular Life Sciences, by a VIDI fellowship from the Netherlands Organization for Scientific Research (project number 864.08.003), and by Horizon Breakthrough fellowships from the Netherlands Genomics Initiative (project numbers 93519018 and 93518020).

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Correspondence to Ronald P. van Rij .

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van Mierlo, J.T., van Cleef, K.W.R., van Rij, R.P. (2011). Defense and Counterdefense in the RNAi-Based Antiviral Immune System in Insects. In: van Rij, R. (eds) Antiviral RNAi. Methods in Molecular Biology, vol 721. Humana Press. https://doi.org/10.1007/978-1-61779-037-9_1

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